View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854_low_17 (Length: 311)

Name: NF4854_low_17
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4854_low_17
NF4854_low_17
[»] chr7 (19 HSPs)
chr7 (1-186)||(34328560-34328743)
chr7 (197-304)||(46413700-46413807)
chr7 (38-171)||(11561368-11561500)
chr7 (33-172)||(9384608-9384746)
chr7 (59-189)||(43466693-43466823)
chr7 (230-299)||(21882759-21882828)
chr7 (198-285)||(20125653-20125740)
chr7 (198-299)||(23611708-23611808)
chr7 (226-299)||(1985055-1985128)
chr7 (219-299)||(22631529-22631609)
chr7 (1-106)||(2377160-2377264)
chr7 (198-299)||(19511459-19511560)
chr7 (197-299)||(24250417-24250513)
chr7 (3-77)||(47664519-47664593)
chr7 (33-77)||(31589463-31589507)
chr7 (250-298)||(46297663-46297711)
chr7 (239-292)||(44601056-44601109)
chr7 (214-254)||(15127564-15127604)
chr7 (59-107)||(23284773-23284820)
[»] chr5 (16 HSPs)
chr5 (188-311)||(3040208-3040331)
chr5 (3-189)||(2190282-2190468)
chr5 (3-145)||(3039974-3040114)
chr5 (201-311)||(30735282-30735392)
chr5 (201-299)||(25493868-25493966)
chr5 (92-189)||(17066797-17066894)
chr5 (58-172)||(20419480-20419594)
chr5 (198-292)||(40519234-40519328)
chr5 (198-298)||(30700828-30700928)
chr5 (198-301)||(20359960-20360063)
chr5 (198-299)||(30071820-30071921)
chr5 (198-311)||(34280064-34280177)
chr5 (8-102)||(17066852-17066945)
chr5 (197-239)||(24402154-24402196)
chr5 (59-107)||(25994911-25994958)
chr5 (1-73)||(20419403-20419474)
[»] chr2 (21 HSPs)
chr2 (59-185)||(24582502-24582628)
chr2 (206-311)||(27007206-27007311)
chr2 (197-309)||(20143007-20143119)
chr2 (197-311)||(14131193-14131307)
chr2 (201-299)||(19945685-19945783)
chr2 (206-298)||(13716676-13716768)
chr2 (198-279)||(31264827-31264908)
chr2 (218-299)||(31845463-31845544)
chr2 (197-299)||(3167945-3168046)
chr2 (200-299)||(38320153-38320259)
chr2 (197-284)||(32975977-32976064)
chr2 (233-299)||(37714472-37714538)
chr2 (198-299)||(27407471-27407571)
chr2 (230-299)||(35457449-35457518)
chr2 (210-290)||(4434358-4434438)
chr2 (1-73)||(24582393-24582465)
chr2 (59-134)||(24582470-24582545)
chr2 (198-276)||(37899471-37899549)
chr2 (40-77)||(34233611-34233648)
chr2 (244-299)||(5881435-5881490)
chr2 (12-85)||(25770376-25770449)
[»] chr3 (20 HSPs)
chr3 (3-189)||(44798655-44798841)
chr3 (59-189)||(39926443-39926572)
chr3 (198-299)||(1632857-1632958)
chr3 (214-311)||(26442986-26443083)
chr3 (201-311)||(18271924-18272034)
chr3 (197-298)||(31192109-31192210)
chr3 (197-297)||(45852891-45852991)
chr3 (33-107)||(8004285-8004359)
chr3 (197-298)||(34905896-34905997)
chr3 (195-311)||(1713933-1714049)
chr3 (209-290)||(2671961-2672042)
chr3 (196-285)||(10593417-10593506)
chr3 (89-189)||(22754718-22754811)
chr3 (3-87)||(39926355-39926439)
chr3 (8-63)||(22754818-22754873)
chr3 (1-76)||(15042961-15043036)
chr3 (147-189)||(8004364-8004406)
chr3 (53-102)||(45004435-45004483)
chr3 (9-41)||(44798862-44798894)
chr3 (92-140)||(45004441-45004489)
[»] scaffold0194 (1 HSPs)
scaffold0194 (194-311)||(27063-27180)
[»] chr8 (10 HSPs)
chr8 (61-189)||(31271803-31271931)
chr8 (200-311)||(25124407-25124518)
chr8 (200-299)||(5718407-5718506)
chr8 (198-304)||(38585046-38585152)
chr8 (195-298)||(29414432-29414535)
chr8 (199-311)||(33543385-33543494)
chr8 (226-299)||(5686276-5686349)
chr8 (8-76)||(27459879-27459947)
chr8 (265-298)||(35393790-35393823)
chr8 (151-188)||(36933377-36933414)
[»] chr1 (24 HSPs)
chr1 (196-298)||(29657414-29657516)
chr1 (195-299)||(35413075-35413179)
chr1 (34-171)||(19062866-19063002)
chr1 (217-299)||(10061641-10061723)
chr1 (33-142)||(32306405-32306513)
chr1 (196-298)||(35149620-35149722)
chr1 (210-298)||(26469994-26470082)
chr1 (229-299)||(43537134-43537204)
chr1 (128-191)||(8360166-8360229)
chr1 (33-124)||(21258292-21258382)
chr1 (201-293)||(9113421-9113514)
chr1 (196-240)||(13085032-13085076)
chr1 (115-191)||(29694020-29694095)
chr1 (239-298)||(23906605-23906664)
chr1 (201-259)||(49401989-49402047)
chr1 (197-298)||(48852693-48852794)
chr1 (235-311)||(21540111-21540187)
chr1 (198-250)||(34475804-34475856)
chr1 (33-77)||(36816970-36817014)
chr1 (268-311)||(11470061-11470104)
chr1 (197-259)||(44958464-44958524)
chr1 (217-298)||(4684518-4684599)
chr1 (1-54)||(8360104-8360157)
chr1 (56-89)||(37919766-37919799)
[»] chr6 (11 HSPs)
chr6 (199-299)||(32871711-32871812)
chr6 (197-311)||(34713538-34713652)
chr6 (198-299)||(3855694-3855794)
chr6 (198-299)||(6784660-6784761)
chr6 (99-189)||(24624901-24624991)
chr6 (220-311)||(2130472-2130563)
chr6 (216-299)||(28867234-28867317)
chr6 (59-163)||(9863526-9863629)
chr6 (35-106)||(9863432-9863502)
chr6 (33-102)||(9875776-9875844)
chr6 (92-136)||(9875774-9875818)
[»] chr4 (21 HSPs)
chr4 (201-299)||(42504155-42504253)
chr4 (92-190)||(46844623-46844721)
chr4 (209-299)||(30220749-30220838)
chr4 (58-187)||(5314312-5314441)
chr4 (199-285)||(37762870-37762956)
chr4 (197-293)||(19663341-19663433)
chr4 (198-298)||(5288572-5288672)
chr4 (197-255)||(19482806-19482864)
chr4 (230-299)||(24060625-24060694)
chr4 (93-185)||(45682765-45682857)
chr4 (198-285)||(16528629-16528716)
chr4 (8-87)||(46844572-46844651)
chr4 (58-134)||(23811319-23811393)
chr4 (201-255)||(19663274-19663328)
chr4 (265-311)||(19482555-19482601)
chr4 (59-106)||(20394077-20394123)
chr4 (12-74)||(10011691-10011753)
chr4 (12-74)||(10018832-10018894)
chr4 (38-83)||(10011605-10011650)
chr4 (38-83)||(10018746-10018791)
chr4 (59-143)||(23811277-23811360)
[»] scaffold0011 (2 HSPs)
scaffold0011 (1-89)||(12538-12626)
scaffold0011 (131-189)||(12471-12529)
[»] scaffold0122 (1 HSPs)
scaffold0122 (233-298)||(18684-18749)
[»] scaffold0260 (1 HSPs)
scaffold0260 (33-77)||(20513-20557)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 34328743 - 34328560
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagtt 100  Q
    ||||||||| ||||||||  ||||||||| ||||||||||||||||||||||| || || || ||||||||||| ||| |||||||||| ||||||||||    
T  34328743 tctgctattttcccaacaagttttgttcgcgtccaactgaacttcccaaaatactc-tgtgttagttaactcacacaagtgttaattcc-agcgtgagtt 34328646  T
Q  101 aactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaac 186  Q
    ||||||  ||||  ||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  34328645 aactcacgcaagtgttaattccaacgtgagttaaattgcgcagcacatgttaagatgcacagattttaacacttgcgttacttaac 34328560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 46413700 - 46413807
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| ||| ||  ||||||||||||||| ||||||||||||||||    
T  46413700 agggaaatgatagatacattgacaaaatttattaaaaaaatttcaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgat 46413799  T
Q  297 ttcagcca 304  Q
    ||| ||||    
T  46413800 ttccgcca 46413807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 11561368 - 11561500
Alignment:
Q  38 tgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagtt 137  Q
    ||||||||||||||||| | ||||| ||||||||||||||| || ||||| | |  |||||||||||||   |||  |||||| || |||||||||||||    
T  11561368 tgaacttcccaaaatatccttgcgttagttaactcacgcaagtgctaatttcaat-gtgagttaactcaggaaagtgttaatttcaacgtgagttaagtt 11561466  T
Q  138 gcgcagcgcatgttaagatgcgcagattttaaca 171  Q
    ||||||||||||||||||||||||||||||||||    
T  11561467 gcgcagcgcatgttaagatgcgcagattttaaca 11561500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 9384746 - 9384608
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagtt 132  Q
    |||||||||||| ||||||||    ||||| |||||||||||| || |||||||||| |||||||||||||| |  ||||  |||||| ||| |||||||    
T  9384746 ccaactgaactttccaaaatacctctgcgtaagttaactcacgtaattgttaattcc-agcgtgagttaactaaggcaagtgttaatttcagtgtgagtt 9384648  T
Q  133 aagttgcgcagcgcatgttaagatgcgcagattttaacac 172  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  9384647 aagttgcgcagcacatgttaagatgcgcatattttaacac 9384608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 43466823 - 43466693
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    ||||| |||||||| |  || |||||||| | ||| |||||||||||| |||||  |||||| |||||||||||||||| | ||| |||| |||||||||    
T  43466823 gcgtgggttaactcccataagtgttaatttctagcctgagttaactcacacaagtattaatttcagcgtgagttaagttccacagtgcatattaagatgc 43466724  T
Q  159 gcagattttaacacttgcgttacttaactaa 189  Q
    ||||||||||||||||| |||||||||||||    
T  43466723 gcagattttaacacttgtgttacttaactaa 43466693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 21882759 - 21882828
Alignment:
Q  230 aagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  21882759 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttc 21882828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 20125740 - 20125653
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccatta 285  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||  ||| |||||||||||||||||    
T  20125740 gggaaatgatagatacaatgacaaattttatcaagaaaatttgaagacagtgtatttgctaatacctttctttaattacacaccatta 20125653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 23611708 - 23611808
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||| ||  || ||||||||||  |||||||||| |||||||    
T  23611708 gggaaatgatagatacaatgataaaatttatcaagaaaatttcaaaacagtgtatttgttaacacctttacttaattaca-tccattacctctcttgatt 23611806  T
Q  298 tc 299  Q
    ||    
T  23611807 tc 23611808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 1985128 - 1985055
Alignment:
Q  226 tatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||||||||||||| |||| |||||||||||||| ||  ||||||||||||| |||||||||| ||||||||||    
T  1985128 tatcaagaaaattttaagatagtgtatttgctaacacatttccttaattacataccattaccttccttgatttc 1985055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 22631609 - 22631529
Alignment:
Q  219 caaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||| |||||||||||||||||||||| ||||||| ||||| ||  |||||||||||||||| |||| |||| ||||||||    
T  22631609 caaactttatcaagaaaatttcaagacggtgtattagctaacacctttccttaattacacactattatctcctttgatttc 22631529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2377160 - 2377264
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagtt 100  Q
    |||||| |||||||| ||||||||| |||  || |||  ||||||||||||||  | |||||||||||||||||||||||||| || | |||| ||||||    
T  2377160 tctgctcttctcccatcacattttgctcgcttcaaaccaaacttcccaaaatacccctgcgtgagttaactcacgcaaatgtt-atactcagcatgagtt 2377258  T
Q  101 aactca 106  Q
    ||||||    
T  2377259 aactca 2377264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 19511560 - 19511459
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||| |||||| ||| |||||||| |||||||| |||||||||||||  ||| ||  |||||||||||| ||| |||| |||| ||||||    
T  19511560 gggaaatgatagatgcagtgataaattttatcaaaaaaatttcgagacagtgtatttattaacacctttccttaattactcactattatctccattgatt 19511461  T
Q  298 tc 299  Q
    ||    
T  19511460 tc 19511459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 24250417 - 24250513
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| || |||||||||||||| |||||||      ||||||||||| |||||| ||||||   || |||||||||| ||||||||||||||||||    
T  24250417 agggaaatgattgatacagtgacaaattttatca------tttcaagacagcgtatttactaatatcttttcttaattacaaaccattacctcccttgat 24250510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 47664519 - 47664593
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    |||| |||| ||| || |||||| |||| | ||||| |||||||||||||| ||| |||||||||||||||||||    
T  47664519 tgctcttcttccatcatattttgctcgttttcaactaaacttcccaaaatactcaagcgtgagttaactcacgca 47664593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 31589463 - 31589507
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    |||||||||||||||||||||  |||||||||||||| |||||||    
T  31589463 ccaactgaacttcccaaaatacccatgcgtgagttaagtcacgca 31589507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 46297711 - 46297663
Alignment:
Q  250 tatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    |||||||||| ||  ||||||||||||||||||||| ||||||||||||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactcccttgattt 46297663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 44601109 - 44601056
Alignment:
Q  239 tcaagacagtgtatttgctaatactattccttaattacacaccattacctccct 292  Q
    ||||||||||||||||||||| ||  || |||||||||||| ||||| ||||||    
T  44601109 tcaagacagtgtatttgctaacacattttcttaattacacatcattatctccct 44601056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 15127564 - 15127604
Alignment:
Q  214 agtgacaaaatttatcaagaaaatttcaagacagtgtattt 254  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  15127564 agtgacaagatgtatcaagaaaattttaagacagtgtattt 15127604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23284773 - 23284820
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcat 107  Q
    |||||||||||||||||||  |||||||| |||||||||||||| ||||    
T  23284773 gcgtgagttaactcacgcaggtgttaatt-ccagcgtgagttaaatcat 23284820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 3040208 - 3040331
Alignment:
Q  188 aatagtgatagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacc 287  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||    
T  3040208 aatagtgatagggaaataatagacacagtgacaaaatttatcaagaaaattttaagacagtgtatttgctaacacctttccttaattacacaccattacc 3040307  T
Q  288 tcccttgatttcagccagataaca 311  Q
    |||||||||||   ||||||||||    
T  3040308 tcccttgattttcaccagataaca 3040331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 2190468 - 2190282
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||||||||| ||||| |||||| ||| | ||||||| ||||  |||||||  | |||||||||||||||| | || |||||||| ||||||||||||||    
T  2190468 tgctattctcgcaacatattttgctcgcgcccaactgtacttttcaaaatacccttgcgtgagttaactcatgtaagtgttaatttccagcgtgagttaa 2190369  T
Q  103 ctcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    || | |||||  |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |||  ||||||||    
T  2190368 cttacacaagcgttaattccagcgtgagttaagttgtgcagcgcatgttaagatgcacagattttaaaacttgagttgtttaactaa 2190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 3039974 - 3040114
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    ||||||||| ||||||||||||||||| || |||||||||||   ||||||| ||||||  | ||||||||||||| |||||||||||| ||||||||||    
T  3039974 tgctattcttccaacacattttgttcgcgttcaactgaactttttaaaatatccatgcg--atttaactcacgcaagtgttaattcccatcgtgagttaa 3040071  T
Q  103 ctcatacaagatttaattccagcgtgagttaagttgcgcagcg 145  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||    
T  3040072 ctcacacaagatttaatttcagcgtgagttgagttgcgcagcg 3040114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 30735282 - 30735392
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttca 300  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||| || |||||||||||||||||||     
T  30735282 aaatgataggtacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacactttttcttaattacccagcattacctcccttgatttcc 30735381  T
Q  301 gccagataaca 311  Q
    |||| ||||||    
T  30735382 gccaaataaca 30735392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 25493966 - 25493868
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||| |||||||||||||||| || |||| |||||||||||||||||| |||||| ||||||  |||||||||||||||||||||||||| ||||||||    
T  25493966 aaatgatagatacagtgacaacatgtatccagaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacctcctttgatttc 25493868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 17066894 - 17066797
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||| |||||  ||| ||||||||| |||||||||||||||||||| ||||||||    
T  17066894 gcgtgagttaactcatgcaagtgttaattccagcgtgagttaagttgtgcagcagatgctaagatgcgtagattttaacacttgcgttaattaactaa 17066797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 20419594 - 20419480
Alignment:
Q  58 tgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaatt-ccagcgtgagttaagttgcgcagcgcatgttaagat 156  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||  ||||  |||||| ||| ||||||||||||||| || |||||||||||      
T  20419594 tgcgtgagttaactcacgcaagtgttaattcc-agcgtgagttaactcacgcaagtgttaatttccaacgtgagttaagttgcccaacgcatgttaagta 20419496  T
Q  157 gcgcagattttaacac 172  Q
    ||||||||||||||||    
T  20419495 gcgcagattttaacac 20419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 40519328 - 40519234
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctccct 292  Q
    ||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||| | || |||||||||||| ||||||||||||    
T  40519328 gggaaatgataaatacagtgacaaaaattatcaagaaaattttaagacagtgtatttgccaatattttttcttaattacacatcattacctccct 40519234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 30700828 - 30700928
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||| | ||||||||||||||||||| ||||||| ||||||||||||||||||| ||  || |||||||||||| ||||||||||||| |||    
T  30700828 gggaaatgataggtgcagtgacaaaatttatcaaaaaaattttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaatt 30700927  T
Q  298 t 298  Q
    |    
T  30700928 t 30700928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 20360063 - 20359960
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| ||||||||| | |||||||||| ||||||||| || |||||||||| ||  ||| ||||||||||||||||| |||| ||||||    
T  20360063 gggaaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacctttctttaattacacaccattatctcctttgatt 20359964  T
Q  298 tcag 301  Q
    ||||    
T  20359963 tcag 20359960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 30071921 - 30071820
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||  |  ||||| |||||||||||| ||||| || |||||    
T  30071921 gggaaatgatagatagagtgacaaaatttatgaagaaaattttaagacaatgtatttgctaactcctttcctcaattacacaccactaccttccatgatt 30071822  T
Q  298 tc 299  Q
    ||    
T  30071821 tc 30071820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 34280064 - 34280177
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||||||||| |||||||||| || |||| ||| ||||||||||| ||| |   ||||||||||||| ||||||| || |||| |||    
T  34280064 gggaaatgatagatacagtgacagaatttatcaataatattttaagtcagtgtatttgttaacatctttccttaattacataccattatcttccttaatt 34280163  T
Q  298 tcagccagataaca 311  Q
    || |||| ||||||    
T  34280164 tccgccaaataaca 34280177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 17066945 - 17066852
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    ||||| |||||||||| | |||  ||||||||||||| | ||||||  | |||||||||||||||| |||| |||||||| ||||||||||||||    
T  17066945 ttctcgcaacacatttcgctcgcatccaactgaactttctaaaatacccctgcgtgagttaactcatgcaagtgttaatt-ccagcgtgagttaa 17066852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 24402196 - 24402154
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaattt 239  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  24402196 agggaaatgatagatacaatgacaaaatttatcaagaaaattt 24402154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 25994911 - 25994958
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcat 107  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  25994911 gcgtgagttaactcacgcaagtgttaattctc-gcgtgagttaactcat 25994958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20419403 - 20419474
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactca 73  Q
    |||||||||||||||| |||||||| | | ||||||||||| |  | |||||||||||  |||||||||||||    
T  20419403 tctgctattctcccaatacattttgcttg-gtccaactgaaatatcgaaaatattcatatgtgagttaactca 20419474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 24582502 - 24582628
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||  ||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  24582502 gcgtgagttaactcactcaagtgttaattcccagcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgcatcgcatgttaagatgc 24582601  T
Q  159 gcagattttaacacttgcgttacttaa 185  Q
    |||||||||||||| ||| ||||||||    
T  24582602 gcagattttaacacatgcattacttaa 24582628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 27007311 - 27007206
Alignment:
Q  206 atagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttcagccag 305  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||| ||||||| |||||||||||||||||| ||||     
T  27007311 atagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacctcccttgatttccgccaa 27007212  T
Q  306 ataaca 311  Q
    ||||||    
T  27007211 ataaca 27007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 20143119 - 20143007
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||||||||||| |||||||| |||||||    
T  20143119 agggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagatagtgtattttctaacacctttccttaattacacatcattaccttccttgat 20143020  T
Q  297 ttcagccagataa 309  Q
    ||| |||| ||||    
T  20143019 ttccgccaaataa 20143007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 14131307 - 14131193
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||  ||||||||||||||||||||| ||| ||||||    
T  14131307 agggaaatgatagatacagtgacaaaatttatgaagaaaattttaagatagtgtatttgctaacacatttccttaattacacaccattatctcgcttgat 14131208  T
Q  297 ttcagccagataaca 311  Q
    ||| |||| ||||||    
T  14131207 ttccgccaaataaca 14131193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 19945685 - 19945783
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||   ||||||||||||||||||||||||||||| |||||    
T  19945685 aaatgatagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatttc 19945783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 13716676 - 13716768
Alignment:
Q  206 atagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  || ||||||||||||| ||||||||| |||||||    
T  13716676 atagatacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacactattacctcctttgattt 13716768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 31264908 - 31264827
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacaca 279  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||| |||||||||||||| ||| |||||||||||||||    
T  31264908 gggaaatgatagatacagtgacaaaatttatcaaacaaattttaagatagtgtatttgctaacacttttccttaattacaca 31264827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 31845544 - 31845463
Alignment:
Q  218 acaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||| ||||||||||||||||  |||||||||||||||||| |   | ||||||||||||||||||||||| |||||||||    
T  31845544 acaaattttatcaagaaaatttttagacagtgtatttgctaacatcttaccttaattacacaccattacctctcttgatttc 31845463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 3168046 - 3167945
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||| ||||||||||||||||||||||||||  | | ||| |||||||||| ||  ||| ||||||||||| |||||||| | |||||    
T  3168046 agggaaatgatagata-agtgacaaaatttatcaagaaaatttttaaatagtatatttgctaacacctttctttaattacacatcattaccttctttgat 3167948  T
Q  297 ttc 299  Q
    |||    
T  3167947 ttc 3167945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 38320153 - 38320259
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaa-------tttcaagacagtgtatttgctaatactattccttaattacacaccattacctccct 292  Q
    ||||| |||||||||||| ||||||||||||||||||       ||| ||||||||||||||| ||| ||  ||||||| ||||||| |||||||||| |    
T  38320153 gaaatgatagatacagtggcaaaatttatcaagaaaaaagaaaattttaagacagtgtatttgataacacatttccttatttacacatcattacctcctt 38320252  T
Q  293 tgatttc 299  Q
    |||||||    
T  38320253 tgatttc 38320259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 32975977 - 32976064
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccatt 284  Q
    |||||||| |||||||||  ||||| || ||||||||||||||||| ||||||||||| |||| ||  || |||||||||| ||||||    
T  32975977 agggaaatgatagatacatcgacaatatgtatcaagaaaatttcaaaacagtgtatttactaacaccttttcttaattacataccatt 32976064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 37714538 - 37714472
Alignment:
Q  233 aaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||||| ||| ||||||||||||||| ||  ||||||||||||||||||||| |||| ||||||||    
T  37714538 aaaattttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttgatttc 37714472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 27407571 - 27407471
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||||||||||| |  |  || ||||||| |||| | |||||||||||||||  ||||||||||||||| ||||| || ||||||||    
T  27407571 gggaaatgatagatacagtgacaaactcaag-aacaaaattttaagatactgtatttgctaatacatttccttaattacacagcattatcttccttgatt 27407473  T
Q  298 tc 299  Q
    ||    
T  27407472 tc 27407471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 35457518 - 35457449
Alignment:
Q  230 aagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||||||||| |||| ||| |||||| ||| ||  |||||||||||||||||||||||||| ||||||||    
T  35457518 aagaaaattttaagatagtatatttgttaacacatttccttaattacacaccattacctcctttgatttc 35457449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 4434438 - 4434358
Alignment:
Q  210 atacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcc 290  Q
    ||||||||||||| | ||| ||||||||||||| ||| | ||||||| || ||  || |||||||||||||||||||||||    
T  4434438 atacagtgacaaactgtattaagaaaatttcaaaacaatatatttgccaacacatttacttaattacacaccattacctcc 4434358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24582393 - 24582465
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactca 73  Q
    |||||| |||||||||||||||||| | | || ||||| ||||| ||||||||||  ||||||||||||||||    
T  24582393 tctgctcttctcccaacacattttgcttgcgttcaactaaactttccaaaatattactgcgtgagttaactca 24582465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 24582470 - 24582545
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaatt-ccagcgtgagttaa 134  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||  ||||  |||||| ||||||||||||||    
T  24582470 gcgtgacttaactcacgcaagtgttaatt-ccagcgtgagttaactcactcaagtgttaattcccagcgtgagttaa 24582545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 37899471 - 37899549
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattac 276  Q
    ||||||| ||||||||||||||||||| |||||||||| |||  ||||| ||||||| |||| ||  |||| |||||||    
T  37899471 gggaaatgatagatacagtgacaaaatgtatcaagaaattttttagacaatgtatttactaacacatttccataattac 37899549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 34233648 - 34233611
Alignment:
Q  40 aacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34233648 aacttcccaaaatactcatgcgtgagttaactcacgca 34233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 5881435 - 5881490
Alignment:
Q  244 acagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||| |||||||||||||  ||||||||||||||| |||||| | ||||||||||    
T  5881435 acagtatatttgctaatacctttccttaattacacatcattacattccttgatttc 5881490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 25770449 - 25770376
Alignment:
Q  12 cccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaa 85  Q
    |||||||||||||| || | | |||||||| |||  |||||  |||||||||||||||||||||| | ||||||    
T  25770449 cccaacacattttgctcattttcaactgaaattctaaaaatgctcatgcgtgagttaactcacgctagtgttaa 25770376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 44798655 - 44798841
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||| |||||||||||||||||| ||| | | |||||||||||| ||||||    |  |||||||||||||||||  |||||||||||| ||||||||||    
T  44798655 tgctcttctcccaacacattttgctcgcgcctaactgaacttcctaaaataccgctaagtgagttaactcacgcacgtgttaattcccaacgtgagttaa 44798754  T
Q  103 ctcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    ||||  ||||  ||| ||||||||||| |||| ||| |||||||||||||||||||  |||||||||||| ||| ||||||||||||    
T  44798755 ctcacgcaagtgttagttccagcgtgaattaaattgtgcagcgcatgttaagatgcatagattttaacacatgcattacttaactaa 44798841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 39926443 - 39926572
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    |||||| |||| |||||||| ||||||||  || ||||||||||||||   |||  |||||||||||||||||||||||||||||||||||||||||| |    
T  39926443 gcgtgaattaattcacgcaagtgttaattttcaacgtgagttaactcacgaaagtgttaattccagcgtgagttaagttgcgcagcgcatgttaagat-c 39926541  T
Q  159 gcagattttaacacttgcgttacttaactaa 189  Q
    |||||||||||||  ||||||||||||||||    
T  39926542 gcagattttaacatctgcgttacttaactaa 39926572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 1632958 - 1632857
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||  ||| |||||||||||||||||||||| ||||||    
T  1632958 gggaaatgatagatacagtgacaaaatttatcaaaaaaattccaagacagtgtatttgttaacacgtttctttaattacacaccattacctcctttgatt 1632859  T
Q  298 tc 299  Q
    ||    
T  1632858 tc 1632857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 26443083 - 26442986
Alignment:
Q  214 agtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttcagccagataaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||  ||  ||||||||||||||||||||||||||||||| |||| ||||||    
T  26443083 agtgacaaaatttatcaagaaaatttcaagacagtgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataaca 26442986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 18271924 - 18272034
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttca 300  Q
    |||| ||||||| |||||||||||||||||||||||||| |||| || ||||||||||| ||  ||| |||||||||||||||||||||| ||||||||     
T  18271924 aaatgatagatatagtgacaaaatttatcaagaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacctccattgatttcc 18272023  T
Q  301 gccagataaca 311  Q
    |||| ||||||    
T  18272024 gccaaataaca 18272034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 31192210 - 31192109
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||||||| ||| | |||||||||||||| ||||||| |||||||||||||   |||||||||||||||| |||| ||| ||| ||    
T  31192210 agggaaatgatagatacagtgataaactgtatcaagaaaattttaagacagggtatttgctaatatctttccttaattacacactattatctctcttaat 31192111  T
Q  297 tt 298  Q
    ||    
T  31192110 tt 31192109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 45852891 - 45852991
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||| ||||||||| | |||||||||||||| ||||| ||||||||||||| ||  || |||||||||| | ||||| ||||||||||    
T  45852891 agggaaatgatagataaagtgacaaactgtatcaagaaaattttaagaccgtgtatttgctaacaccttttcttaattacatatcattatctcccttgat 45852990  T
Q  297 t 297  Q
    |    
T  45852991 t 45852991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 8004285 - 8004359
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcat 107  Q
    ||||||||||||| ||||||| || |||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  8004285 ccaactgaacttctcaaaatactcttgcgtgagttaactcacgtaagtgttaatttccagcgcgagttaactcat 8004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 34905997 - 34905896
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||||||   ||||| | |||| ||||||||| ||||||||||||||||||| ||  ||||||||||| ||| |||||||||| |||||    
T  34905997 agggaaattatagatacaacaacaaactgtatcgagaaaattttaagacagtgtatttgctaacacctttccttaattatacatcattacctcctttgat 34905898  T
Q  297 tt 298  Q
    ||    
T  34905897 tt 34905896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 1713933 - 1714049
Alignment:
Q  195 atagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttg 294  Q
    |||||||||| ||| ||||||||| ||||||||| | |||||||||||||||||||||||  ||| |   || |||||||| |||| |||| |||||||     
T  1713933 atagggaaatgataaatacagtgataaaatttattaggaaaatttcaagacagtgtatttattaacatattttcttaattatacacaattatctccctta 1714032  T
Q  295 atttcagccagataaca 311  Q
    ||||| |||| ||||||    
T  1714033 atttccgccaaataaca 1714049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 2672042 - 2671961
Alignment:
Q  209 gatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcc 290  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||| ||| |   ||||||||||||||| ||||| ||||    
T  2672042 gataaagtgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacatctttccttaattacacatcattatctcc 2671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 10593417 - 10593506
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccatta 285  Q
    ||||||||  ||||||||||||| |||||||||||||||||||| |||| |||||||||| ||| ||  || | |||||| |||||||||    
T  10593417 tagggaaaagatagatacagtgataaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcctaattatacaccatta 10593506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 22754811 - 22754718
Alignment:
Q  89 ccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaacta 188  Q
    |||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||||||||     |||||||||||||||||||| | |||||||||||    
T  22754811 ccagtgtgagttaactcacgcaagtgttaattccagcgtgagttaagttgc--agcgcatg-----atgcgcagattttaacacttacattacttaacta 22754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 39926355 - 39926439
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaatt 87  Q
    |||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||   || ||||||||| |||||||| ||||||||    
T  39926355 tgctcttctcccaacacattttgctcgcgtcaaactgaacttctcaaaatatctctgtgtgagttaattcacgcaagtgttaatt 39926439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 22754873 - 22754818
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtg 63  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||    
T  22754873 ttctcccaacacattttgctcgcgttcaactgaacttcccaaaatattcttgcgtg 22754818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15043036 - 15042961
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgc 76  Q
    |||||| |||||||| |||||||||||||| ||||||  ||||||| ||||||  | |||||||||||||| ||||    
T  15043036 tctgctcttctcccatcacattttgttcgtttccaaccaaacttcctaaaatacccctgcgtgagttaacttacgc 15042961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 8004364 - 8004406
Alignment:
Q  147 atgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    |||| |||||| |||||||||||||||| ||||||||||||||    
T  8004364 atgtaaagatgtgcagattttaacacttacgttacttaactaa 8004406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 45004435 - 45004483
Alignment:
Q  53 attcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||| ||||||||||||||||||||| |||||||| ||| ||||||||||    
T  45004435 attcctgcgtgagttaactcacgcaagtgttaatt-ccaacgtgagttaa 45004483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 44798894 - 44798862
Alignment:
Q  9 tctcccaacacattttgttcgtgtccaactgaa 41  Q
    ||||||||||||||||||||| |||||||||||    
T  44798894 tctcccaacacattttgttcgcgtccaactgaa 44798862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 45004441 - 45004489
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcg 140  Q
    |||||||||||||||  ||||  ||||||||| ||||||||||||||||    
T  45004441 gcgtgagttaactcacgcaagtgttaattccaacgtgagttaagttgcg 45004489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 27063 - 27180
Alignment:
Q  194 gatagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctccctt 293  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||| | |||| |||||||    
T  27063 gatagggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaattacactctattatctccctt 27162  T
Q  294 gatttcagccagataaca 311  Q
    |||||| |||| ||||||    
T  27163 gatttccgccaaataaca 27180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 31271931 - 31271803
Alignment:
Q  61 gtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgc 160  Q
    ||||||||| |||| ||| || |||||  |||| ||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||||| |    
T  31271931 gtgagttaagtcacacaagtgctaattttcagcatgagttaactcatgcaagtcttaattccagcgtgagttaagttgcgcagtgcatgttaagatgcac 31271832  T
Q  161 agattttaacacttgcgttacttaactaa 189  Q
    ||||||||||| |||||||||||||||||    
T  31271831 agattttaacatttgcgttacttaactaa 31271803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 25124518 - 25124407
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||||||| ||||| ||| |||||||||    
T  25124518 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcattatctctcttgatttc 25124419  T
Q  300 agccagataaca 311  Q
     |||| ||||||    
T  25124418 cgccaaataaca 25124407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 5718407 - 5718506
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||| ||||||||| ||||||| | |||||||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||| ||||||||||    
T  5718407 gaaatgatagatacaatgacaaactatatcaagaaaattttaagacagtgtatttgctaacacatttccttaattacacaccattaccttccttgatttc 5718506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 38585046 - 38585152
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||| || |||||||||||||||||||||||||||  || |||||||||||| ||| ||| |||||||||||| ||||||||| ||||||    
T  38585046 gggaaatgatagatccaatgacaaaatttatcaagaaaatttcaaagcaatgtatttgctaacacttttctttaattacacacaattacctcctttgatt 38585145  T
Q  298 tcagcca 304  Q
    || ||||    
T  38585146 tccgcca 38585152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 29414535 - 29414432
Alignment:
Q  195 atagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttg 294  Q
    |||||||||| ||||||||  ||| ||||| ||||||||||||||||| |||||| ||||| ||| ||  ||||||||||| |||||||||||| |||||    
T  29414535 atagggaaatgatagataccttgataaaatatatcaagaaaatttcaaaacagtgcatttgttaacacctttccttaattaaacaccattaccttccttg 29414436  T
Q  295 attt 298  Q
    ||||    
T  29414435 attt 29414432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 33543494 - 33543385
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    |||||| ||||||||  |||||||||||||||||||||| |||||||||| |||||| ||| ||  ||  ||||||||||| ||||| ||||||||||||    
T  33543494 ggaaatgatagatac--tgacaaaatttatcaagaaaatatcaagacagtatatttgttaacacctttttttaattacaca-cattatctcccttgattt 33543398  T
Q  299 cagccagataaca 311  Q
    |||||| ||||||    
T  33543397 cagccaaataaca 33543385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 5686276 - 5686349
Alignment:
Q  226 tatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||||||||||||||||| || ||||||||||| ||  ||| ||||||||| |  ||||||||||||||||||    
T  5686276 tatcaagaaaatttcaagatagcgtatttgctaacacatttcattaattacatattattacctcccttgatttc 5686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 27459947 - 27459879
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgc 76  Q
    |||||||||||||||||| |||  |||| ||||| |||||||||||  ||||  |||||||||||||||    
T  27459947 ttctcccaacacattttgctcgcttccagctgaatttcccaaaatacccatgtttgagttaactcacgc 27459879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 35393823 - 35393790
Alignment:
Q  265 ttccttaattacacaccattacctcccttgattt 298  Q
    |||||||||||||| |||||||||||||||||||    
T  35393823 ttccttaattacaccccattacctcccttgattt 35393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 36933377 - 36933414
Alignment:
Q  151 taagatgcgcagattttaacacttgcgttacttaacta 188  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  36933377 taagttgcgcagattttaacacttgcgttagttaacta 36933414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 29657516 - 29657414
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttga 295  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||||||||| | |||||||||| ||||    
T  29657516 tagggaaatgatagatacagtgacaaattttatcaagaaaatttcaagacagtgtatttgctaacacctttccttaattacatatcattacctcctttga 29657417  T
Q  296 ttt 298  Q
    |||    
T  29657416 ttt 29657414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 35413179 - 35413075
Alignment:
Q  195 atagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttg 294  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||| ||| ||  |||||||||||||||| |||||||||||||    
T  35413179 atagggaaatgatagatataatgacaaaatttatcaagaaaatttcaagagagtgtatttgttaacacctttccttaattacacactattacctcccttg 35413080  T
Q  295 atttc 299  Q
    |||||    
T  35413079 atttc 35413075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 19062866 - 19063002
Alignment:
Q  34 caactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagtta 133  Q
    |||| |||||| | ||||||| | ||| |||||||| |||||||| |||||||| | |||||||||||||||| |||||  ||||||||||| |||||||    
T  19062866 caacggaactttctaaaatatccctgcatgagttaattcacgcaagtgttaatttc-agcgtgagttaactcagacaagtgttaattccagcatgagtta 19062964  T
Q  134 agttgcgcagcgcatgttaagatgcgcagattttaaca 171  Q
    | ||  ||||||||||||||||||||||||||||||||    
T  19062965 aattttgcagcgcatgttaagatgcgcagattttaaca 19063002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 10061723 - 10061641
Alignment:
Q  217 gacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||| |||||||||||||||||||    
T  10061723 gacaaaatttatcaagaaaatttcaagacagtttatttgctaacacatttccttaattacacatcattacctcccttgatttc 10061641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 32306513 - 32306405
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagtt 132  Q
    |||||||||||| ||||||||| | |||||||||||||||| |||| ||| |||||| ||||||||||||||||  ||||  |||||| |||||||||||    
T  32306513 ccaactgaactttccaaaatatccctgcgtgagttaactcatgcaagtgtcaattcc-agcgtgagttaactcacgcaagtgttaatttcagcgtgagtt 32306415  T
Q  133 aagttgcgca 142  Q
    ||||||||||    
T  32306414 aagttgcgca 32306405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 35149620 - 35149722
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttga 295  Q
    |||| |||| |||| ||||||||||||||||||||| |||||||||||| | |||||||||||| ||  ||||||||||| ||| ||||| |||||||||    
T  35149620 taggaaaatgataggtacagtgacaaaatttatcaaaaaaatttcaagagaatgtatttgctaacacctttccttaattatacatcattatctcccttga 35149719  T
Q  296 ttt 298  Q
    |||    
T  35149720 ttt 35149722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 26470082 - 26469994
Alignment:
Q  210 atacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    ||||||||| |||||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||||||||| || | |||||||    
T  26470082 atacagtgataaaatttatcaagaaaattttaaaacagtgtatttgctaacacctttccttaattacacaccattatcttctttgattt 26469994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 43537134 - 43537204
Alignment:
Q  229 caagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||||||||||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||||||||||    
T  43537134 caagaaaatttcaagacagtgtatttgttaacacatttctttaattacacaccattacctcccttgatttc 43537204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 8360166 - 8360229
Alignment:
Q  128 gagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaata 191  Q
    |||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  8360166 gagttaagttgcgcacagcatgttaagatgcgctgattttaacacatgcgttacttaactaata 8360229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 21258292 - 21258382
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccag 124  Q
    |||||||||||||||||||||    ||||||||||||||||||||| |||||||| |||||||||||||||| | |||||  ||||||||||    
T  21258292 ccaactgaacttcccaaaatacctctgcgtgagttaactcacgcaagtgttaatt-ccagcgtgagttaactaagacaagtgttaattccag 21258382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 9113421 - 9113514
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgta-tttgctaatactattccttaattacacaccattacctccctt 293  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||| |||||| |||||||| ||  ||||||||||||| | |||||||||||||    
T  9113421 aaatgatagatacagtgataaaatatatcaagaaaattttaagagagtgtattttgctaaaacctttccttaattacagatcattacctccctt 9113514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 13085032 - 13085076
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttc 240  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  13085032 tagggaaataatagatacaatgacaaaatgtatcaagaaaatttc 13085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 29694020 - 29694095
Alignment:
Q  115 ttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaata 191  Q
    ||||||||||  |||||||||||| ||||| |||||||||| ||||| ||||| |||| || |||||||||||||||    
T  29694020 ttaattccagtatgagttaagttgtgcagcacatgttaaga-gcgcacattttgacacctgtgttacttaactaata 29694095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 23906605 - 23906664
Alignment:
Q  239 tcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    |||||||| |||||||||||| ||  ||| ||||||||||||||||||||| ||||||||    
T  23906605 tcaagacaatgtatttgctaacacctttctttaattacacaccattacctctcttgattt 23906664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 49402047 - 49401989
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaa 259  Q
    |||| |||||||||||||||||||||||||| || |||||||  || ||||||||||||    
T  49402047 aaatgatagatacagtgacaaaatttatcaaaaagatttcaaaccaatgtatttgctaa 49401989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 48852794 - 48852693
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||| ||||||||||||||||||| ||| ||| || ||| |||||||| ||| | | || |||||||| ||| ||||| || | |||||    
T  48852794 agggaaatgatagatccagtgacaaaatttatcaaaaaatttttaaaacaatgtatttgttaacattttttcttaattatacatcattatcttctttgat 48852695  T
Q  297 tt 298  Q
    ||    
T  48852694 tt 48852693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 21540187 - 21540111
Alignment:
Q  235 aatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttcagccagataaca 311  Q
    ||||||||||||||||||||| ||| ||  ||| ||||||||||  ||||| ||||||| ||||| |||| ||||||    
T  21540187 aatttcaagacagtgtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataaca 21540111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 34475856 - 34475804
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgt 250  Q
    ||||||| || |||||||||||||||| ||| |||||||||| ||||||||||    
T  34475856 gggaaatgatggatacagtgacaaaatgtattaagaaaattttaagacagtgt 34475804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 36816970 - 36817014
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  36816970 ccaactgaacttcccaaaatactcccgcgtgagttaactcacgca 36817014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 11470104 - 11470061
Alignment:
Q  268 cttaattacacaccattacctcccttgatttcagccagataaca 311  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||    
T  11470104 cttaattacacatcattacctcccttgatttccgccaaataaca 11470061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 44958464 - 44958524
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaa 259  Q
    |||||||| |||||||  |||||||||| ||| |||||||||| |||| ||||||||||||||    
T  44958464 agggaaatgatagata--gtgacaaaatgtattaagaaaatttgaagagagtgtatttgctaa 44958524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 4684599 - 4684518
Alignment:
Q  217 gacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    ||||||||  |||||||||||||  | |||   |||||||||| ||  ||||||||||||||||||||| |||| |||||||    
T  4684599 gacaaaatgcatcaagaaaattttcaaacaacatatttgctaacacctttccttaattacacaccattatctcctttgattt 4684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8360104 - 8360157
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatat 54  Q
    |||||| |||||||||||||||||| ||| |  ||||||||||||| |||||||    
T  8360104 tctgctcttctcccaacacattttgctcgcgctcaactgaacttcctaaaatat 8360157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 37919799 - 37919766
Alignment:
Q  56 catgcgtgagttaactcacgcaaatgttaattcc 89  Q
    |||||||||||||||||||||| |||||||||||    
T  37919799 catgcgtgagttaactcacgcagatgttaattcc 37919766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 32871711 - 32871812
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttc-aagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| | | |||||||||||||||| ||||||||||||||||    
T  32871711 ggaaatgatagatacaatgacaaaatttatcaagaaaatttctaagacagtgtatttactaacatttttccttaattacacactattacctcccttgatt 32871810  T
Q  298 tc 299  Q
    ||    
T  32871811 tc 32871812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 34713652 - 34713538
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||  || ||||| ||||||||||||| |||||||||    
T  34713652 agggaaatgatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattacatcccttgat 34713553  T
Q  297 ttcagccagataaca 311  Q
    ||  |||| ||||||    
T  34713552 tttcgccaaataaca 34713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 3855694 - 3855794
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||  ||||| |||||| |||    
T  3855694 gggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgta-ttgctaacacctttccttaattacacattattacatcccttaatt 3855792  T
Q  298 tc 299  Q
    ||    
T  3855793 tc 3855794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 6784660 - 6784761
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| |||||||||||  |||||||||||||| ||| |||||||||||||| ||  || |||||||||||||||||| |||||||||||    
T  6784660 gggaaatgatagatatagtgacaaaatgcatcaagaaaatttcgagatagtgtatttgctaacaccttttcttaattacacaccattatctcccttgatt 6784759  T
Q  298 tc 299  Q
    ||    
T  6784760 tc 6784761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 24624901 - 24624991
Alignment:
Q  99 ttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    |||||||| |||||  ||||||||| | ||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  24624901 ttaactcacacaagtgttaattccaacatgatttaagtttcgcagcgcatattaagatgcgcagattttaacacttgtgttacttaactaa 24624991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 2130472 - 2130563
Alignment:
Q  220 aaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttcagccagataaca 311  Q
    ||||||||||||||||||||||| || ||||||||||||| ||  |||||||||||||||| || |||||| |||||||| |||| ||||||    
T  2130472 aaaatttatcaagaaaatttcaaaacggtgtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataaca 2130563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 28867317 - 28867234
Alignment:
Q  216 tgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||||| | ||||||||||||||||||||| |||||||||||| ||  ||||||||||||| || ||||||||| ||||||||    
T  28867317 tgacaaattgtatcaagaaaatttcaagacaatgtatttgctaaaacatttccttaattacatactattacctcctttgatttc 28867234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 9863526 - 9863629
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    |||||| ||||||||||||| |||||||||| || ||||||||||| |  ||||  |||||||||| ||||| ||||||||||| | |||||||| ||||    
T  9863526 gcgtgatttaactcacgcaagtgttaattcc-agtgtgagttaacttaggcaagtgttaattccagtgtgaggtaagttgcgcaacacatgttaaaatgc 9863624  T
Q  159 gcaga 163  Q
    |||||    
T  9863625 gcaga 9863629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 9863432 - 9863502
Alignment:
Q  35 aactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactca 106  Q
    ||||||||||  |||||||  | ||||||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  9863432 aactgaacttttcaaaatacccctgcgtgagttaactcacacaagtgttaatt-ccagcgtcagttaactca 9863502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 9875844 - 9875776
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||| ||||||| ||||||||    |||||||||||||||| |||| |||||||| ||||||||||||||    
T  9875844 ccaattgaactttccaaaatacctctgcgtgagttaactcaggcaagtgttaatt-ccagcgtgagttaa 9875776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 9875818 - 9875774
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagt 136  Q
    |||||||||||||||  ||||  ||||||||||||||||||||||    
T  9875818 gcgtgagttaactcaggcaagtgttaattccagcgtgagttaagt 9875774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 42504155 - 42504253
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||| ||  ||||||||||||||| |||||||||||||||||||    
T  42504155 aaatgatagatacaatgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttc 42504253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 46844623 - 46844721
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaat 190  Q
    |||||||||||||||  ||||  |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  46844623 gcgtgagttaactcacgcaagtgttaatttcaacgtgagttaagttgcgcagcgcatgttaagatgtgcagattttaacatctgcgttacttaactaat 46844721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 30220838 - 30220749
Alignment:
Q  209 gatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||    
T  30220838 gatacggtgacaaaatgtatcaagaaaattttaagacagtgtatttgctaacacttttccttaattacacaccaata-ctcccttgatttc 30220749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 5314441 - 5314312
Alignment:
Q  58 tgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaatt-ccagcgtgagttaagttgcgcagcgcatgttaagat 156  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||||||  ||||  |||||| ||||||| |||||||||||| ||| |||||||||      
T  5314441 tgcgtgagttaactcacgcaagtgttaattcc-agcgtgaattaactcacgcaagtgttaatttccagcgtaagttaagttgcgtagctcatgttaagta 5314343  T
Q  157 gcgcagattttaacacttgcgttacttaact 187  Q
     ||||||||||||||| ||||| | ||||||    
T  5314342 acgcagattttaacacctgcgtgagttaact 5314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 37762956 - 37762870
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccatta 285  Q
    |||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||| ||| ||| ||||||||||||||| |||||    
T  37762956 ggaaatgatagatagagtgacaaaatttatcaaaaaaatttcaagacaatgtatttgttaacacttttccttaattacacatcatta 37762870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 19663433 - 19663341
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctccctt 293  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||    |||  || |||||||||||| |||||||||||||    
T  19663433 agggaaatgatagatacagtgacaaaatttatcaagaaaattttaagagagtgtatttg----taccttttcttaattacacatcattacctccctt 19663341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 5288672 - 5288572
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| ||||||||| | |||||||||| ||||||||| || |||||||||| ||  ||  ||||||||||||||||| |||||||||||    
T  5288672 gggaaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacatttttttaattacacaccattatctcccttgatt 5288573  T
Q  298 t 298  Q
    |    
T  5288572 t 5288572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 19482864 - 19482806
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttg 255  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19482864 agggaaaatatagatacagtgacaaaatttatcaagaaaatttcaagacagtttatttg 19482806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 24060694 - 24060625
Alignment:
Q  230 aagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgatttc 299  Q
    |||||||||| || |||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||    
T  24060694 aagaaaattttaaaacagtgtatttgctaacacatttccttaattacacaccattatctcccttgatttc 24060625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 45682857 - 45682765
Alignment:
Q  93 cgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaa 185  Q
    ||||||||||||||  ||||  ||||||||| ||||||||||||||| || |  ||||||||||| |||||||||||||||||| ||| ||||    
T  45682857 cgtgagttaactcaggcaagtgttaattccaacgtgagttaagttgcacaacatatgttaagatgggcagattttaacacttgcattagttaa 45682765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 16528716 - 16528629
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaatactattccttaattacacaccatta 285  Q
    ||||||| |||||||||| ||||| || |||||||||||||| |||| |||||||||| ||| ||  ||| |||||||||||||||||    
T  16528716 gggaaatgatagatacagcgacaacatgtatcaagaaaattttaagatagtgtatttgttaacacatttctttaattacacaccatta 16528629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 46844572 - 46844651
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaatt 87  Q
    |||||| | ||||||||||||| | | |||||||||||  ||||||| ||||||||||||||||||||||| ||||||||    
T  46844572 ttctcctagcacattttgttcgcggcaaactgaacttcttaaaatatccatgcgtgagttaactcacgcaagtgttaatt 46844651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 23811393 - 23811319
Alignment:
Q  58 tgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaa 134  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||  |||| ||||||| |||||||||||||    
T  23811393 tgcgtgagataactcacgcaagtgttaatt-ccagcgtgagttaactcacgcaag-tttaattacagcgtgagttaa 23811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 19663274 - 19663328
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttg 255  Q
    |||| ||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  19663274 aaatgatagatacagtgacaaaatttataaaaaaaatgtcaagacagtgtatttg 19663328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 19482601 - 19482555
Alignment:
Q  265 ttccttaattacacaccattacctcccttgatttcagccagataaca 311  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||||    
T  19482601 ttccttaattacacaccattacttcccttgatttccgccaaataaca 19482555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 20394077 - 20394123
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactca 106  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||    
T  20394077 gcgtgagttaactcacgcagatgttaatt-ccggcgtgagttaactca 20394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 10011753 - 10011691
Alignment:
Q  12 cccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcac 74  Q
    |||||||||||||| ||| ||||||||||| | || |||||| || ||| |||||||||||||    
T  10011753 cccaacacattttgctcgcgtccaactgaaataccgaaaatactcctgcatgagttaactcac 10011691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 10018894 - 10018832
Alignment:
Q  12 cccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcac 74  Q
    |||||||||||||| ||| ||||||||||| | || |||||| || ||| |||||||||||||    
T  10018894 cccaacacattttgctcgcgtccaactgaaataccgaaaatactcctgcatgagttaactcac 10018832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 10011605 - 10011650
Alignment:
Q  38 tgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgtt 83  Q
    |||||||||||||||| || ||| ||||||||||||||||| ||||    
T  10011605 tgaacttcccaaaatactcctgcatgagttaactcacgcaagtgtt 10011650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 10018746 - 10018791
Alignment:
Q  38 tgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgtt 83  Q
    |||||||||||||||| || ||| ||||||||||||||||| ||||    
T  10018746 tgaacttcccaaaatactcctgcatgagttaactcacgcaagtgtt 10018791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 23811360 - 23811277
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaa-ttccagcgtgagttaagttgcgcag 143  Q
    |||||||||||||||||||| | |||||| | |||||||||||||||| |||||  |||| ||||   ||||||||||||||||||    
T  23811360 gcgtgagttaactcacgcaagt-ttaattac-agcgtgagttaactcacacaagtgttaatttccgatgtgagttaagttgcgcag 23811277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12626 - 12538
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcc 89  Q
    |||||| ||| || |||||||||| |||| | |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  12626 tctgctcttccccgaacacattttattcgcgcccaactgaacttcccaaaatatccttgcgtgagttaactcacgcaaatgctaattcc 12538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 12529 - 12471
Alignment:
Q  131 ttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    ||||||||| || ||||||||||||| || |||||||||||| ||  ||||||||||||    
T  12529 ttaagttgcacaacgcatgttaagattcgtagattttaacacatgtattacttaactaa 12471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 18749 - 18684
Alignment:
Q  233 aaaatttcaagacagtgtatttgctaatactattccttaattacacaccattacctcccttgattt 298  Q
    |||| ||||| |||||||||||||||| ||  |||||||||||| |||||||| ||||||| ||||    
T  18749 aaaaattcaaaacagtgtatttgctaacacatttccttaattactcaccattatctcccttaattt 18684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 20557 - 20513
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    ||||||||||||||||||||| || || |||||||||||||||||    
T  20557 ccaactgaacttcccaaaatactcctgtgtgagttaactcacgca 20513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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