View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854-Insertion-6 (Length: 599)
Name: NF4854-Insertion-6
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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| [»] scaffold0459 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 164 - 599
Target Start/End: Original strand, 12319310 - 12319749
Alignment:
| Q |
164 |
tagagagtcatcacaaaaagtata----gtgtactagttttacacgttcaaagaaaaatcaacaagaaacatacatactataaatcaataacaacttaaa |
259 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
12319310 |
tagagagtcatcacaaaaagtatatatagtgtactagttttacacgttcaaagaaaaatcaacaagaaacacacatactacaaatcaataacaacttaaa |
12319409 |
T |
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| Q |
260 |
atgcaataacagaaactcacatatctagtccttgactttccatagcctcactaagacaagcaaccacatttcttcctatctagttttgttcttcaaggaa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
12319410 |
atgcaataacagaaactcacatatctagtccttgactttccatagcctcactaagacaagaaaccacatctcttcctatctagttttgttcttcaaggaa |
12319509 |
T |
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| Q |
360 |
ctttcaaactgcacaactgaactatgattatttacattagacataccaatcattgttaccaagtataatttatgcagagtcatacaaagcacaactcgtt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12319510 |
ctttcaaactgcacaactgaactatgattatttacattagacataccaatcattgttaccaagtataatttatgcagagtcatacaaagcacaactcgtt |
12319609 |
T |
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| Q |
460 |
aacattattttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtccaaataattgacatcttgtttacttgttagcata |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12319610 |
aacattattttacaagagaaagaaactaaatgtaaaggcatcattaaaattcttataattgatgtccaaataattgacatcttgtttacttgttagcata |
12319709 |
T |
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| Q |
560 |
tacttgtattgtgtttgcttccagtgtttacacaggacaa |
599 |
Q |
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| T |
12319710 |
tacttgtattgtgtttgcttccagtgtttacacaggacaa |
12319749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 12319037 - 12319097
Alignment:
| Q |
9 |
cccaaagtgaatagcacaaattatttttcatggataatctctacagaagcattcaactatt |
69 |
Q |
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| T |
12319037 |
cccaaagtgaatagcacaaattatttttcatggataatctctacagaagcattcaactatt |
12319097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 12319212 - 12319275
Alignment:
| Q |
87 |
aaatccaatcatctatatagtgtactgctcttcccctaagatcatctacaatacccttgaaagg |
150 |
Q |
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| T |
12319212 |
aaatccaatcatctttatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg |
12319275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 8990 - 9053
Alignment:
| Q |
87 |
aaatccaatcatctatatagtgtactgctcttcccctaagatcatctacaatacccttgaaagg |
150 |
Q |
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| T |
8990 |
aaatccaatcatctttatagtgtactgctcttcccctaaaatcatctacaatacccttgaaagg |
9053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 9066 - 9129
Alignment:
| Q |
87 |
aaatccaatcatctatatagtgtactgctcttcccctaagatcatctacaatacccttgaaagg |
150 |
Q |
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| T |
9066 |
aaatccaatcatctttatagtgtactgctcttcccgtaaaatcatctacaatacccttgaaagg |
9129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 9197 - 9241
Alignment:
| Q |
196 |
gttttacacgttcaaagaaaaatc-aacaagaaacatacatacta |
239 |
Q |
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| T |
9197 |
gttttacacgttcaaagaaaaatcaaacaagaaacataaatacta |
9241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 29809662 - 29809720
Alignment:
| Q |
11 |
caaagtgaatagcacaaattatttttcatggataatctctacagaagcattcaactatt |
69 |
Q |
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| T |
29809662 |
caaagtgaatagcacaaatgatttttcatggataatcattacagaggcattcaactatt |
29809720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 8015783 - 8015849
Alignment:
| Q |
269 |
cagaaactcacatatctagtccttgactttccatagcctcactaagacaagcaaccacatttcttcc |
335 |
Q |
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| T |
8015783 |
cagaaactcgcatatctagtccttgtctttccaaagcctcgttcaaacaagcaactacatctcttcc |
8015849 |
T |
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