View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_low_3 (Length: 545)
Name: NF4854_low_3
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 526
Target Start/End: Original strand, 20898210 - 20898710
Alignment:
| Q |
14 |
tgaaggcattagtgctacgtgagaagggggacaaacttacctctgaattcaccagcaatgagaaatttgtgtatttgattagttctcttttcaatccagg |
113 |
Q |
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| T |
20898210 |
tgaaggcattagtgctacgtgagaaggaggacaaacttacctctgaattcaccagcaaagagaaatttgtgtatttgattagttctcttttcaatccagg |
20898309 |
T |
|
| Q |
114 |
tatgcaaattttgagcggcttgc----ttacaatataattgcatcaatgaaccattttatgctcatacatttttcggtgttttggttctacggtgatatt |
209 |
Q |
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| T |
20898310 |
tatgcaaattttgagcggcttgcatgcttacgatataattgcatcaatgaaccattttatgctcatacatttttcggt----------------gatatt |
20898393 |
T |
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| Q |
210 |
tgcagaggggtatttccttagaaggaagatcaactccaatcaagaggagattgagataccatctttaataagagatattcatggtgctcctcctgaaagc |
309 |
Q |
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| T |
20898394 |
tgcagaggggtatttccttagaaggaagatcaactccaatcaagaggagattgagataccatctttaataagagatattcatggtgctcctcctgaaagc |
20898493 |
T |
|
| Q |
310 |
cttgttgttaaactagctgaagtaatcggaaacttgaagacccttcgagaaatggaaattttttggtgcagggttgttgctgaagtatgtttagctcaat |
409 |
Q |
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| T |
20898494 |
cttgttgttaaactagctgaagtaatcggaaacttgaagacccttcgagaaatggaaattttttggtgcagggttattgctgaagtatgtttagctcaat |
20898593 |
T |
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| Q |
410 |
atgaaatttcatgttttgataattaactgttaaattgataatttggttgtttatgattattttttacttttgcagataagaaaactttggtccgaagaaa |
509 |
Q |
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| T |
20898594 |
atgaaatttcatgttttgataattaactgttaaattgataatttggttgtttatgattattttttacttttgcagataagaaaactttggtccgaagaaa |
20898693 |
T |
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| Q |
510 |
agcatttacctggagtc |
526 |
Q |
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| T |
20898694 |
agcatttacctggagtc |
20898710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 204 - 402
Target Start/End: Original strand, 40698993 - 40699191
Alignment:
| Q |
204 |
gatatttgcagaggggtatttccttagaaggaagatcaactccaatcaagaggagattgagataccatctttaataagagatattcatggtgctcctcct |
303 |
Q |
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|||||| |||||||| |||||||||||||||||||||| ||||| | ||||| | ||| || ||||||| |||||||||||| |||||||||||| |
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| T |
40698993 |
gatattcgcagagggagatttccttagaaggaagatcaattccaacccagagggaaatgatatgacatctttgccaagagatattcacggtgctcctcct |
40699092 |
T |
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| Q |
304 |
gaaagccttgttgttaaactagctgaagtaatcggaaacttgaagacccttcgagaaatggaaattttttggtgcagggttgttgctgaagtatgttta |
402 |
Q |
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| T |
40699093 |
gaaagtcttgttgtgaagttggctgaaattgttggaaactacaagaccgtacgaaaaatggctctgttctggtgcagggttgttgaagaagtatgttta |
40699191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 40698773 - 40698874
Alignment:
| Q |
16 |
aaggcattagtgctacgtgagaagggggacaaacttacctctgaattcaccagcaatgagaaatttgtgtatttgattagttctcttttcaatccaggta |
115 |
Q |
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||||| |||||| | || ||||||| ||| |||||||||||||| || | |||||||||||| ||||| ||||||| | ||||||||| ||||||||| |
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| T |
40698773 |
aaggctttagtgttgcgagagaaggaggataaacttacctctgagtttagtagcaatgagaaagttgtgcatttgatcaattctctttttgatccaggta |
40698872 |
T |
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| Q |
116 |
tg |
117 |
Q |
| |
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|| |
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| T |
40698873 |
tg |
40698874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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