View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_high_11 (Length: 338)
Name: NF4854_high_11
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 8361868 - 8361557
Alignment:
| Q |
22 |
ttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaa |
121 |
Q |
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| T |
8361868 |
ttgttttgaaaatgtaatttgatgtgcaacacttgtttggttgatatgcattgcagata---tgggtggaaattgctcaccaggtgtttttttgaaacaa |
8361772 |
T |
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| Q |
122 |
tgtcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaatttttggcataatatatcagctctgaacctattttgatttaatt |
216 |
Q |
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| T |
8361771 |
tgtcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaatttttggcataatatatctgctctgaacctattttgattcaatt |
8361672 |
T |
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| Q |
217 |
gtcatgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggcttagtctaggagtatatatatagtgatgatcgcaactttgtg |
316 |
Q |
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| T |
8361671 |
ttcattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggcttagtctaggagtatatatataatgctgatcgcaaccttgtg |
8361572 |
T |
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| Q |
317 |
cttgggttgtgtttt |
331 |
Q |
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| T |
8361571 |
cttgggttgtttttt |
8361557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 8411619 - 8411440
Alignment:
| Q |
9 |
gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt |
108 |
Q |
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| T |
8411619 |
gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt |
8411520 |
T |
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| Q |
109 |
ttgtttgaaacaatgtcttagagaga--gagatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata |
186 |
Q |
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| T |
8411519 |
ttgtttgaaacaatgtcttagagagagagagatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata |
8411440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
| Q |
103 |
aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa |
199 |
Q |
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| T |
8415197 |
aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa |
8415098 |
T |
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| Q |
200 |
cctattttgatttaattgtcatgaaggctgaaacaatcact |
240 |
Q |
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| T |
8415097 |
cctatttagattcgattttcatgatggctgaaacaatcact |
8415057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
| Q |
172 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
254 |
Q |
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| T |
8350306 |
atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8350224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
| Q |
172 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
254 |
Q |
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| T |
8480807 |
atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8480889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 8405898 - 8405844
Alignment:
| Q |
9 |
gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggtt |
63 |
Q |
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| T |
8405898 |
gaagaatatgatgttgttttgaaaaaataatttgttgtgcaacacttgtttggtt |
8405844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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