View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854-Insertion-15 (Length: 412)
Name: NF4854-Insertion-15
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854-Insertion-15 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 11618819 - 11618590
Alignment:
| Q |
8 |
ggactagttggagggaagctaaaatttctggactaagttaatcttcaccatataatttttgtaaacaatcacaatacttatacttaaatgcatgcatatg |
107 |
Q |
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| T |
11618819 |
ggactagttggagggaagctaaaatttctggactaagttaatcttcaccatataatttttgtaaacaatcacaatacttatacttaaatgcatgcatatg |
11618720 |
T |
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| Q |
108 |
taactttggactttgaggagattactactttgacattcaaaataatttgtagcgttgaaaatgaacatatcatccnnnnnnngacatagggtaaaaccac |
207 |
Q |
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| T |
11618719 |
taactttggactttgaggagattactactttgacattcaaaataatttgtagcgttgaaaatgaacatatcatccaaaaaaagacatagggtaaaaccac |
11618620 |
T |
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| Q |
208 |
aaacatttaacatctcaacttctctaccgt |
237 |
Q |
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| T |
11618619 |
aaacatttaacatctaaacttctctcccgt |
11618590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 239 - 412
Target Start/End: Complemental strand, 11618554 - 11618381
Alignment:
| Q |
239 |
aacatattgtccagttgaatttcagccacttgtctttttctattaattgatgtttcaataattaaaaagaatataaacaatgtgcatcgaaatccctctg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11618554 |
aacatattgtccagttgaatttcagccacttgtctttttctattaattgaagtttcaataattaaaaagaatataaacaatgtgcatcgaaatccctctg |
11618455 |
T |
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| Q |
339 |
ttcaaaacctcataggagagaatttatgtccgctttaatctttaaatttctcaaattgaattagccacctaaga |
412 |
Q |
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| T |
11618454 |
ttcaaaacctcataggagagagtttatgtccgctttaatctttaaatttctcaaattgaattagccacctaaga |
11618381 |
T |
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