View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4854-Insertion-12 (Length: 442)
Name: NF4854-Insertion-12
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854-Insertion-12 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Original strand, 28607364 - 28607795
Alignment:
| Q |
8 |
gatgggaccggctttataccttctacatcgaaatttttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggact |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607364 |
gatgggaccggctttataccttctacatcgaaatttttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggact |
28607463 |
T |
|
| Q |
108 |
ttagttctcactgtgacaggttttccagtcatagctcacaccctttctgagctcaaacttctatatactggtcttggtaaggttgcattaacaacagcta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28607464 |
ttagttctcactgtgacaggttttccagtcgtagctcacaccctttctgagctcaaacttctttatactggtcttggtaaggttgcattaacaacagcta |
28607563 |
T |
|
| Q |
208 |
tgatcagtgacacatatgcttggattttattcatattatttgttccattttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607564 |
tgatcagtgacacatatgcttggattttattcatattatttgttccattttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatt |
28607663 |
T |
|
| Q |
308 |
tgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607664 |
tgttttcatttgcatctttgtggtgcatcctataatcgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtg |
28607763 |
T |
|
| Q |
408 |
gtgatgggactttttgttttctcatacataac |
439 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28607764 |
gtgatgggactttttgttttctcatacataac |
28607795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 422
Target Start/End: Complemental strand, 7590136 - 7589803
Alignment:
| Q |
87 |
aatgcttgtgtaatatggactttagttctcactgtgacaggttttccagtc-atagctcacaccctttctgagctcaaacttctatatactggtcttggt |
185 |
Q |
| |
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||||||| |||| || ||||||||||||| |||||||||||||||| | ||||| |||||||||| || ||||| ||||| ||||||| ||||||| |
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| T |
7590136 |
aatgcttatgtattactgactttagttctcgatgtgacaggttttccaatttatagcacacaccctttatgggctcatacttcactatactgatcttggt |
7590037 |
T |
|
| Q |
186 |
aaggttgcattaacaacagctatgatcagtgac--acatatgcttggattttattcatattatttgttccattttcagttaatggtacaagtgcaatata |
283 |
Q |
| |
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|| | ||||| ||| ||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||| ||||| || || | | | || |
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| T |
7590036 |
gag-----actaacagtagcaatgatcacggacgtacatatgcttggattttattcatgttatttcttccattttcaattaatcatataaaaggagttta |
7589942 |
T |
|
| Q |
284 |
tccagtgttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagagatgaatgg |
383 |
Q |
| |
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||||||||| | | |||||| |||| ||||||||||||||||| || ||| |||| || | |||| ||||||||||| |||||||| ||||| |
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| T |
7589941 |
ctcagtgttaatcgtcattatatttattttaatttgcatctttgtggtatattgtatcattgtcaaggccattgatcgcaagacaaaaagagattaatgg |
7589842 |
T |
|
| Q |
384 |
gatggtaaccaattagtctttgtggtgatgggacttttt |
422 |
Q |
| |
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||| |||||||| |||||||||| |||||| ||||| |
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| T |
7589841 |
aatgataaccaatatctctttgtggtcatgggaattttt |
7589803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 439539 - 439110
Alignment:
| Q |
8 |
gatgggaccggctttataccttctacatcgaaatttttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggact |
107 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| ||||| ||||| || | || |||||||| |
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| T |
439539 |
gatgggaccagctttataccttctacatcgaaaattttatggcaagggtgatggatctaatcttgaagaaagtacaataaatgtttatatattatggact |
439440 |
T |
|
| Q |
108 |
ttagttctcactgtgacaggttttccagtcatagctcacaccctttctgagctcaaacttctatatactggtcttggtaaggttgcattaacaacagcta |
207 |
Q |
| |
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|||||||| |||||||||||||||||||| ||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||| |||| | |
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| T |
439439 |
ttagttcttactgtgacaggttttccagttgtagtccacaccctgtctgagcttaaacttctctatactggtcttgggaaggttgcattaacatcagcca |
439340 |
T |
|
| Q |
208 |
tgatcagtgacacatatgcttggattttattcatattatttgttccattttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatt |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||| |
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| T |
439339 |
tgatcagtgacacatatgcttggattttattcgtattatttgttccattttcagttaatggtacagaggcaatatacacgacgttaagcactgcaatatt |
439240 |
T |
|
| Q |
308 |
tgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtg |
407 |
Q |
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| | ||||||| ||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
439239 |
tatattcatttccatctttgtggtgcatcctatcattgtaaaggtcattgatcgcaagacagaaagagatgaatgggatgctaaccaactagtttttgtc |
439140 |
T |
|
| Q |
408 |
gtgatgggactttttgttttctcatacata |
437 |
Q |
| |
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| ||||| ||| | |||||||||| |||| |
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| T |
439139 |
tttatgggccttatggttttctcattcata |
439110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 13658739 - 13659173
Alignment:
| Q |
8 |
gatgggaccggctttataccttctacatcgaaatttttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggact |
107 |
Q |
| |
|
||||||||| | |||||| ||||||||||||| ||||||||||| |||||||||||| |||||||| | |||| || | || | || ||||||| |
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| T |
13658739 |
gatgggaccaccgttatacattctacatcgaaaattttatggaaatggtgatggatctaaacttgaaagatgcacaatgaaagtttatatagaatggact |
13658838 |
T |
|
| Q |
108 |
ttagttctcactgtgacaggttttccagtcatagctcacaccctttctgagctcaaacttctatatactggtcttggtaaggttgcattaacaacagcta |
207 |
Q |
| |
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||| |||||||||||||| ||||| || | |||||||||| ||||||||||| |||||||| |||||||||||||| | |||||||||| || ||| |
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|
| T |
13658839 |
ttaattctcactgtgacaagtttttcaattgtagctcacacactttctgagctaaaacttcttaatactggtcttggtcaaactgcattaacagcatcta |
13658938 |
T |
|
| Q |
208 |
tgatcagtgacacatatgcttggattttattcatattatttgttccattttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatt |
307 |
Q |
| |
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||||||||||||||||| |||||||||||| || | | || ||||||| ||| |||||||| | | |||||||| ||||||||||||| || ||||| |
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|
| T |
13658939 |
tgatcagtgacacatattcttggattttatacacagttattcttccattctcaattaatggtgtaggggcaatatactcagtgttaagcaccgtcatatt |
13659038 |
T |
|
| Q |
308 |
tgttttcatttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtg |
407 |
Q |
| |
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||||||||||||||| ||| |||||| ||| || |||| ||| ||||| |||||||||| ||||||||||||||| | | ||| ||||| ||||| | |
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| T |
13659039 |
tgttttcatttgcatttttctggtgcgtccgatcattgtaaagttcattgatcgcaagactgaaagagatgaatggaacgataaagaattactctttctt |
13659138 |
T |
|
| Q |
408 |
gtgatgggactttttgttttctcatacataacaga |
442 |
Q |
| |
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|||||||| ||||||||| ||||| ||||||||| |
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| T |
13659139 |
gtgatggggatttttgtttgctcatgcataacaga |
13659173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 13651262 - 13651686
Alignment:
| Q |
20 |
tttataccttctacatcgaaatttttatggaaagggtgatggatctgaacttgaagaaaatacaacaaatgcttgtgtaatatggactttagttctcact |
119 |
Q |
| |
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||||||| |||||||||| | |||||||| || ||||||||| || |||| ||||||| ||||| |||| || |||| ||||||||||||||||||| |
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|
| T |
13651262 |
tttatacaatctacatcgatacttttatggcaatggtgatggacctaaactcgaagaaagtacaatgaatgtttatgtacaatggactttagttctcact |
13651361 |
T |
|
| Q |
120 |
gtgacaggttttccagtcatagctcacaccctttctgagctcaaacttctatatactggtcttggtaaggttgcattaacaacagctatgatcagtgaca |
219 |
Q |
| |
|
||||| ||||| || | |||||||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
13651362 |
atgacaagtttttcaattgtagctcacacactttccgagctcaaacttcttaataccggtcttggtcagacggcattaacaacagctatgatcagtgaca |
13651461 |
T |
|
| Q |
220 |
catatgcttggattttattcatattatttgttccattttcagttaatggtacaagt---gcaatatatccagtgttaagcactgtaatatttgttttcat |
316 |
Q |
| |
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||||| ||||| |||||| || | || | ||||||||||| ||| ||||| | | |||||||| |||||||||| || || ||||||||||||| |
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| T |
13651462 |
catattcttgggttttatacacaataactcttccattttcaattactggtagtattgtggcaatatactcagtgttaagtaccgtcgtatttgttttcat |
13651561 |
T |
|
| Q |
317 |
ttgcatctttgtggtgcatcctataattgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgtggtgatggga |
416 |
Q |
| |
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|||||| |||||||||| |||||| || | ||| |||||| |||||||| ||||||||||||||||||| ||| |||||| ||||| | ||||||| |
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| T |
13651562 |
ttgcatttttgtggtgcgtcctatcatcgtaaaggtcattgatcgcaagcttgaaagagatgaatgggatgataaacaattactctttcttctgatgggg |
13651661 |
T |
|
| Q |
417 |
ctttttgttttctcatacataacag |
441 |
Q |
| |
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| ||||||| |||||| ||||||| |
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|
| T |
13651662 |
atgtttgtttgctcatatataacag |
13651686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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