View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854_low_27 (Length: 239)

Name: NF4854_low_27

Description: NF4854

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4854_low_27

[»] chr7 (4 HSPs)

[»] chr4 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 4)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 144; E-Value: 8e-76

Query Start/End: Original strand, 19 - 239

Target Start/End: Original strand, 8354917 - 8355143

Alignment:

Q	19	atagcttagttaagagaatgtgtagtaggcaataataagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaaatagatagatacttttcc	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8354917	atagcttagttaagagaatgtgtagtaagcaataataagtaaaaaccagccaaaactagcaaaactattgagtagccaagaaatagatagatacttttcc	8355016	T

Q	119	cttgtaattgtgaattcctcggaattcaagaagtgtatgtaaac------tccttgtcatggtagagttcggaagaaaggtggtgattgaggaatttcac	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8355017	cttgtaattgtgaattcctcggaaattgagaagtggatgtaaactctccttccttgtcatggaagagttcggaagaaaggtggcgattgaggaatttcac	8355116	T

Q	213	accattcccaagtgtcttgtttagagt	239	Q
		\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|
T	8355117	atcattcccaattgtcttcttgagagt	8355143	T

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Target: chr7; HSP #2

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 51 - 153

Target Start/End: Original strand, 8410644 - 8410742

Alignment:

Q	51	taataagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaattcaagaa	150	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|
T	8410644	taataagtaaaaaccagccaaaactagcaaagttatagagtagccaagaa----atagatacctttctcttgtaattgtgaattcctcggaactcgagaa	8410739	T

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Target: chr7; HSP #3

Raw Score: 51; E-Value: 2e-20

Query Start/End: Original strand, 19 - 102

Target Start/End: Original strand, 8348881 - 8348966

Alignment:

Q	19	atagcttagttaagagaatgtg--tagtaggcaataataagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaaat	102	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	8348881	atagcttaattaagagaatgtgtgtagtaggcaataataagtaaaaaccatccaaaactagcaaagctgtagactagccaagaaat	8348966	T

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Target: chr7; HSP #4

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 186 - 239

Target Start/End: Original strand, 8410745 - 8410798

Alignment:

Q	186	agaaaggtggtgattgaggaatttcacaccattcccaagtgtcttgtttagagt	239	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|
T	8410745	agaaaggtggagattgaggaatttcacaccattcccaattgtctggttgagagt	8410798	T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 48; E-Value: 1e-18

Query Start/End: Original strand, 95 - 239

Target Start/End: Complemental strand, 51650442 - 51650296

Alignment:

Q	95	caagaaatagatagatacttttcccttgtaattgtgaattcctcggaattcaagaagtgtatgtaaactc--cttgtcatggtagagttcggaagaaagg	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	51650442	caagaaatagatagatacctttcccttgtagctgtgaagtctgagaaattccaaaagtggatgtaaactctccttgtcatggaagagtttagcagaaagg	51650343	T

Q	193	tggtgattgaggaatttcacaccattcccaagtgtcttgtttagagt	239	Q
		\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|
T	51650342	tggcgattaaggaattgcacaccatttccaattgacttgttgagagt	51650296	T

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