View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4853-Insertion-6 (Length: 267)
Name: NF4853-Insertion-6
Description: NF4853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4853-Insertion-6 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 24430205 - 24429945
Alignment:
| Q |
7 |
atcgtcaactcgtaggcagcttgatttaccttactgttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24430205 |
atcgtcaactcgtaggcagcttgatttaccttactgttactcgaccagatatctcttatgctgttcatttagttagtcaattcatgaatgccccacagag |
24430106 |
T |
|
| Q |
107 |
cacccattatgttgctgttcttcgaatcattcggtatatcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcc |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24430105 |
cacccattatgctgctgttcttcgaatcattcggtatatcaagggtactatgtttcatggtcttcaatattcagtcacatctcccttgattcttagagcc |
24430006 |
T |
|
| Q |
207 |
tactctgatgcagattgggcaggtgatcccagtgaccgtcgctctactactggtttttgta |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24430005 |
tactctgatgcagattgggcaggtgatccaagtgaccgtcgctctactactggtttttgta |
24429945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 29992400 - 29992655
Alignment:
| Q |
12 |
caactcgtaggcagcttgatttaccttactgttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggagcaccc |
111 |
Q |
| |
|
||||||||||| || |||| ||||| |||||||| || |||||||| || |||||||||||| | ||||| |||||||||| | | ||||| | ||| | |
|
|
| T |
29992400 |
caactcgtaggtagtctgatatacctcactgttacacggccagatatttcatatgttgttcatcttgttagccaattcatgacttctccacgtaccacac |
29992499 |
T |
|
| Q |
112 |
attatgttgctgttcttcgaatcattcggtatatcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcctactc |
211 |
Q |
| |
|
|||||| ||||| ||||| || ||||| |||||||||||||| | ||| |||||||||| || ||| |||||||| |||||||||||||||||||| |
|
|
| T |
29992500 |
attatgcagctgtccttcggattattcgatatatcaagggtaccttattttatggtcttcattactcaaatacatctccattgattcttagagcctactc |
29992599 |
T |
|
| Q |
212 |
tgatgcagattgggcaggtgatcccagtgaccgtcgctctactactggtttttgta |
267 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| || || || || ||||||||||||| |
|
|
| T |
29992600 |
tgatgccgattgggctggtgatcctagtgatcgccgttccaccactggtttttgta |
29992655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 16504446 - 16504706
Alignment:
| Q |
7 |
atcgtcaactcgtaggcagcttgatttaccttactgttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggag |
106 |
Q |
| |
|
|||| ||||||||||| || |||| |||| ||||||||||| || ||||| || |||||| ||||| | ||||| ||||||||| | | ||||| | |
|
|
| T |
16504446 |
atcggcaactcgtaggtagtctgatataccgcactgttactcggccggatatttcatatgttattcatcttgttagccaattcatggcttctccacgtac |
16504545 |
T |
|
| Q |
107 |
cacccattatgttgctgttcttcgaatcattcggtatatcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcc |
206 |
Q |
| |
|
||| ||||||| || ||| ||||| || || |||||||||||||||| | ||| |||||||||| || |||| ||||| | ||||||||||||| |
|
|
| T |
16504546 |
cacacattatgatgttgtccttcggattatatggtatatcaagggtaccttattttatggtcttcattactcagctacatcctcgctgattcttagagca |
16504645 |
T |
|
| Q |
207 |
tactctgatgcagattgggcaggtgatcccagtgaccgtcgctctactactggtttttgta |
267 |
Q |
| |
|
|| ||||||| |||||||| |||||||| ||| ||||||| || || ||| ||||||||| |
|
|
| T |
16504646 |
tattctgatgtcgattgggccggtgatcctagttaccgtcgttccaccactagtttttgta |
16504706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 53015738 - 53015524
Alignment:
| Q |
33 |
taccttactgttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggagcacccattatgttgctgttcttcgaa |
132 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||||||| | ||||| ||||||||| | | ||||| | ||| ||||| | |||||| ||||| | |
|
|
| T |
53015738 |
tacctcactgttactcggccagatatttcatatgttgttcatcttgttagccaattcatggcttctccacgtaccacacattacgctgctgtccttcgga |
53015639 |
T |
|
| Q |
133 |
tcattcggtatatcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcctactctgatgcagattgggcaggtga |
232 |
Q |
| |
|
| ||||||||||| |||||||| | ||| |||||||||| || ||| |||||||| ||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
53015638 |
tttttcggtatatctagggtactttattttatggtcttcattactcatctacatctccattgattcttagagcctactctgatgtcgattgggccggtga |
53015539 |
T |
|
| Q |
233 |
tcccagtgaccgtcg |
247 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
53015538 |
tcctagtgatcgtcg |
53015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 27684108 - 27684308
Alignment:
| Q |
43 |
ttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggagcacccattatgttgctgttcttcgaatcattcggta |
142 |
Q |
| |
|
||||||||||| |||| || |||||||||||| | ||||| |||||||||| | | || | | ||| |||||||||| ||| || | ||| |||||||| |
|
|
| T |
27684108 |
ttactcgaccatatatttcatatgttgttcatcttgttagccaattcatgacttcttcatgtaccacacattatgttggtgtcctccaaattattcggta |
27684207 |
T |
|
| Q |
143 |
tatcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcctactctgatgcagattgggcaggtgatcccagtgac |
242 |
Q |
| |
|
||||||||||| | | ||| ||||| |||| || ||||| |||| | ||||||||||| ||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
27684208 |
tatcaagggtagtttattttatggtattcattactcagttacattctcattgattcttagttcctactctgatgccgattgggccggtgatcctagtgac |
27684307 |
T |
|
| Q |
243 |
c |
243 |
Q |
| |
|
| |
|
|
| T |
27684308 |
c |
27684308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 17409687 - 17409474
Alignment:
| Q |
28 |
tgatttaccttactgttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggagcacccattatgttgctgttct |
127 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| || |||||||||||| | ||||| |||||||||| | | ||| | | ||| ||||||| | ||| || |
|
|
| T |
17409687 |
tgatatacctcactgttacatgaccagatatttcatatgttgttcatcttgttagccaattcatgacttctccatgtaccacacattatgcagatgtcct |
17409588 |
T |
|
| Q |
128 |
tcgaatcattcggtatatcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcctactctgatgcagattgggca |
227 |
Q |
| |
|
|| || ||| | |||||||||||||| | ||| |||||||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
17409587 |
tcagattatttgatatatcaagggtaccttattttatggtcttcataactcaaatacatctccattgattcttagagcctactctgatgccgattgggcc |
17409488 |
T |
|
| Q |
228 |
ggtgatcccagtga |
241 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17409487 |
ggtgatcctagtga |
17409474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 267
Target Start/End: Complemental strand, 40124203 - 40123980
Alignment:
| Q |
44 |
tactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggagcacccattatgttgctgttcttcgaatcattcggtat |
143 |
Q |
| |
|
||||||||| |||| || ||| |||||||| | ||||| |||||||| | | ||||| ||||| |||||||||| ||| ||| | || ||||||||| |
|
|
| T |
40124203 |
tactcgaccgaatatttcatattttgttcatcttgttagctaattcatggcttctccacgtagcacacattatgttgttgtcctttggattattcggtat |
40124104 |
T |
|
| Q |
144 |
atcaagggtactatgtttcatggtcttcactattcagtcacatctcccttgattcttagagcctactctgatgcagattgggcaggtgatcccagtgacc |
243 |
Q |
| |
|
||||||| || | ||| ||| |||||| || ||| ||||| || || ||||||||| ||||||||||||| ||||||| |||||||| ||| | |
|
|
| T |
40124103 |
gtcaagggccctttattttatgatcttcattactcaactacatccccattaattcttagaccctactctgatgccaattgggctggtgatcctagtaatt |
40124004 |
T |
|
| Q |
244 |
gtcgctctactactggtttttgta |
267 |
Q |
| |
|
|||| || || ||||||||||||| |
|
|
| T |
40124003 |
gtcgttccaccactggtttttgta |
40123980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 12559308 - 12559445
Alignment:
| Q |
15 |
ctcgtaggcagcttgatttaccttactgttactcgaccagatatctcttatgttgttcatttagttagtcaattcatgaatgccccacggagcacccatt |
114 |
Q |
| |
|
|||||||| || ||||| ||||| | ||||||||| ||| |||| || |||||||||||| | |||||||||||||| || | || || | ||| |||| |
|
|
| T |
12559308 |
ctcgtaggtagtttgatatacctcattgttactcggccatatatttcatatgttgttcatcttattagtcaattcatggattctcctcgtaccacacatt |
12559407 |
T |
|
| Q |
115 |
atgttgctgttcttcgaatcattcggtatatcaagggt |
152 |
Q |
| |
|
|||||| ||| |||| || ||||||||||| |||||| |
|
|
| T |
12559408 |
atgttgttgtccttctgattattcggtatattaagggt |
12559445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University