View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854-Insertion-14 (Length: 171)
Name: NF4854-Insertion-14
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854-Insertion-14 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 6156325 - 6156488
Alignment:
| Q |
8 |
agtgttgcctccggtaggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcga |
107 |
Q |
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| T |
6156325 |
agtgttgcctccggtaggtcctaattttgcaagaccaaaatcggacagttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcga |
6156424 |
T |
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| Q |
108 |
tagataacagacggttcagcattacgatggagatactcaagaccccgagctgctccaacagcaa |
171 |
Q |
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| T |
6156425 |
tagataacagacggttcagcattacaatggagatactcaagaccccgagctgctccaacagcaa |
6156488 |
T |
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Target: chr3 (Bit Score: 57; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 54032016 - 54032164
Alignment:
| Q |
23 |
aggtcctaattttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcgatagataacagacggt |
122 |
Q |
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| T |
54032016 |
aggtcctagcttagcaagcccaaaatctgacagttttgggctgaagtcgctgtctaataagatgtttgcagattttaagtctcgatatatgacaggcgga |
54032115 |
T |
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| Q |
123 |
tcagcattacgatggagatactcaagaccccgagctgctccaacagcaa |
171 |
Q |
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| T |
54032116 |
tctgctttacagtggagatactcaaggccacgagctgctccaacagcaa |
54032164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 56020654 - 56020783
Alignment:
| Q |
36 |
gcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcgatagataacagacggttcagcattacgat |
135 |
Q |
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| T |
56020654 |
gcaagcccgaaatctgacagttttgcactgaagtcatgttccagtaaaatgtttgaagatttcaagtctcgatggataaccggtggatcaacttgacagt |
56020753 |
T |
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| Q |
136 |
ggagatactcaagaccccgagctgctccaa |
165 |
Q |
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| T |
56020754 |
ggagatactcaagaccttgagctgctccaa |
56020783 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 21139474 - 21139538
Alignment:
| Q |
33 |
tttgcaagaccaaaatcagacagttttgcgttgaagtcgttgtccaataaaatgttggcagattt |
97 |
Q |
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| T |
21139474 |
tttgctagtccaaaatcagagagttttgcattgaaatctttgtccaataagatgttggaagattt |
21139538 |
T |
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