View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854-Insertion-11 (Length: 237)
Name: NF4854-Insertion-11
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854-Insertion-11 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 6226452 - 6226683
Alignment:
| Q |
6 |
catgaagtttatggcaaatttcccactccggcctatacggtgaagatagttttcaggcacagttgggagatcatagtttacaatcagagacactttatgc |
105 |
Q |
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| T |
6226452 |
catgaagtttatagcaaatttctcactccggcctatacggtgaagatagttttcaggcacagttgggagatcatagtttacgatcagagacgctttatgc |
6226551 |
T |
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| Q |
106 |
acatctgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagccagactgggnnnnnnnctcgcgcgtaacgatatccctgatgtcctggg |
205 |
Q |
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| T |
6226552 |
acatctgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagctagactgggaaaaaaactcgcgcgtaactatatccctaatgtcctggg |
6226651 |
T |
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| Q |
206 |
nnnnnnncttgaggatgacaaacactttatga |
237 |
Q |
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| T |
6226652 |
aaaaaaacttgaggatgacaaacactttatga |
6226683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 6233710 - 6233867
Alignment:
| Q |
6 |
catgaagtttatggcaaatttcccactccggcctatacggtgaagatagttttcaggcacagttgggagatcatagtttacaatcagagacactttatgc |
105 |
Q |
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| T |
6233710 |
catgaagtttatagcaaatttcccactccggcctatatggttaagatagttttcaggcacagttgggagatcatagtttacgaccagagacgctttatgc |
6233809 |
T |
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| Q |
106 |
acatctgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagccagact |
163 |
Q |
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| T |
6233810 |
aaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagact |
6233867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 6240841 - 6240967
Alignment:
| Q |
39 |
tatacggtgaagatagttttcaggcacagttgggagatcatagtttacaatcagagacactttatgcacatctgcaccacaaagctgggggtcggtggta |
138 |
Q |
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| T |
6240841 |
tatacggtggagatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggta |
6240940 |
T |
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| Q |
139 |
atgagaacttgaggagagccagactgg |
165 |
Q |
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| T |
6240941 |
atgagaatctgaggagaaccagactgg |
6240967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 6249233 - 6249291
Alignment:
| Q |
27 |
cccactccggcctatacggtgaagatagttttcaggcacagttgggagatcatagttta |
85 |
Q |
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| T |
6249233 |
cccactacgacctatacggtggagatagttttcaggttgagttggtagatcatagttta |
6249291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 17545636 - 17545504
Alignment:
| Q |
34 |
cggcctatacggtgaagatagttttcaggcacagttgggagatcatagtttacaatcagagacactttatgcacatctgcaccacaaagctgggggtcgg |
133 |
Q |
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| T |
17545636 |
cggcctatacgataaagatagttttcaggcgcagctgggagatcatagtttacgatcagagatactttatgcacatctgtaccacaaaccaaggggtctg |
17545537 |
T |
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| Q |
134 |
tggtaatgagaacttgaggagagccagactggg |
166 |
Q |
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| T |
17545536 |
tggtaatgagaacatgaggagagccagactggg |
17545504 |
T |
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