View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_low_15 (Length: 315)
Name: NF4854_low_15
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 45169238 - 45169534
Alignment:
| Q |
1 |
ttaaatcgggggcaagtaagattaatttgggttatcatgcctccataaagtagatgatcacaaacatagcatagacatggagggaacaactctctgaagt |
100 |
Q |
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| T |
45169238 |
ttaaatcgggggcaagtaagattaatttgggttatcatgcctccataaagtagatgatcacaaacatagcatagacatggagggaacaactctctgaagt |
45169337 |
T |
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| Q |
101 |
gagatgaaagctccaaccatgcagttgtataattcaaagtttgtggaagaagaaaacataagccatggtccatgcatgaatgccatggcttatcccagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45169338 |
gagatgaaagctccaaccatgcagttgtataattcaaagtttgtggaagaagaaaacataagccatggtccatgcatgaatgccatggcttatcccagtt |
45169437 |
T |
|
| Q |
201 |
gactgtcaatatgtctttttcaatccgtgtgcaaatgcatattatgaattcttactgttaatacgctacactggcaaaattcattattaagttcttct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45169438 |
gactgtcaatatgtctttttcaatccgtgtgcaaatg-atattatgaattcttactgttaatacgctacactggcaaaattcattattaagttcttct |
45169534 |
T |
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