View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854-Insertion-5 (Length: 646)

Name: NF4854-Insertion-5
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4854-Insertion-5
NF4854-Insertion-5
[»] chr4 (3 HSPs)
chr4 (148-646)||(34522730-34523228)
chr4 (8-87)||(34523289-34523368)
chr4 (282-341)||(32992387-32992446)
[»] chr8 (6 HSPs)
chr8 (293-488)||(38198506-38198700)
chr8 (237-352)||(29857454-29857568)
chr8 (237-354)||(40993704-40993821)
chr8 (293-341)||(5176599-5176648)
chr8 (311-344)||(23990472-23990505)
chr8 (311-340)||(43506411-43506440)
[»] chr2 (5 HSPs)
chr2 (228-488)||(20936547-20936805)
chr2 (293-488)||(24060492-24060684)
chr2 (307-388)||(12301236-12301316)
chr2 (237-343)||(42599696-42599800)
chr2 (231-299)||(5330975-5331042)
[»] chr3 (9 HSPs)
chr3 (293-435)||(16772696-16772837)
chr3 (293-488)||(54886722-54886918)
chr3 (309-489)||(44260659-44260847)
chr3 (269-377)||(49987193-49987299)
chr3 (368-435)||(49987103-49987170)
chr3 (286-341)||(42510633-42510689)
chr3 (228-302)||(44260825-44260897)
chr3 (293-341)||(54994720-54994770)
chr3 (309-345)||(26614875-26614911)
[»] chr6 (6 HSPs)
chr6 (259-464)||(14345007-14345215)
chr6 (321-377)||(20795084-20795139)
chr6 (293-341)||(18133040-18133090)
chr6 (293-341)||(21535819-21535869)
chr6 (279-341)||(4303038-4303101)
chr6 (339-383)||(20807172-20807215)
[»] chr1 (2 HSPs)
chr1 (309-404)||(10045955-10046049)
chr1 (279-341)||(36346592-36346655)
[»] chr7 (5 HSPs)
chr7 (252-487)||(30640693-30640925)
chr7 (309-342)||(7175745-7175778)
chr7 (293-341)||(17901170-17901220)
chr7 (293-335)||(47746140-47746182)
chr7 (293-345)||(6398632-6398684)
[»] scaffold0026 (1 HSPs)
scaffold0026 (293-341)||(79632-79682)


Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 148 - 646
Target Start/End: Complemental strand, 34523228 - 34522730
Alignment:
Q  148 atagggatatttattatttttacaacaaatgtgttagccttcttatgattgcggttatgggtggttatgtgtttactatgtatagaaaggaaatgagaaa 247  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||    
T  34523228 atagggatatttattatttttaaaacaaatgtgttagccttcttatgattgcggttatgggcggttatgtgtttactatgtatagaaaggaaaggcgaaa 34523129  T
Q  248 ctgattatgggatagttttggaatggttttagaagggagagatcaaagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagta 347  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34523128 ctgattatgggatagttttggaatggttttcgaagggagagaccaaagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagta 34523029  T
Q  348 attgtgtcataatatctctttccttagtttatgtgtgaattctacattatctatagtttatgtaattgtttgttgtaaatgtttctgctattaataaaag 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34523028 attgtgtcataatatctctttccttagtttatgtgtgaattctacattatctatagtttatgtaattgtttgttgtaaatgtttctgctattaataaaag 34522929  T
Q  448 tctgtttctacagttaagttgtatttttgtaccagtttctatcaaaacgtgtagtagcattttctccttcaccagagtgtgaatcccgatcctataactt 547  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34522928 tcagtttctacagttaagttgtatttttgtaccagtttctatcaaaatgtgtagtagcattttctccttcaccagagtgtgaatcccgatcctctaactt 34522829  T
Q  548 cttcaactatagagggttatttgtgtgccgaagatatgtacagctacttatttttctagtatgtacaagttaaagatgtttatttatctacctgtaata 646  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  34522828 cttcaactatagagggttatttgtgtgccgaagatatgtaaagcatcttatttttctagtatgtatgagttaaagatgtttatttatctacctgtaata 34522730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 34523368 - 34523289
Alignment:
Q  8 tgattttcatagaattattaaaaataactctgactataaagtagtttgtcaatttcccaacataaatagccaacagaagc 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34523368 tgattttcatagaattattaaaaataactctgactataaagtagtttgtcaatttcccaacataaatagccaacagaagc 34523289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 32992387 - 32992446
Alignment:
Q  282 gggagagatcaaagctctcgagttcttggagggagaga-ccaagactctcgaatttcttgg 341  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  32992387 gggagaga-caaagctctcgagttcttggagggagagacccaagactctcgaattccttgg 32992446  T

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Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 293 - 488
Target Start/End: Complemental strand, 38198700 - 38198506
Alignment:
Q  293 aagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagtttatgtgtgaattctac 392  Q
    |||||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||| |||||||     
T  38198700 aagctctcaaattcttggagggagagaccgatactctcgaatttcttggatagtaattgtgt-ataatatatctatcattagtttatgtgtaaattctat 38198602  T
Q  393 attatctatagtttatgtaattgtttgttgtaaatgtttctgctattaataaaagtctgtttctacagttaagttgtatttttgtaccagtttcta 488  Q
    |||||||||||| | |||| |||||||||||||  ||||| || || |||||||| | ||||||||  ||||  |||||||| |||||||||||||    
T  38198601 attatctatagtgtgtgtagttgtttgttgtaagcgtttcggccatcaataaaagacagtttctactattaaaatgtattttggtaccagtttcta 38198506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 29857568 - 29857454
Alignment:
Q  237 gaaatgagaaactgattatgggatagttttggaatggttttagaagggagagatcaaagctctcgagttcttggagggagagaccaagactctcgaattt 336  Q
    |||| |||||| |||||||||||||||||| ||||||||||   || |||||| ||| |||||| | |||||||||||||||||||| ||||||||||||    
T  29857568 gaaaggagaaagtgattatgggatagtttttgaatggttttgagagagagagaccaa-gctctctaattcttggagggagagaccaaaactctcgaattt 29857470  T
Q  337 cttggatagtaattgt 352  Q
    ||||||| | ||||||    
T  29857469 cttggatgggaattgt 29857454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 40993704 - 40993821
Alignment:
Q  237 gaaatgagaaactgattatgggatagttttggaatggttttagaagggagagatcaaagctctc-gagttcttggagggagagaccaagactctcgaatt 335  Q
    |||| |||||| |||  ||||||||||||| ||||| |||| |  |||||||| |||| ||||| || |||||||||||||||||||||||| ||   ||    
T  40993704 gaaaggagaaagtgacaatgggatagtttttgaatgattttgggtgggagagaccaaa-ctctcagaattcttggagggagagaccaagactatcaggtt 40993802  T
Q  336 tcttggatagtaattgtgt 354  Q
    |||||||||||||||||||    
T  40993803 tcttggatagtaattgtgt 40993821  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 5176648 - 5176599
Alignment:
Q  293 aagctctcgagttcttggagggagaga-ccaagactctcgaatttcttgg 341  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  5176648 aagctctcgaattcttggagggagagacccaagactctcgaattccttgg 5176599  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 23990472 - 23990505
Alignment:
Q  311 agggagagaccaagactctcgaatttcttggata 344  Q
    ||||||||||||||||||||||| ||||||||||    
T  23990472 agggagagaccaagactctcgaacttcttggata 23990505  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 43506440 - 43506411
Alignment:
Q  311 agggagagaccaagactctcgaatttcttg 340  Q
    ||||||||||||||||||||||||||||||    
T  43506440 agggagagaccaagactctcgaatttcttg 43506411  T

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Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 228 - 488
Target Start/End: Original strand, 20936547 - 20936805
Alignment:
Q  228 tatagaaaggaaatgagaaactgattatgggatagttttggaatggttttagaagggagagatcaaagctctcgagttcttggagggagagaccaagact 327  Q
    |||||||||||||  ||||| | || ||||||||||||| ||||||||||   ||| | ||| | |||||||||| |||||| ||||||||||  |||||    
T  20936547 tatagaaaggaaagaagaaaattatcatgggatagtttttgaatggttttgagaggtaaaga-ccaagctctcgaattcttgaagggagagac--agact 20936643  T
Q  328 ctcgaatttcttggatagtaattgtgtcataatatctctttccttagtttatgtgtgaattctacattatctatagtttatgtaa--ttgtttgttgtaa 425  Q
    || |||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||| | | |||  ||||||||| |||    
T  20936644 cttgaatttcttggatagtaattgtgt-ataatatctctttccttattttacgtgtgaattctatattatctatagtgtgtttaattttgtttgttttaa 20936742  T
Q  426 atgtttctgctattaataaaagtctgtttctacagttaagttgtatttttgtaccagtttcta 488  Q
    | |||||||| || | ||||| ||  |||||||  ||||  |||||||| ||||| |||||||    
T  20936743 acgtttctgcaatcagtaaaaatcaatttctactattaaaatgtattttggtacccgtttcta 20936805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 293 - 488
Target Start/End: Original strand, 24060492 - 24060684
Alignment:
Q  293 aagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagtttatgtgtgaattctac 392  Q
    |||||||| | |||||||| |||||| | |||||||||||||||||||||||||||||||||    |||| | ||||||||||||||||||||||||||     
T  24060492 aagctctctaattcttggatggagaggcgaagactctcgaatttcttggatagtaattgtgt----atatatttttccttagtttatgtgtgaattctat 24060587  T
Q  393 attatctatagt-ttatgtaattgtttgttgtaaatgtttctgctattaataaaagtctgtttctacagttaagttgtatttttgtaccagtttcta 488  Q
    |||||||||||| ||  |||||||||||||| ||| |||||||| || ||| ||||||  |||||||  ||||  |||| ||| |||| ||||||||    
T  24060588 attatctatagtgttgcgtaattgtttgttgaaaacgtttctgccatcaattaaagtcactttctactattaaagtgtactttggtactagtttcta 24060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 12301316 - 12301236
Alignment:
Q  307 ttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagtttatgtgtgaatt 388  Q
    |||||| |||||||  |||||| ||||||||||||||||||||||| | | ||||| ||||||||||  ||||| |||||||    
T  12301316 ttggagagagagactgagactcccgaatttcttggatagtaattgtat-acaatatttctttccttaaattatgcgtgaatt 12301236  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 42599800 - 42599696
Alignment:
Q  237 gaaatgagaaactgattatgggatagttttggaatggttttagaagggagagatcaaagctctcgagttcttgga-gggagagaccaagactctcgaatt 335  Q
    |||| |||||| |||| ||||||||||||| | |||||||| | |||||||   | ||||| || | |||||||| |||||| ||||||||||| |||||    
T  42599800 gaaaggagaaagtgatgatgggatagtttttgcatggttttgggagggaga---ccaagctttcaaattcttggaagggagaaaccaagactcttgaatt 42599704  T
Q  336 tcttggat 343  Q
    ||||||||    
T  42599703 tcttggat 42599696  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 5331042 - 5330975
Alignment:
Q  231 agaaaggaaatgagaaactgattatgggatagttttggaatggttttagaagggagagatcaaagctct 299  Q
    |||||||||| |||||| |||||||||||||||| | ||||  ||  ||||||||||||| ||||||||    
T  5331042 agaaaggaaaagagaaattgattatgggatagttattgaatatttaaagaagggagagat-aaagctct 5330975  T

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Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 293 - 435
Target Start/End: Complemental strand, 16772837 - 16772696
Alignment:
Q  293 aagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagtttatgtgtgaattctac 392  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||| ||| ||||||||||||||||||||     
T  16772837 aagctctcgaattcttggagagagagaccaagactctcgaatttcttgaataataattgtgt-ataatatttctatccgtagtttatgtgtgaattctat 16772739  T
Q  393 attatctatagtttatgtaattgtttgttgtaaatgtttctgc 435  Q
    |||||||||| | | ||||||||||||||||||  ||||||||    
T  16772738 attatctataatgtgtgtaattgtttgttgtaagcgtttctgc 16772696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 293 - 488
Target Start/End: Complemental strand, 54886918 - 54886722
Alignment:
Q  293 aagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatat--ctctttccttagtttatgtgtgaattct 390  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||| || |||||||| ||||| |||||||  |||| ||||||||||||||||||||| |    
T  54886918 aagctctcgaattcttggagcgagtgaccaagactctcgaattttttagatagtaactgtgt-ataatatatctctatccttagtttatgtgtgaattat 54886820  T
Q  391 acattatctatagtttatgtaattgtttgttgtaaatgtttctgctattaataaaagtctgtttctacagttaagttgtatttttgtaccagtttcta 488  Q
    | |||||||| ||| || |||||||||| ||||||| || ||||| || |||||||| | ||||||||  ||||  |||||||| |||||||||||||    
T  54886819 atattatctacagtgtacgtaattgtttcttgtaaacgtgtctgccatcaataaaagacagtttctaccattaaaatgtattttggtaccagtttcta 54886722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 309 - 489
Target Start/End: Complemental strand, 44260847 - 44260659
Alignment:
Q  309 ggagggagagaccaagactctcgaatttcttggat--------agtaattgtgtcataatatctctttccttagtttatgtgtgaattctacattatcta 400  Q
    |||||||||||||||| ||||||||||||||||||        ||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||    
T  44260847 ggagggagagaccaag-ctctcgaatttcttggatggtatcatagtaattgtat-ataatatctcttttcttagtttatctgtgaattctacattatcta 44260750  T
Q  401 tagtttatgtaat--tgtttgttgtaaatgtttctgctattaataaaagtctgtttctacagttaagttgtatttttgtaccagtttctat 489  Q
    |||| | |||| |  ||||||||| ||| |||||||| ||  ||||||||| |||||| || |||| |||||| || ||||| ||||||||    
T  44260749 tagtgtgtgtatttctgtttgttgcaaacgtttctgccatcgataaaagtcagtttctgcaattaaattgtatattggtaccggtttctat 44260659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 49987299 - 49987193
Alignment:
Q  269 aatggttttagaagggagagatcaaagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctcttt 368  Q
    ||||||||| |  |||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |    
T  49987299 aatggttttgggtgggagagaccaaa-ctctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgt-ataatatatctat 49987202  T
Q  369 ccttagttt 377  Q
    |||||||||    
T  49987201 ccttagttt 49987193  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 49987170 - 49987103
Alignment:
Q  368 tccttagtttatgtgtgaattctacattatctatagtttatgtaattgtttgttgtaaatgtttctgc 435  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||    
T  49987170 tccttagtttatgtgtgaattctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgc 49987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 42510633 - 42510689
Alignment:
Q  286 gagatcaaagctctcgagttcttggagggagaga-ccaagactctcgaatttcttgg 341  Q
    |||| ||| |||||||| |||||||||||||||| |||||||||||||||| |||||    
T  42510633 gagaacaatgctctcgaattcttggagggagagacccaagactctcgaattccttgg 42510689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 44260897 - 44260825
Alignment:
Q  228 tatagaaaggaaatgagaaactgattatgggatagttttggaatggttttagaagggagagatcaaagctctcga 302  Q
    |||||||| |||| |||||  |||||||||||||||||| |||||||||| | ||||||||| | ||||||||||    
T  44260897 tatagaaaagaaaggagaacatgattatgggatagtttt-gaatggttttgggagggagaga-ccaagctctcga 44260825  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 54994720 - 54994770
Alignment:
Q  293 aagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg 341  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  54994720 aagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 54994770  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 26614911 - 26614875
Alignment:
Q  309 ggagggagagaccaagactctcgaatttcttggatag 345  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  26614911 ggagggagagaccaagactctcaaatttctcggatag 26614875  T

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Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 259 - 464
Target Start/End: Original strand, 14345007 - 14345215
Alignment:
Q  259 atagttttggaatggttttagaagggagagatcaaagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcata 358  Q
    |||||||| |||||||||| | | ||||||| ||| |||||||| ||| |||||||| |||||||||||||||||||||||||||| || || ||| |||    
T  14345007 atagtttttgaatggttttgggacggagagaccaa-gctctcgaattcatggagggaaagaccaagactctcgaatttcttggataatatttatgt-ata 14345104  T
Q  359 atatctctttccttagtttatgtgtgaattctacattatctata--gt-ttatgtaat--tgtttgttgtaaatgtttctgctattaataaaagtctgtt 453  Q
     ||||||||| | ||||||||||||||||||||||||| |||||  || |  ||||||  ||||||||||||||| |||||| || |||||||||| ||     
T  14345105 ctatctcttttcgtagtttatgtgtgaattctacattaactataacgtgtggtgtaattgtgtttgttgtaaatgcttctgccatcaataaaagtcagtg 14345204  T
Q  454 tctacagttaa 464  Q
    |||||| ||||    
T  14345205 tctacaattaa 14345215  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 20795139 - 20795084
Alignment:
Q  321 caagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagttt 377  Q
    |||||||  |||||||||||||||||||| |||| || |||||||||||||||||||    
T  20795139 caagacttccgaatttcttggatagtaatggtgt-attatatctctttccttagttt 20795084  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 18133090 - 18133040
Alignment:
Q  293 aagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg 341  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  18133090 aagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 18133040  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 21535819 - 21535869
Alignment:
Q  293 aagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg 341  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  21535819 aagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 21535869  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 4303038 - 4303101
Alignment:
Q  279 gaagggagagatcaaagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg 341  Q
    ||||||||||| ||| |||||||| ||||||||||| ||||| |||||||||| |||||||||||    
T  4303038 gaagggagagaccaa-gctctcgaattcttggaggggagagaaccaagactctagaatttcttgg 4303101  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 20807215 - 20807172
Alignment:
Q  339 tggatagtaattgtgtcataatatctctttccttagtttatgtgt 383  Q
    ||||||||||| |||| || |||||||||||||||||||||||||    
T  20807215 tggatagtaatggtgt-attatatctctttccttagtttatgtgt 20807172  T

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Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 10046049 - 10045955
Alignment:
Q  309 ggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagtttatgtgtgaattctacattatctatagt 404  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||| ||||||||||    
T  10046049 ggagggagaggccaagactctcgaatttcttggatagtaattgtgt-ataatatctattttcttagtttatgtgggaattctacactatctatagt 10045955  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 36346655 - 36346592
Alignment:
Q  279 gaagggagagatcaaagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg 341  Q
    ||||||||||||||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||||    
T  36346655 gaagggagagatcaa-gctctcgaattcatggaggggagagaaccaagactctcgaatttcttgg 36346592  T

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Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 252 - 487
Target Start/End: Original strand, 30640693 - 30640925
Alignment:
Q  252 ttatgggatagttttggaatggttttagaagggagagatcaaagctctcgagttcttggaggg-agagaccaagactctcgaatttcttggatagtaatt 350  Q
    ||||||||||||||| |||||| ||| | ||||||||| ||| ||||| || |||||||| || |||||||||| ||||| |||||||||| |||||| |    
T  30640693 ttatgggatagtttttgaatgggtttgggagggagagaccaa-gctcttgaattcttggaaggcagagaccaaggctctcaaatttcttggctagtaact 30640791  T
Q  351 gtgtcataatatctctttccttagtttatgtgtgaattctacattatctatagtttatgtaattgtttgttgtaaatgtttctgctattaataaaagtct 450  Q
    |||| ||||||||| ||| |||||||||||||  |||||| |||||||  |||| | ||   ||||||||| |||||||||||   || ||||||||||     
T  30640792 gtgt-ataatatcttttttcttagtttatgtgcaaattctgcattatc--tagtgtgtgattttgtttgttctaaatgtttctatcatcaataaaagtca 30640888  T
Q  451 gtttctacagttaagttgtatttttgtaccagtttct 487  Q
    ||||| ||| ||||  |||||||| ||||| ||||||    
T  30640889 gtttcgacaattaaaatgtattttggtaccggtttct 30640925  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 7175778 - 7175745
Alignment:
Q  309 ggagggagagaccaagactctcgaatttcttgga 342  Q
    ||||||||||||||||||||||||||||||||||    
T  7175778 ggagggagagaccaagactctcgaatttcttgga 7175745  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 17901170 - 17901220
Alignment:
Q  293 aagctctcgagttcttggaggg-agag-accaagactctcgaatttcttgg 341  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  17901170 aagctctcgaattcttggaggggagagtaccaagactctcgaatttcttgg 17901220  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 47746182 - 47746140
Alignment:
Q  293 aagctctcgagttcttggagggagagaccaagactctcgaatt 335  Q
    |||| ||||| |||||||||||||||||||||| |||||||||    
T  47746182 aagccctcgaattcttggagggagagaccaagaatctcgaatt 47746140  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 6398632 - 6398684
Alignment:
Q  293 aagctctcgagttcttgga-gggagagaccaagactctcgaatttcttggatag 345  Q
    |||||||| | |||||||| ||||||||||||||||||| ||||||||||||||    
T  6398632 aagctctcaatttcttggacgggagagaccaagactctc-aatttcttggatag 6398684  T

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Target: scaffold0026 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 79632 - 79682
Alignment:
Q  293 aagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg 341  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  79632 aagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 79682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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