View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854-Insertion-8 (Length: 513)

Name: NF4854-Insertion-8
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4854-Insertion-8
NF4854-Insertion-8
[»] chr4 (1 HSPs)
chr4 (6-513)||(15510033-15510540)


Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 6 - 513
Target Start/End: Original strand, 15510033 - 15510540
Alignment:
Q  6 caagttcttcatcaccatcgcctactcctgctccgagtactcatccaccaacaccggcaagttcttcatcaccatcaccatcacctactcctgttccgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15510033 caagttcttcatcaccatcgcctactcctgctccgagtactcatccaccaacaccagcaagttcttcatcaccatcaccatcacctactcctgttccgag 15510132  T
Q  106 tactggagttgagtttttaccactcactccagataagtctgggccgcctccaccgccaccgcatcaatcggttaatcctgttcaaatttttacacctata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  15510133 tactggagttgagtttttaccactcactccagataagtctgggccgcctccatcgccaccgcatcaatcggttaatccttttcaaatttttacacctata 15510232  T
Q  206 acaagtgttccaactccttcaccttcttttaacaatcaacacagaagcaaggaagcaattattttggctgcatgtatatcaggaatcataatcttgatag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15510233 acaagtgttccaactccttcaccttcttttaacaatcaacacagaagcaaggaagcaattattttggctgcatgtatatcaggaatcataatcttgatag 15510332  T
Q  306 catttgcgctttgttatcgcgaggctaaaagtagtaaagttaaaaaagatgacgggcctttgctcgtattaacctcaaatgattattctggaggtatgtt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15510333 catttgcgctttgttatcgcgaggctaaaagtagtaaagttaaaaaagatgacgggcctttgctcgtattaacctcaaatgattattctggaggtatgtt 15510432  T
Q  406 tatatatgttcatgttttttatgtttcctgaaagtatcgtaattacaaaacatatttccatatgtgttttcgttagttggtttgatgttggaatgtgtat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15510433 tatatatgttcatgttttttatgtttcctgaaagtatcgtaattacaaaacatatttccatatgtgttttcgttagttggtttgatgttggaatgtgtat 15510532  T
Q  506 ttccttag 513  Q
    ||||||||    
T  15510533 ttccttag 15510540  T

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