View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854-Insertion-2 (Length: 980)

Name: NF4854-Insertion-2
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4854-Insertion-2
NF4854-Insertion-2
[»] chr6 (8 HSPs)
chr6 (154-609)||(34932643-34933098)
chr6 (691-974)||(34933180-34933463)
chr6 (706-786)||(34926734-34926816)
chr6 (60-101)||(34932538-34932579)
chr6 (52-89)||(34119028-34119065)
chr6 (52-89)||(34146187-34146224)
chr6 (52-89)||(34158803-34158840)
chr6 (843-888)||(34926842-34926885)
[»] chr4 (3 HSPs)
chr4 (50-87)||(38648661-38648698)
chr4 (216-290)||(38648614-38648688)
chr4 (50-83)||(48430881-48430914)
[»] chr3 (1 HSPs)
chr3 (56-89)||(52805612-52805645)


Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 154 - 609
Target Start/End: Original strand, 34932643 - 34933098
Alignment:
Q  154 attcttctcactttctatttcatcaagccattgctgaagcgataccagttcgggatcctgtgggtttaaagagtaagtaatattaaagaactagaatacg 253  Q
    ||||||||||| |||||||| |||||||  || |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34932643 attcttctcacattctattttatcaagcattttctgaagcgatgccagttcgagatcctgtgggtttaaagagtaagtaatattaaagaactagaatacg 34932742  T
Q  254 cacaaagaaactaaaatagtgaaactagaattaaaagaaagcatttgctacaggccccagaaaagcttgcctcggctttaaacacaggaatgttgtcgaa 353  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34932743 cacaaagaatctaaaattgtgaaactagaatcaaaagaaagcatttgctacaggccccagaaaagcttgcctcggctttaaacacaggaaggttgtcgaa 34932842  T
Q  354 catgtgcgcaggagttattccgtgtgcgtatctcgatgggcatcccgctgagtatctcatctttgcgctatagatgttgaagatttgggagagagtcggc 453  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34932843 catgtgcgcaggagttattccgtgtgtgtatctcgatgggcatcccgctgagtatctcatctttgcactatagatgttgaagatttgggagagagtcggc 34932942  T
Q  454 ttcgcagataatatgaaagaacagaattgttagatggtaattagatgatgatgatgatatgtactaattaattaaacacactctatcaaaactaatataa 553  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34932943 ttcgcagataatatgaaagaacaaaattgttagatggtaattagatgatgatgatgatatgtactaattaattaaacacactctatcaaaactaatataa 34933042  T
Q  554 tcattccatcaaagaagagaaaatcccgaattcataaggtttaaaccctaaccccc 609  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34933043 tcattccatcaaagaagagaaaatcccgaattcacaaggtttaaaccctaaccccc 34933098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 691 - 974
Target Start/End: Original strand, 34933180 - 34933463
Alignment:
Q  691 acttacatacatacctgcaaccctagaagaagaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgag 790  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34933180 acttacatacatacctgcaaccctagaagaacaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgag 34933279  T
Q  791 cctctctatttatgaatgaacatgtgccatttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattggttttcatgccttc 890  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  34933280 cctctctatttatgaatgaacatgtgccctttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcatt-gttttcaagccttc 34933378  T
Q  891 attacttgaaatcattccatgagagaacaacagaaagagacacatatgataatcaacttgagtttggac-aaataaagaagaaga 974  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  34933379 attacttgaaatcattccatgagagaacaacagaaagagacatatatgataatcaacttgagttttgacaaaataaagaagaaga 34933463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 706 - 786
Target Start/End: Original strand, 34926734 - 34926816
Alignment:
Q  706 tgcaaccctagaagaagaagtgt--gtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcc 786  Q
    |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  34926734 tgcaacccgagaagaacaagtgtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagcc 34926816  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 34932538 - 34932579
Alignment:
Q  60 ttaaacttgaatcaaaagcattgctaaagggcccataacaat 101  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  34932538 ttaaatttgaatcaaaagcattgctaaagagcccataacaat 34932579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 34119065 - 34119028
Alignment:
Q  52 taaaattgttaaacttgaatcaaaagcattgctaaagg 89  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  34119065 taaaattgtgaaacttgaatcaaaatcattgctaaagg 34119028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 34146224 - 34146187
Alignment:
Q  52 taaaattgttaaacttgaatcaaaagcattgctaaagg 89  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  34146224 taaaattgtgaaacttgaatcaaaatcattgctaaagg 34146187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 34158840 - 34158803
Alignment:
Q  52 taaaattgttaaacttgaatcaaaagcattgctaaagg 89  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  34158840 taaaattgtgaaacttgaatcaaaatcattgctaaagg 34158803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 888
Target Start/End: Original strand, 34926842 - 34926885
Alignment:
Q  843 ctctcctgttcttttttgtaagtgtttttcattggttttcatgcct 888  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34926842 ctctcctgttctttt-tgtaagtgtttttcatt-gttttcatgcct 34926885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 38648661 - 38648698
Alignment:
Q  50 actaaaattgttaaacttgaatcaaaagcattgctaaa 87  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  38648661 actaaaattgtgaaacttgaatcaaaagcattgctaaa 38648698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 38648614 - 38648688
Alignment:
Q  216 ggtttaaagagtaagtaatattaaagaactagaatacgcacaaagaaactaaaatagtgaaactagaattaaaag 290  Q
    |||||| ||| ||| ||||||||||||| |  |||| | |||||||||||||||| |||||||| |||| |||||    
T  38648614 ggtttatagattaattaatattaaagaattcaaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaag 38648688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 48430881 - 48430914
Alignment:
Q  50 actaaaattgttaaacttgaatcaaaagcattgc 83  Q
    ||||||||||| ||||||||||||||||||||||    
T  48430881 actaaaattgtgaaacttgaatcaaaagcattgc 48430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 52805612 - 52805645
Alignment:
Q  56 attgttaaacttgaatcaaaagcattgctaaagg 89  Q
    ||||| ||||||||||||||||||||||||||||    
T  52805612 attgtaaaacttgaatcaaaagcattgctaaagg 52805645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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