View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4854_high_28 (Length: 235)
Name: NF4854_high_28
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1250168 - 1249942
Alignment:
| Q |
1 |
agggtaagatagaaaaacatgccttggtgtcagataaaccctcactgcctccccatgtcaaagacagaataaaaacaaaccctaaaaaccttattatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1250168 |
agggtaagatagaaaaacatgccttggtgtcagataaaccctcactgcctccccatgtcaaagacagaataaaaacaaaccctaaataccttattatatt |
1250069 |
T |
|
| Q |
101 |
ttcttttcagtttcacttgggcgagataaaacctttttgatgggttttactcaacgatagttgactacta------nnnnnnnngtaaattgtatatgtg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1250068 |
ttcttttcagtttcacttgggcgagataaaacctttttgatgggttttactcaacgatagttaactactatttattttatttttttaaattgtatatgtg |
1249969 |
T |
|
| Q |
195 |
aaacagtagttaactaccatcgaaaag |
221 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
1249968 |
aaacggtagttaactaccatcgaaaag |
1249942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43285498 - 43285458
Alignment:
| Q |
1 |
agggtaagatagaaaaacatgccttggtgtcagataaaccc |
41 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
43285498 |
agggtaaggtagaaaaacatgccttggtgtcagatataccc |
43285458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 43285412 - 43285375
Alignment:
| Q |
71 |
aaaaacaaaccctaaaaaccttattatattttcttttc |
108 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
43285412 |
aaaaacaaaccccaaaaaccttcttatattttcttttc |
43285375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University