View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854_low_29 (Length: 238)

Name: NF4854_low_29
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4854_low_29
NF4854_low_29
[»] chr5 (10 HSPs)
chr5 (1-238)||(3040312-3040546)
chr5 (1-85)||(30735373-30735457)
chr5 (17-85)||(25493791-25493859)
chr5 (2-85)||(40519151-40519234)
chr5 (15-69)||(30700936-30700990)
chr5 (2-85)||(30071743-30071826)
chr5 (16-72)||(20359896-20359952)
chr5 (15-65)||(24402035-24402085)
chr5 (4-37)||(34280161-34280194)
chr5 (40-80)||(21259195-21259235)
[»] chr2 (15 HSPs)
chr2 (1-85)||(20142940-20143024)
chr2 (1-85)||(13716762-13716846)
chr2 (1-80)||(32976074-32976153)
chr2 (1-82)||(38320252-38320333)
chr2 (1-82)||(31645149-31645231)
chr2 (1-85)||(37714395-37714479)
chr2 (1-85)||(37899555-37899639)
chr2 (4-85)||(19945779-19945860)
chr2 (1-69)||(35457389-35457456)
chr2 (1-52)||(27007174-27007225)
chr2 (1-67)||(3167886-3167952)
chr2 (1-71)||(4434283-4434353)
chr2 (1-73)||(27407406-27407478)
chr2 (1-52)||(14131161-14131212)
chr2 (1-85)||(24183943-24184027)
[»] chr8 (10 HSPs)
chr8 (1-85)||(38585140-38585224)
chr8 (15-85)||(29543678-29543748)
chr8 (1-69)||(29414370-29414438)
chr8 (15-85)||(24068182-24068252)
chr8 (15-85)||(36947291-36947363)
chr8 (1-65)||(33543341-33543404)
chr8 (41-85)||(35393712-35393756)
chr8 (1-37)||(5686342-5686378)
chr8 (33-85)||(5718539-5718591)
chr8 (4-52)||(26415557-26415605)
[»] chr1 (13 HSPs)
chr1 (1-85)||(35412998-35413082)
chr1 (1-84)||(10061565-10061648)
chr1 (4-85)||(21540046-21540127)
chr1 (15-81)||(35149730-35149796)
chr1 (15-85)||(48852615-48852685)
chr1 (1-69)||(49313595-49313663)
chr1 (15-73)||(26469928-26469986)
chr1 (1-85)||(11469995-11470080)
chr1 (1-85)||(43537197-43537284)
chr1 (1-80)||(29657341-29657420)
chr1 (1-52)||(13085093-13085144)
chr1 (15-85)||(23906672-23906742)
chr1 (53-85)||(13085134-13085166)
[»] chr7 (10 HSPs)
chr7 (1-80)||(23611801-23611880)
chr7 (1-80)||(46297590-46297669)
chr7 (15-85)||(8123663-8123733)
chr7 (16-80)||(20125567-20125631)
chr7 (10-69)||(44600996-44601055)
chr7 (1-85)||(21882821-21882905)
chr7 (1-85)||(22631452-22631536)
chr7 (1-91)||(23730555-23730645)
chr7 (15-52)||(46413812-46413849)
chr7 (1-69)||(24250506-24250574)
[»] chr6 (7 HSPs)
chr6 (1-80)||(32871805-32871884)
chr6 (1-85)||(2130544-2130628)
chr6 (1-71)||(34713487-34713557)
chr6 (1-85)||(6784754-6784838)
chr6 (1-85)||(28867157-28867241)
chr6 (1-64)||(6519233-6519296)
chr6 (15-86)||(11301807-11301878)
[»] chr4 (13 HSPs)
chr4 (1-85)||(19482490-19482574)
chr4 (3-80)||(41545392-41545469)
chr4 (1-82)||(51304351-51304431)
chr4 (1-73)||(25817649-25817721)
chr4 (1-52)||(29065330-29065381)
chr4 (15-85)||(24060548-24060618)
chr4 (15-84)||(42108752-42108821)
chr4 (1-91)||(42504246-42504333)
chr4 (1-72)||(5288507-5288578)
chr4 (15-85)||(37762777-37762849)
chr4 (1-85)||(16528535-16528619)
chr4 (15-70)||(13218442-13218497)
chr4 (20-78)||(41485716-41485774)
[»] chr3 (10 HSPs)
chr3 (15-81)||(10593526-10593592)
chr3 (1-80)||(1632786-1632864)
chr3 (15-85)||(45853000-45853070)
chr3 (1-52)||(18272015-18272066)
chr3 (1-52)||(26442954-26443005)
chr3 (1-72)||(40840700-40840771)
chr3 (15-85)||(34905818-34905888)
chr3 (4-49)||(1714033-1714078)
chr3 (1-85)||(48897732-48897816)
chr3 (15-65)||(2671895-2671945)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-83)||(69977-70059)
[»] scaffold0122 (1 HSPs)
scaffold0122 (15-85)||(18606-18676)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3040312 - 3040546
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcatagtgatatg 100  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3040312 ttgattttcaccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatgctcatagtgatatg 3040411  T
Q  101 cttatgtggatggagttaaaagtaaattcattgtaacggtctctatcatctannnnnnnnnnnnnnnnnnggcaatgcttgcctattttcggcacaagtg 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||| |||    
T  3040412 cttaagtggatggagttaaaagtaaattcattgtaacggtctctatcatcta-tttttttcttattttttggcaatgcttgcctattttcggcacaggtg 3040510  T
Q  201 actttgtaactgttttgtgatgtttttctctcgtaata 238  Q
    |||||||||||||||||||  || ||||||||||||||    
T  3040511 actttgtaactgttttgtg--gtgtttctctcgtaata 3040546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30735373 - 30735457
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||| ||||    
T  30735373 ttgatttccgccaaataacaaatttaattgattgagacattttcttgatatattcttaataaaaactatctagataaatagcaat 30735457  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 25493859 - 25493791
Alignment:
Q  17 aacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||    
T  25493859 aacaaatttaattggctgagacattttcttgatcaattcttgataaaaactctctagataaatagcaat 25493791  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 40519234 - 40519151
Alignment:
Q  2 tgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||  || |||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| |||||| ||||    
T  40519234 tgatttccatcaaataacaaatttaattggttgagacttattcttaataaattcttgataaaaactctctagataaatagcaat 40519151  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 30700936 - 30700990
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 69  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  30700936 ataacaaatttaattgattgagacattttcttaatatatttttgataaaaactct 30700990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 30071826 - 30071743
Alignment:
Q  2 tgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||  || |||| ||||||||||| ||||||| |||||||| |||||||| |||||||||||| ||| |||||| ||||    
T  30071826 tgatttccaacaaataataaatttaattggttgagaccttttcttgttaaattctagataaaaactctttagataaatagcaat 30071743  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 20359952 - 20359896
Alignment:
Q  16 taacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 72  Q
    ||||| ||||||||||  |||||||||||||||| |||||||||||||| |||||||    
T  20359952 taacagatttaattgaccgagacattttcttgatcaattcttgataaaatctctcta 20359896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 24402085 - 24402035
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 65  Q
    |||||||||||| ||| ||||||  ||||||||||||||||||||||||||    
T  24402085 ataacaaatttatttggttgagatcttttcttgataaattcttgataaaaa 24402035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 34280161 - 34280194
Alignment:
Q  4 atttccgccagataacaaatttaattgattgaga 37  Q
    |||||||||| |||||||||||||||||||||||    
T  34280161 atttccgccaaataacaaatttaattgattgaga 34280194  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 21259235 - 21259195
Alignment:
Q  40 ttttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  21259235 ttttctttatcaattcttgataaaaactctctagataaata 21259195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20143024 - 20142940
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  20143024 ttgatttccgccaaataataaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaataacaat 20142940  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13716762 - 13716846
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||| ||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  13716762 ttgattttcgccaaatcacaaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaatagcaat 13716846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32976074 - 32976153
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    |||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  32976074 ttgatttccgacaaataacaaatttaattggttgagacattttcttgatcaattcttgataaaatctctctagataaata 32976153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38320252 - 38320333
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataac 82  Q
    ||||||||| ||| |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  38320252 ttgatttccaccaaataacaaatttaattggttgaaaacttttcttgataaattcttgataaaaactctctagataaataac 38320333  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31645149 - 31645231
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttctt-gataaattcttgataaaaactctctaggtaaataac 82  Q
    ||||||||||||| || | ||||||||||| || ||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  31645149 ttgatttccgccaaattaaaaatttaattggttaagacattttttttgataaattcttgataaaaactctctagataaataac 31645231  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37714479 - 37714395
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||  || |||||||||||||||| |||| || ||||||||||||||  |||||||||||||||||| |||||| ||||    
T  37714479 ttgatttccatcaaataacaaatttaattggttgataccttttcttgataaatcattgataaaaactctctagataaatagcaat 37714395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37899555 - 37899639
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||| || || || ||||||||||||| |||| || ||||||||||||||| |||||||||||||||||| |||||| ||||    
T  37899555 ttgattttcgacaaatcacaaatttaattggttgaaaccttttcttgataaatttttgataaaaactctctagataaatagcaat 37899639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 19945779 - 19945860
Alignment:
Q  4 atttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||| || |||||||||||||||||  |||||||||| || |||||||||| ||||||||||||||  |||||| ||||    
T  19945779 atttccgtcaaataacaaatttaattgaccgagacatttttttaataaattcttaataaaaactctctaaataaatagcaat 19945860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35457456 - 35457389
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 69  Q
    ||||||||||| | |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  35457456 ttgatttccgctaaataataaatttaattgattgaaaccttttctt-ataaattcttgataaaaactct 35457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27007225 - 27007174
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    ||||||||||||| |||||||||||| ||| |||||||| ||||||||||||    
T  27007225 ttgatttccgccaaataacaaatttatttggttgagacaatttcttgataaa 27007174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3167952 - 3167886
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaact 67  Q
    |||||||||| || |||| ||||||||||| ||||||| ||||||| | |||||||| |||||||||    
T  3167952 ttgatttccgacaaataataaatttaattggttgagaccttttcttaacaaattcttaataaaaact 3167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4434353 - 4434283
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 71  Q
    ||||||| || || ||||||||||||||||| || ||| |||||||||| ||||||| |||||| ||||||    
T  4434353 ttgattttcggcaaataacaaatttaattgactgggaccttttcttgatcaattcttaataaaatctctct 4434283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27407478 - 27407406
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 73  Q
    ||||||||||  | ||||||||||||||||  ||| |  |||||||||| ||||||||||||| |||||||||    
T  27407478 ttgatttccggtaaataacaaatttaattggctgatatcttttcttgatcaattcttgataaacactctctag 27407406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14131212 - 14131161
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    ||||||||||||| |||||| ||||||||| |  ||||||||||||||||||    
T  14131212 ttgatttccgccaaataacagatttaattggtccagacattttcttgataaa 14131161  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24184027 - 24183943
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||| ||||| || |||| |||||||||||  ||| || ||||||||||||||| |  ||||||||||||||  |||| ||||||    
T  24184027 ttgagttccggcaaataataaatttaattggctgaaaccttttcttgataaattatgaataaaaactctctaaataaacaacaat 24183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38585140 - 38585224
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  38585140 ttgatttccgccaaatgacaaatttaattaattgaaacattttcttgataaattcttgataaaaactctctaaataaatatcaat 38585224  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 29543678 - 29543748
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| | |||||||||||    
T  29543678 ataacaaatttaattggttgagatattttcttgataaatttttgataaaaactctcttgataaataacaat 29543748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29414438 - 29414370
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 69  Q
    ||||||| || || ||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  29414438 ttgattttcggcaaataacaaatttaattggctgagacattttcttgatcaatttttgataaaaactct 29414370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 24068182 - 24068252
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||  |||||| |||||| ||| |||||||||||||| |||||||| |||||| ||||    
T  24068182 ataacaaatttaattggctgagactttttctcgatcaattcttgataaaatctctctagataaatagcaat 24068252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 36947291 - 36947363
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgata--aattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||||||| ||||||| ||  ||  |||||||||||||| |||||||| |||||||||||    
T  36947291 ataacaaatttaattgattgatacattttttttttatcaattcttgataaaatctctctagataaataacaat 36947363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33543404 - 33543341
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 65  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| || ||||||| ||||||||||    
T  33543404 ttgatttcagccaaataacaaattttattggttgagacatttt-tttataaatttttgataaaaa 33543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 35393756 - 35393712
Alignment:
Q  41 tttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||    
T  35393756 tttcttgatcaattcttgataaaaactctctagataaatagcaat 35393712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5686342 - 5686378
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgaga 37  Q
    |||||||||| || |||||||||||||||||||||||    
T  5686342 ttgatttccggcaaataacaaatttaattgattgaga 5686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 5718539 - 5718591
Alignment:
Q  33 tgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||| |||||||||| |||||||||||||| ||||| || |||||| ||||    
T  5718539 tgagaccttttcttgatcaattcttgataaaatctctcaagataaataccaat 5718591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 26415605 - 26415557
Alignment:
Q  4 atttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    ||||||| || |||| ||||||||||| ||||||| |||||||||||||    
T  26415605 atttccgtcaaataataaatttaattggttgagaccttttcttgataaa 26415557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35413082 - 35412998
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||| || |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||| ||||    
T  35413082 ttgatttccgtcaaataacaaatttaattggttgagaccttttcttgataaattattgataaaaactctctagataaatagcaat 35412998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 10061648 - 10061565
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaa 84  Q
    |||||||| | || |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  10061648 ttgatttctgtcaaataacaaatttaattggttgagacttttttttgataaattcttgataaaaactctctagataaataacaa 10061565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 21540127 - 21540046
Alignment:
Q  4 atttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||  |||||| ||||    
T  21540127 atttccgccaaataacaaatttaattggctgagacattttcttgataatttcttgataaaaactctctaaataaatagcaat 21540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 35149730 - 35149796
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataa 81  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  35149730 ataacaaatttaattggttaagatattttcttgataaattcttgataaaaactctctagataaataa 35149796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 48852685 - 48852615
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  48852685 ataacaaatttaattgattaaaacatttttttgataaattcttaataaaaactctctagataaataacaat 48852615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49313663 - 49313595
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 69  Q
    |||||||||| |  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  49313663 ttgatttccgactaataacaaatttaattaattgagacattttcttgatcaattcttgataaaaactct 49313595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 26469986 - 26469928
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 73  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26469986 ataataaatttaatttgttgagacattttcttgataaattcttgataaaaactctctag 26469928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11470080 - 11469995
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgat-aaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| |||||||||||||||| || ||| ||||||||||||||||||| || |||||||||||   |||||||||||    
T  11470080 ttgatttccgccaaataacaaatttaattggttaagatattttcttgataaattcttaataaaaaactctcttaataaataacaat 11469995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 43537197 - 43537284
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgat---aaaaactctctaggtaaataacaat 85  Q
    |||||||||| || ||||||||||||||||  |||||| |||||||||| ||||||||||   ||||||||||||| |||||||||||    
T  43537197 ttgatttccggcaaataacaaatttaattggctgagaccttttcttgattaattcttgataaaaaaaactctctagataaataacaat 43537284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29657420 - 29657341
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    ||||||| || || |||||||||||||||| ||||||| |||||||||  |||| ||||||||| |||||||| ||||||    
T  29657420 ttgattttcggcaaataacaaatttaattggttgagaccttttcttgaccaatttttgataaaatctctctagataaata 29657341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13085093 - 13085144
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    |||||||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  13085093 ttgatttccggcaaataacaaatttaattgactgagatattttcttgataaa 13085144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 23906672 - 23906742
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||  ||| || |||||||||| |||||||||||||| || ||||| |||||| ||||    
T  23906672 ataacaaatttaattggctgaaactttttcttgatcaattcttgataaaacctttctagataaatagcaat 23906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 13085134 - 13085166
Alignment:
Q  53 ttcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||||||| |||||||||||    
T  13085134 ttcttgataaaaactctctagataaataacaat 13085166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 23611801 - 23611880
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    |||||||||| || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23611801 ttgatttccgtcaaataacaaatttaatttgttgagacattttcttgataaattcttaataaaaactctctagataaata 23611880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 46297669 - 46297590
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    ||||||| || || |||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46297669 ttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaattcttgataaaaactctctagataaata 46297590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 8123733 - 8123663
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||| ||||    
T  8123733 ataacaaatttaattgactgagacattttcttgatcaattcatgataaaatctctctagataaatagcaat 8123663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 20125631 - 20125567
Alignment:
Q  16 taacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    |||||||||||||||  ||| ||||||||||||| |||||||||||||| |||||||| ||||||    
T  20125631 taacaaatttaattggctgacacattttcttgatcaattcttgataaaacctctctagataaata 20125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 44601055 - 44600996
Alignment:
Q  10 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 69  Q
    |||| ||||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  44601055 gccaaataacaaatttaattgattgaaacattttcttatcaaattcttgataaaaactct 44600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21882821 - 21882905
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||| || ||||||||||||||||  |||||  ||||||| || ||||||| |||||| |||||||| |||||| ||||    
T  21882821 ttgatttccggcaaataacaaatttaattggctgagatcttttcttaatcaattcttcataaaatctctctagataaatagcaat 21882905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22631536 - 22631452
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||| || ||||||||||||||||  |||||  |||||||||| ||||||| ||||||  ||| ||| |||||||||||    
T  22631536 ttgatttccgacaaataacaaatttaattggctgagatcttttcttgatcaattcttaataaaatatctttagataaataacaat 22631452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23730555 - 23730645
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcat 91  Q
    |||||||||| || ||||| |||||||||   ||| || |||||||||| |||||||||||||| |||||| | |||||| |||| |||||    
T  23730555 ttgatttccgacaaataacgaatttaatttgctgaaacgttttcttgatcaattcttgataaaatctctctcgataaatagcaatgttcat 23730645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 46413812 - 46413849
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaa 52  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46413812 ataacaaatttaattggttgagacattttcttgataaa 46413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24250506 - 24250574
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 69  Q
    |||||||||| || |||||||||| |||||  | |||  |||||||||| |||||||||||||| ||||    
T  24250506 ttgatttccgacaaataacaaattaaattggataagatcttttcttgatcaattcttgataaaatctct 24250574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 32871805 - 32871884
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    |||||||||| || |||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||    
T  32871805 ttgatttccgtcaaataacaaatttaattggttgaaaccttttcttgataaattcttgataaaaactctctagataaata 32871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2130544 - 2130628
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| |||||||||||||||| ||||||  ||||||||||||||| || || |||||||||||| |||||||||||    
T  2130544 ttgatttccgccaaataacaaatttaattggttgagattttttcttgataaattttttattaaaactctctagataaataacaat 2130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34713557 - 34713487
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 71  Q
    ||||||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  34713557 ttgattttcgccaaataacaaatttaattagttgagacaatttcttgataaattcttgataaaaactctct 34713487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6784754 - 6784838
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||| || ||||||||||||||||  |||||  |||| |||||||||| |||||||||||||||||| |||||| ||||    
T  6784754 ttgatttccgacaaataacaaatttaattggctgagatcttttattgataaattgttgataaaaactctctagataaatagcaat 6784838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28867241 - 28867157
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||  || ||||||||||||||||||||| || ||||||| || |||||||||||||| |||| ||| |||||||||||    
T  28867241 ttgatttccaacaaataacaaatttaattgattgaaactttttcttaatcaattcttgataaaatctctttagataaataacaat 28867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6519296 - 6519233
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaa 64  Q
    ||||||| || || ||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  6519296 ttgattttcggcaaataacaaatttaattgactgagacattttcttgatcaatttttgataaaa 6519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 11301878 - 11301807
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatc 86  Q
    |||||||||| |||||| |||||| ||||| |||| ||||||||||||||| ||||||  |||||| |||||    
T  11301878 ataacaaattcaattgactgagaccttttcatgatcaattcttgataaaaattctctatataaatagcaatc 11301807  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19482574 - 19482490
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||| |  |||||||||||| |||||| ||||    
T  19482574 ttgatttccgccaaataacaaatttaattggttgaaaaattttcttgataaattcttaaataaaactctctagataaatagcaat 19482490  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 41545469 - 41545392
Alignment:
Q  3 gatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    |||||| |||| |||||||||||||||| ||||| | |||||||||||||||||||||  ||||||||||| ||||||    
T  41545469 gatttctgccaaataacaaatttaattggttgaggccttttcttgataaattcttgatggaaactctctagataaata 41545392  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 51304351 - 51304431
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataac 82  Q
    |||||||||| || |||||||||||||||||||| || |||||||| ||| |||||| ||||||||||||||| ||||||||    
T  51304351 ttgatttccgtcaaataacaaatttaattgattgtgatattttctt-atatattcttaataaaaactctctagataaataac 51304431  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25817721 - 25817649
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 73  Q
    |||||||||| || ||||||||||||||||  |||||| |||||||||| ||||||||||||||  |||||||    
T  25817721 ttgatttccgtcaaataacaaatttaattggctgagaccttttcttgatcaattcttgataaaatgtctctag 25817649  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29065330 - 29065381
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  29065330 ttgatttccgtcaaataacaaatttaattgattgagactttttcttgataaa 29065381  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 24060618 - 24060548
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||||||||   | ||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  24060618 ataacaaatttaattagcttagacattttcttgatcaattcttgataaaaattctttagataaataacaat 24060548  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 42108752 - 42108821
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaa 84  Q
    ||||||||||||||||  ||| || |||||||||| ||||||||||||||| | ||||| ||||||||||    
T  42108752 ataacaaatttaattggctgaaactttttcttgatcaattcttgataaaaaatttctagataaataacaa 42108821  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 42504246 - 42504333
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcat 91  Q
    |||||||||| || |||||||||||||||| |||| |  |||||||||| |||||   ||||||||||||||| |||||| |||| |||||    
T  42504246 ttgatttccggcaaataacaaatttaattggttgaaatcttttcttgatcaattc---ataaaaactctctagataaatagcaatgttcat 42504333  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5288578 - 5288507
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 72  Q
    ||||||| || || ||||||||||||||||  |||||||||||||| || ||||||| |||||| |||||||    
T  5288578 ttgatttacggcaaataacaaatttaattggctgagacattttcttaatcaattcttaataaaatctctcta 5288507  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 37762849 - 37762777
Alignment:
Q  15 ataacaaatttaattgattgaga--cattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||||||||| ||| |   ||||||||||||||||||||||| |||||||| ||| |||||| ||||    
T  37762849 ataacaaatttaattggttgtgtggcattttcttgataaattcttgatgaaaactctttagataaatagcaat 37762777  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16528619 - 16528535
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||||||||| || ||||||||||||||||  |||||| || | ||||| ||||||  |||||| |||||||| |||||| ||||    
T  16528619 ttgatttccgacaaataacaaatttaattggctgagaccttctattgatcaattctaaataaaatctctctagataaatagcaat 16528535  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 13218497 - 13218442
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctc 70  Q
    |||||||||||||||||  ||||| ||||||| ||||||| || ||||||||||||    
T  13218497 ataacaaatttaattgaccgagaccttttcttaataaatttttaataaaaactctc 13218442  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 41485774 - 41485716
Alignment:
Q  20 aaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaa 78  Q
    |||||||||||  | | || |||||||||| ||||||||||||||||||||||| ||||    
T  41485774 aaatttaattggcttaaaccttttcttgatcaattcttgataaaaactctctagataaa 41485716  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 10593526 - 10593592
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataa 81  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||  |||||||    
T  10593526 ataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaataa 10593592  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1632864 - 1632786
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 80  Q
    ||||||||||| | |||||||||||||||  |||||||||||||||||| |||| |||||||||| ||||||| ||||||    
T  1632864 ttgatttccgcaaaataacaaatttaattagttgagacattttcttgat-aatttttgataaaaattctctagataaata 1632786  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 45853000 - 45853070
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    |||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||| ||| |||||||||||    
T  45853000 ataataaatttaattggttgagactttttcttgattaattcttgataaaatctctatagataaataacaat 45853070  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 18272015 - 18272066
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  18272015 ttgatttccgccaaataacaaatttaattggttgagatattttcttgataaa 18272066  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26443005 - 26442954
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 52  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  26443005 ttgatttccgccaaataacaaatttaattggttgagaccttttcttgataaa 26442954  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40840700 - 40840771
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 72  Q
    ||||||||||||| |||| ||||||||||  |||| ||||||| |||||||||  |||||||||| ||||||    
T  40840700 ttgatttccgccaaataataaatttaattagttgaaacatttttttgataaatatttgataaaaattctcta 40840771  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 34905888 - 34905818
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||| ||  |||||||||||||| || |||||||||||||| || ||||| |||||| ||||    
T  34905888 ataacaaatttaactggctgagacattttcttaatcaattcttgataaaatctatctagataaatagcaat 34905818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 1714033 - 1714078
Alignment:
Q  4 atttccgccagataacaaatttaattgattgagacattttcttgat 49  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||    
T  1714033 atttccgccaaataacaaatttaattgattgaaatattttcttgat 1714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 48897732 - 48897816
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||| || || ||||||||||||| |   ||| ||||||| ||||| |||||||||||||| |||||||| |||||| ||||    
T  48897732 ttgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttgataaaatctctctagataaatagcaat 48897816  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 2671945 - 2671895
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 65  Q
    ||||||||||||||||  ||| || |||||||||| |||||||||||||||    
T  2671945 ataacaaatttaattggctgacaccttttcttgatcaattcttgataaaaa 2671895  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 69977 - 70059
Alignment:
Q  1 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataaca 83  Q
    |||||||||| |  ||||||||||||||||  ||| || |||||||||| |||| | |||||||||||||||| |||||||||    
T  69977 ttgatttccggccaataacaaatttaattggctgaaaccttttcttgatcaattttagataaaaactctctagataaataaca 70059  T

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Target: scaffold0122 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 18676 - 18606
Alignment:
Q  15 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 85  Q
    ||||||||||||||||| | |||| |||||||||| ||||||| |||||| |||| ||| |||||| ||||    
T  18676 ataacaaatttaattgactaagactttttcttgatcaattcttaataaaatctctttagataaatagcaat 18606  T

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