View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4853_low_3 (Length: 398)

Name: NF4853_low_3
Description: NF4853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4853_low_3
NF4853_low_3
[»] chr6 (10 HSPs)
chr6 (1-381)||(6461845-6462225)
chr6 (68-381)||(6496514-6496827)
chr6 (153-376)||(6465259-6465482)
chr6 (153-376)||(6526298-6526521)
chr6 (90-352)||(6505343-6505605)
chr6 (89-334)||(6473114-6473359)
chr6 (153-226)||(6457299-6457372)
chr6 (257-376)||(6523423-6523542)
chr6 (153-364)||(6528119-6528330)
chr6 (294-339)||(13035808-13035853)
[»] chr7 (2 HSPs)
chr7 (153-229)||(3754004-3754080)
chr7 (256-360)||(9665350-9665454)
[»] chr4 (1 HSPs)
chr4 (256-360)||(13536374-13536478)
[»] chr1 (3 HSPs)
chr1 (317-376)||(35231462-35231521)
chr1 (312-376)||(35243102-35243166)
chr1 (89-121)||(35244309-35244341)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 6462225 - 6461845
Alignment:
Q  1 tatgttgaattaatcctggataataatggtggccttgaacgtaaatataatctctttgacgttggtaatcggtgtctggtcctgagtccaagttcataaa 100  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  6462225 tatgttgaattaaccctggagcataatggtggccttgaacgtaatcataatctctttgacgtgggtcatcggagtctggtcctgagtccaagttcataaa 6462126  T
Q  101 atctttcataagtgaataggccttcgacttgtatttctcaccccatgcagtgtcaatctttgtaagaactgcaattccataaagaaagtatcccaagtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6462125 atctttcataagtgaataggccttcgacttgtatttctcaccccatgcagtgtcaatctttgtaagaactgcaattccataaagaaagtatcccaagtga 6462026  T
Q  201 tcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatagacccttgttcggtaacaatgccaccccatttatcatcttgtagaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6462025 tcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatagacccttgttcggtaacaatgccaccccatttatcatcttgtagaaatc 6461926  T
Q  301 cattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaacttcttaacctttggaatcacatctaagt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6461925 cattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaacttcttaacctttggaatcacatctaagt 6461845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 68 - 381
Target Start/End: Original strand, 6496514 - 6496827
Alignment:
Q  68 atcggtgtctggtcctgagtccaagttcataaaatctttcataagtgaataggccttcgacttgtatttctcaccccatgcagtgtcaatctttgtaaga 167  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||| ||||||    
T  6496514 atcggagtctggtcccgagttcaagttcataaaatctttcataagtgaataggccgcagacttatatttctcaccccatgcagtgtcaatcttagtaaga 6496613  T
Q  168 actgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatagacccttgttcggtaa 267  Q
    || ||||||||||||||||||||||| ||||||||||  |||||| |||| |||||||||||||| ||||| |||||||| | ||||||||||  |||||    
T  6496614 acagcaattccataaagaaagtatcctaagtgatcagcatgatcattatagattccgaaaccggaatcagcattagaatcaacagacccttgtatggtaa 6496713  T
Q  268 caatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaacttcttaacctttgg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6496714 caatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttcaaaaacttcttaacctttgg 6496813  T
Q  368 aatcacatctaagt 381  Q
    ||||||||||||||    
T  6496814 aatcacatctaagt 6496827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 153 - 376
Target Start/End: Original strand, 6465259 - 6465482
Alignment:
Q  153 tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatag 252  Q
    |||||||||| ||| || ||||||||||| ||||||||||| || |||| | | |||||| |||||| |||||| ||  | |||||   || |||  |||    
T  6465259 tcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaatccaaaatcagcaccagtatcattag 6465358  T
Q  253 acccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaa 352  Q
    ||||||||| ||||||||| || ||||||||  |||| |  ||||||||||| ||||| ||||||||||| | |||||||||||| ||||| || |||||    
T  6465359 acccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttccttcaaaaa 6465458  T
Q  353 cttcttaacctttggaatcacatc 376  Q
    |||| |||  || |||||||||||    
T  6465459 cttcctaattttcggaatcacatc 6465482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 376
Target Start/End: Original strand, 6526298 - 6526521
Alignment:
Q  153 tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatag 252  Q
    |||||||| | ||| |||||||||||||| ||||||||||| || |||| | | |||||| |||||| |||||| ||  | |||||    | ||   |||    
T  6526298 tcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcaccggcatttgtag 6526397  T
Q  253 acccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaa 352  Q
    | || |||| ||| |||||  | |||||||| | ||| |  ||||||||||| ||||| ||||||||||| | |||||||||||||||||| || ||| |    
T  6526398 aaccatgtttggttacaatatctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaata 6526497  T
Q  353 cttcttaacctttggaatcacatc 376  Q
    |||  |||| ||||||||||||||    
T  6526498 ctttctaacttttggaatcacatc 6526521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 352
Target Start/End: Original strand, 6505343 - 6505605
Alignment:
Q  90 aagttcataaaatctttcataagtgaataggccttcgacttgtatttctcaccccatgcagtgtcaatctttgtaagaactgcaattccataaagaaagt 189  Q
    |||||||||||||||| || |||||||||||| |  | ||| ||||||  ||||||||  |  || ||||||  ||| ||||| ||| | |||||||| |    
T  6505343 aagttcataaaatcttccacaagtgaataggcttgagccttatatttcctaccccatgttggatcgatctttacaagcactgctattgcgtaaagaaaat 6505442  T
Q  190 atcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatagacccttgttcggtaacaatgccaccccatttatcatc 289  Q
    |||| ||||||    | |||||| | ||||||||||||||| | ||| |   |  |||  ||||||||||||  |||| ||  || |||||||| | |||    
T  6505443 atcctaagtgaaagtgatgatcattgtaaattccgaaaccgaaatcaccaccaccatcattagacccttgttgagtaataagtcctccccattttttatc 6505542  T
Q  290 ttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaa 352  Q
     | |||||||||||| ||||| ||||||||||| | |||||||||||||||||| || |||||    
T  6505543 atatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaa 6505605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 334
Target Start/End: Complemental strand, 6473359 - 6473114
Alignment:
Q  89 caagttcataaaatctttcataagtgaataggccttcgacttgtatttctcaccccatgcagtgtcaatctttgtaagaactgcaattccataaagaaag 188  Q
    |||| |||||||||||| ||| |||| |||||| |  | ||| ||||||| ||||||  | |  |||||||| | ||| |||||||||||||| ||||||    
T  6473359 caaggtcataaaatcttccatgagtgcataggcttgaggcttatatttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaag 6473260  T
Q  189 tatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatagacccttgttcggtaacaatgccaccccatttatcat 288  Q
    || || || |||| | | |||||| ||||||||||||| ||| | |||||    | |||  |||| ||||||| ||| | ||| || |||||||| | ||    
T  6473259 taacctaaatgataatgatgatcattataaattccgaacccgaaatcagcaccggtatcagtagaaccttgtttggttataatacctccccattttttat 6473160  T
Q  289 cttgtagaaatccattcccatttaaagttccatctaaccaaggctc 334  Q
    | |  ||||||||||| ||||| || |||||||| | |||||||||    
T  6473159 catagagaaatccatttccattaaatgttccatcgagccaaggctc 6473114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 6457299 - 6457372
Alignment:
Q  153 tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaa 226  Q
    |||||||||| ||| |||||||||||||| ||||||||||| || |||| | | |||||| ||||||| |||||    
T  6457299 tcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatgatcattataaataccgaa 6457372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 376
Target Start/End: Original strand, 6523423 - 6523542
Alignment:
Q  257 ttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaacttc 356  Q
    ||||| |||||||||  | |||||||| | ||| | ||||||||||||    || ||||||||||| | ||||||||||||| | ||||| ||| ||||     
T  6523423 ttgtttggtaacaatatctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatgatctctttcaaatacttt 6523522  T
Q  357 ttaacctttggaatcacatc 376  Q
    ||||| |||| |||||||||    
T  6523523 ttaacttttgaaatcacatc 6523542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 364
Target Start/End: Original strand, 6528119 - 6528330
Alignment:
Q  153 tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaaccggagtcagcgttagaatccatag 252  Q
    |||||||| | ||| || |||||| |||||| ||| ||||||||   | || | |||| | |||||||||| |||||  | ||||| || |||||  |||    
T  6528119 tcaatcttagcaagcacagcaattgcataaacaaaatatcccaaagtaccatgatgattattataaattccaaaaccatactcagcatttgaatcagtag 6528218  T
Q  253 acccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaa 352  Q
    | |||||||  |||| ||| || |||||||| | ||| |  ||||||||||| || || ||||||||||| | ||||||||||||  | || || ||| |    
T  6528219 agccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctccttcaaata 6528318  T
Q  353 cttcttaacctt 364  Q
    ||||||||||||    
T  6528319 cttcttaacctt 6528330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 13035853 - 13035808
Alignment:
Q  294 agaaatccattcccatttaaagttccatctaaccaaggctcaatgg 339  Q
    ||||||||||| ||||| ||||||||||| | ||||||||||||||    
T  13035853 agaaatccatttccattaaaagttccatcaagccaaggctcaatgg 13035808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 3754080 - 3754004
Alignment:
Q  153 tcaatctttgtaagaactgcaattccataaagaaagtatcccaagtgatcagggtgatcactataaattccgaaacc 229  Q
    |||||||||| |||||| ||||||||||||||||| || || || |||| | | |||||| |||||||||| |||||    
T  3754080 tcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattataaattccaaaacc 3754004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 360
Target Start/End: Complemental strand, 9665454 - 9665350
Alignment:
Q  256 cttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaactt 355  Q
    |||||| ||| ||||| || |||||||| | ||| |  |||||||||||  | || ||||||||||| ||||| || ||||| |||||||| ||||||||    
T  9665454 cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt 9665355  T
Q  356 cttaa 360  Q
    |||||    
T  9665354 cttaa 9665350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 360
Target Start/End: Complemental strand, 13536478 - 13536374
Alignment:
Q  256 cttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttcttttaaaaactt 355  Q
    |||||| ||| ||||| || |||||||| | ||| |  |||||||||||  | || ||||||||||| ||||| || ||||| |||||||| ||||||||    
T  13536478 cttgtttggttacaattcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttcaaaaactt 13536379  T
Q  356 cttaa 360  Q
    |||||    
T  13536378 cttaa 13536374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 35231521 - 35231462
Alignment:
Q  317 tccatctaaccaaggctcaatggtttcttttaaaaacttcttaacctttggaatcacatc 376  Q
    |||||| | ||||||||||||| | ||||| ||| |||||||||| ||||||||||||||    
T  35231521 tccatcaagccaaggctcaatgatctctttcaaatacttcttaacttttggaatcacatc 35231462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 35243166 - 35243102
Alignment:
Q  312 aaagttccatctaaccaaggctcaatggtttcttttaaaaacttcttaacctttggaatcacatc 376  Q
    ||||||||||| | |||| ||||||||   ||||| ||| |||||||||| ||||||||||||||    
T  35243166 aaagttccatcaagccaaagctcaatgacctctttcaaatacttcttaacttttggaatcacatc 35243102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 35244341 - 35244309
Alignment:
Q  89 caagttcataaaatctttcataagtgaataggc 121  Q
    ||||||||||||||||||||| |||||||||||    
T  35244341 caagttcataaaatctttcatgagtgaataggc 35244309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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