View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854-Insertion-3 (Length: 877)
Name: NF4854-Insertion-3
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 10 - 692
Target Start/End: Original strand, 34077175 - 34077856
Alignment:
| Q |
10 |
atcaatcatacatatgacttgccaaacgtggtttagcaacagcaatcaaaggatgaaccttaggcatagtcattccataaacttcttgagtatcaatatc |
109 |
Q |
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| T |
34077175 |
atcaatcatacatatgacttgccaaacgtggtttagcaacagcaatcaaaggatgaaccttaggcatagtcattccataaacttcttgagtatcaatatc |
34077274 |
T |
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| Q |
110 |
ttgatgattcaaacccttaggtgggttccaatcaaaacaatgaaacagtcgagctaaagccattaaaaccaaagtgactccaagtggtgcacccggacat |
209 |
Q |
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| T |
34077275 |
ttgatgattcaaacccttaggtgggttccaatcaaaacaatgaaacaatcgagccaaagccattaaaaccaaagtgactccaagtggtgcacccggacac |
34077374 |
T |
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| Q |
210 |
ttgcgttttccagcactaaaaggcagtatcttaaaatcagctccatggctgatctcaactcgactcccgctagttgaaaaatgcctctccggcctaaact |
309 |
Q |
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| T |
34077375 |
ttgcgttttccagcactaaaaggcagtatcttaaaatcagctccatggctgatctcaactcgactcccgctagttgaaaaatgcctctccggcctaaact |
34077474 |
T |
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| Q |
310 |
catccacattttcccaaatcttcgtgtttcgacctaatccatgggtgttgatgaagactcgagtcttagaaggaatgcagtagccgttgatagtagtagg |
409 |
Q |
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| T |
34077475 |
catctacattttcccaaatcttcgtgtttcgacctaatccatgggtgttgatgaagactcgagtcttagaagggatgtagtagccgttgatagtagtagg |
34077574 |
T |
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| Q |
410 |
tcgaagagattcatgtggaatgaggaatggccctgctgggtgcatgcggaaagtttcacgtacaacacatcgtaggtaattaaggttaggcaaatcagat |
509 |
Q |
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| T |
34077575 |
tcgaagagattcatgtggaatgaggaatggccctgctggatgcatgcggaaagtttcacgtacaacacatcgtaggtaattaaggttaggcaaatcagat |
34077674 |
T |
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| Q |
510 |
tcaatcaccattctattagggccaaccactacatcaagctcttcttggattttgtgaaggacgtgtggatgtttgattacctctgtcatcgcccattcat |
609 |
Q |
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| T |
34077675 |
tcaatcaccattctattagggccaaccactacatcaagctcttcttggattttgtgaagaacgtgtggatgtttgattacctctgtcatcgcccattcat |
34077774 |
T |
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| Q |
610 |
tagtaacggctgaagtgtccgttgcagccgcgatcatgtcctaacatatttagtataactacattactctcaatcattacatg |
692 |
Q |
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| T |
34077775 |
tagtaacggctgaagtgtctgttgcagccgcgatcatgtcctaa-atatttagtataactacattattttcaatcattacatg |
34077856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 724 - 877
Target Start/End: Original strand, 34077886 - 34078045
Alignment:
| Q |
724 |
gtcatacctga-tcaaagcttttatctcaacatcatccatatgctcttttccatcttca-caggcaaagacaataaaatat-cac-aaatcaagttc-tc |
818 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || |
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| T |
34077886 |
gtcatacctgaatcaaagcttttatctcaacatcatccatatgctcttttccatcttcaccaggcaaagacaataaaatatccacaaaatcaagttcttc |
34077985 |
T |
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| Q |
819 |
atcac-ttttcctatcccttcctaatcttt-cttgcctttcaatgttcctccaagaatttt |
877 |
Q |
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||||| |||||||||||||| || |||||| |||||||||| ||||| || |||||||||| |
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| T |
34077986 |
atcactttttcctatccctttcttatctttccttgcctttctatgtt-cttcaagaatttt |
34078045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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