View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4854_low_26 (Length: 239)
Name: NF4854_low_26
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_26 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 42341844 - 42342064
Alignment:
| Q |
18 |
gaaagggtggtggagagaaggcagaggaggatgatcaagaatagagagtcagcagcaagatctagagccagaaaacaggttcctgaaattttaaccaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42341844 |
gaaagggtggtggagagaaggcagaggaggatgatcaagaatagagagtcagcagcaagatctagagccagaaaacaggttcctgaaattttaaccaatc |
42341943 |
T |
|
| Q |
118 |
atattatacttaaatctaaaattatgtatccacaaatgtatgaattatttgaaattcttatgtatatatgatcaagataatacaacattatatttatatg |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42341944 |
atattatactt-aatctaaaattatgtatccacaaatgtatgaattatttgaaattcttatgtatatatgatcaagataatacagcattatatttatatg |
42342042 |
T |
|
| Q |
218 |
ctattgaaggtaacattagttt |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42342043 |
ctattgaaggtaacattagttt |
42342064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University