View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_low_31 (Length: 230)
Name: NF4854_low_31
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48592395 - 48592180
Alignment:
| Q |
1 |
ttgggtgcgaatcggtagaaattgtgcaatgtttcgattacccaagagatcagtgttgctgagctttttaataaatttccaataagtcccataaggagcg |
100 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592395 |
ttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcg |
48592296 |
T |
|
| Q |
101 |
aaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592295 |
aaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcga |
48592196 |
T |
|
| Q |
201 |
gtgatggagtgttaac |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
48592195 |
gtgatggagtgttaac |
48592180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 48602090 - 48601875
Alignment:
| Q |
1 |
ttgggtgcgaatcggtagaaattgtgcaatgtttcgattacccaagagatcagtgttgctgagctttttaataaatttccaataagtcccataaggagcg |
100 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602090 |
ttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcg |
48601991 |
T |
|
| Q |
101 |
aaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601990 |
aaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcga |
48601891 |
T |
|
| Q |
201 |
gtgatggagtgttaac |
216 |
Q |
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|||||||||||||||| |
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| T |
48601890 |
gtgatggagtgttaac |
48601875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23231937 - 23232152
Alignment:
| Q |
1 |
ttgggtgcgaatcggtagaaattgtgcaatgtttcgattacccaagagatcagtgttgctgagctttttaataaatttccaataagtcccataaggagcg |
100 |
Q |
| |
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|||||| ||||||||||| ||||| ||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231937 |
ttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcg |
23232036 |
T |
|
| Q |
101 |
aaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232037 |
aaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcga |
23232136 |
T |
|
| Q |
201 |
gtgatggagtgttaac |
216 |
Q |
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|||||||||||||||| |
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| T |
23232137 |
gtgatggagtgttaac |
23232152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 23224665 - 23224810
Alignment:
| Q |
62 |
agctttttaataaatttccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgag |
161 |
Q |
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|||||||| || ||||||||||| | ||||||||| || ||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||||||| || |
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| T |
23224665 |
agctttttgatgaatttccaatatgccccataaggggcaaaagcaaaagtagcatcatcgtagacaactgtgttgatggcaatgttcattttacgggaag |
23224764 |
T |
|
| Q |
162 |
aataagtgagctcatgtgtcttgagaaactctttggcgagtgatgg |
207 |
Q |
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||||| ||||| | ||| |||||||||||||| ||||||||||| |
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| T |
23224765 |
aataaacaagctcgtttgttttgagaaactcttttgcgagtgatgg |
23224810 |
T |
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