View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4853_low_2 (Length: 502)
Name: NF4853_low_2
Description: NF4853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4853_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 3764870 - 3764604
Alignment:
| Q |
19 |
caatagcaagtctcgattaaagaaattgaatatgaccaattttacaattcaaaacggaagcatcatctgccaaccatgaagcaagcacattaacaccaac |
118 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3764870 |
caatagaatgtctcgattaaagaaattgaatatgaccaattttacaattcaaaacggaagcatcatctgccaaccatgaagcatgcacattaacaccaac |
3764771 |
T |
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| Q |
119 |
caccatactcttattaaaattaacctttagatctgaaatcgcctccaaaagaataagaacaagtttcagggattgaacattttactcaactcttgacact |
218 |
Q |
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| T |
3764770 |
caacatactcttattaaaattaacctttagacctgaaatcgcctccaaaagaataagaacaactttcagggattgaaca-tttactcaactcttgacact |
3764672 |
T |
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| Q |
219 |
caacaataaagtgccatcaacaaattataagtgagagccagagatgttattagaacgaactactgagt |
286 |
Q |
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| T |
3764671 |
caacaataaagtgccatcaacaaattataagtgagagctagagatgttgttagaacgatctactgagt |
3764604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 308 - 427
Target Start/End: Complemental strand, 3763802 - 3763683
Alignment:
| Q |
308 |
ctctctacttctttataatgatgcatgtgagtcactaaaatgacgcaaccatgatcatgagccaacaaccacgccacacacccattctgattcagccatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3763802 |
ctctctacttctttataatgatgcatgtgagtcactaaaatgacgcaaccatgatcatgagccaacaaccacgccatacacccattctgattcagccatt |
3763703 |
T |
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| Q |
408 |
gaatggaaccaaatgatata |
427 |
Q |
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| T |
3763702 |
gaatggaaccaaatgatata |
3763683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 449
Target Start/End: Complemental strand, 3775699 - 3775566
Alignment:
| Q |
316 |
ttctttataatgatgcatgtgagtcactaaaatgacgcaaccatgatcatgagccaacaaccacgccacacacccattctgattcagccat-tga----a |
410 |
Q |
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||||||||| ||||||||| |||||| | ||||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||| ||| | |
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| T |
3775699 |
ttctttata-tgatgcatgcgagtcaatgaaatgacgcaa------tcatgagccaacaactacgccacacacctattcagattcagccatgtgatgcca |
3775607 |
T |
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| Q |
411 |
tggaaccaaatgata--tattcctatatatgctttttctca |
449 |
Q |
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||||||||||||||| | ||||||| |||| ||||||||| |
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| T |
3775606 |
tggaaccaaatgatatgttttcctatctatgttttttctca |
3775566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Complemental strand, 3763563 - 3763523
Alignment:
| Q |
447 |
tcaatgaccagttctctttttatatttttgatccagaataa |
487 |
Q |
| |
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||||||| || |||||||||||||||||||||||| ||||| |
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| T |
3763563 |
tcaatgatcacttctctttttatatttttgatccataataa |
3763523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 23847139 - 23846984
Alignment:
| Q |
46 |
gaatatgaccaattttacaattcaaaacggaagcatcatctgccaaccatgaagcaagcacattaacaccaaccaccatactcttattaaaattaacctt |
145 |
Q |
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| T |
23847139 |
gaatatgactcattttacaattcaaaatagatgcagccttagccaaccaagaagctgccacattatcaccaacccacatactcttattaaaattaacctt |
23847040 |
T |
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| Q |
146 |
tagatctgaaatcgcctccaaaagaataagaacaagtttcagggattgaacatttt |
201 |
Q |
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||| | |||| |||| |||||||||||||||| |||||||||| |||||||| |
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| T |
23847039 |
taggcttagaatcacctcaaaaagaataagaacaaatttcagggatcaaacatttt |
23846984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 5367438 - 5367521
Alignment:
| Q |
58 |
ttttacaattcaaaacggaagcatcatctgccaaccatgaagcaagcacattaacaccaaccaccatactcttattaaaattaa |
141 |
Q |
| |
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|||||||||||||||| |||||| ||| ||| |||| ||||||| ||||||||||| ||||| |||||||||||| ||||||| |
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| T |
5367438 |
ttttacaattcaaaactgaagcagcattagccgaccaagaagcaaccacattaacactaaccaacatactcttattgaaattaa |
5367521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 13218850 - 13218896
Alignment:
| Q |
129 |
ttattaaaattaacctttagatctgaaatcgcctccaaaagaataag |
175 |
Q |
| |
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||||||||||| ||||||| | ||||||| ||||||||||||||||| |
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| T |
13218850 |
ttattaaaatttacctttaaacctgaaattgcctccaaaagaataag |
13218896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 4165785 - 4165912
Alignment:
| Q |
116 |
aaccaccatactcttattaaaattaacctttagatctgaaatcgcctccaaaagaataagaacaagtttcagggattgaacattttactcaactcttgac |
215 |
Q |
| |
|
||||| |||| | ||||| |||| ||||| ||| | ||||| |||| |||||||||||||||| ||| ||||| || ||||| | ||||||||||| |
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| T |
4165785 |
aaccaacatatttttattgaaatcgaccttgagaccagaaatggccttgaaaagaataagaacaacttttagggaacaaatattttcc-caactcttgac |
4165883 |
T |
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| Q |
216 |
actcaacaataaagtgccatcaacaaatt |
244 |
Q |
| |
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| ||||||||||||| | |||||||||| |
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| T |
4165884 |
tcccaacaataaagtgtcgtcaacaaatt |
4165912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 13447932 - 13448027
Alignment:
| Q |
105 |
acattaacaccaaccaccatactcttattaaaattaacctttagatctgaaatcgcctccaaaagaataagaacaagtttcagggattgaacattt |
200 |
Q |
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||||||||||| |||| ||| || ||||||||||| |||||||| |||| ||||||| |||| |||||||||| ||||| |||| ||||||| |
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| T |
13447932 |
acattaacaccgaccaacatgcttttattaaaattgacctttaggcctgagatcgcctaaaaaaagataagaacaactttcatggatctaacattt |
13448027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 20754639 - 20754677
Alignment:
| Q |
104 |
cacattaacaccaaccaccatactcttattaaaattaac |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
20754639 |
cacattaacaccaaccaacatactcttattgaaattaac |
20754677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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