View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4854_low_5 (Length: 435)

Name: NF4854_low_5
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4854_low_5
NF4854_low_5
[»] chr4 (7 HSPs)
chr4 (12-421)||(46012902-46013313)
chr4 (77-272)||(46019242-46019444)
chr4 (331-421)||(46247275-46247365)
chr4 (274-421)||(46019482-46019629)
chr4 (12-56)||(46019200-46019244)
chr4 (357-421)||(18628489-18628553)
chr4 (77-113)||(46247363-46247399)
[»] chr1 (2 HSPs)
chr1 (357-421)||(4033953-4034017)
chr1 (347-390)||(33723308-33723351)
[»] chr8 (2 HSPs)
chr8 (360-422)||(7918720-7918782)
chr8 (340-413)||(39389095-39389168)
[»] chr7 (3 HSPs)
chr7 (334-421)||(23214925-23215012)
chr7 (374-421)||(36537978-36538025)
chr7 (357-418)||(17942144-17942205)
[»] chr3 (2 HSPs)
chr3 (374-417)||(50015960-50016003)
chr3 (337-409)||(20210844-20210916)
[»] chr2 (3 HSPs)
chr2 (375-421)||(16552510-16552556)
chr2 (357-413)||(2964745-2964801)
chr2 (357-413)||(13866956-13867012)
[»] chr5 (2 HSPs)
chr5 (357-421)||(14599308-14599372)
chr5 (349-413)||(41112826-41112890)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 46012902 - 46013313
Alignment:
Q  12 atcatcccaaatctctccaaaggcatgtgacagcataaacatttatccacccactaagggtgcggttagtagtacaatggaaagggatggtgtaaaaatg 111  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46012902 atcaacccaaatctctccaaaggcatgtgacagtataaacatttatccaccaactaagggtgcggttagtagtacaatggaaagggatggtgtaaaaatg 46013001  T
Q  112 gacctcaaaccaaaccctcaccctcataattgctttctatccaccggagatcatataaacccaaagacatnnnnnnn--tggaatttggatcccaaaagt 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||         |||||||||||||||||||||    
T  46013002 gacttcaaaccaaaccctcaccctcataattgctttctatccaccggtgaccatataaaaccaaagacataaaaaaaaatggaatttggatcccaaaagt 46013101  T
Q  210 ttatttagcacattatagttcaaataagactcaaattcaacattgcaaaaacattacattcccgatgttcccaaaacaaatgtcattatcaatccagata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46013102 ttatttagcacattatagttcaaataagactcaaattcaacattgcaaaaacattacattcccgatgtttccaaaacaaatgtcattatcaatccagata 46013201  T
Q  310 taatcggtctcaaataacataggaagagtatgtttcaattgatttaattgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46013202 taatcggtctcaaataacataggaagagtatgtttcaattgatttaattgaacttatctaccagcataaacacttgtgagattgtctgagagatcttatg 46013301  T
Q  410 aaaagaacttat 421  Q
    ||||||||||||    
T  46013302 aaaagaacttat 46013313  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 46019242 - 46019444
Alignment:
Q  77 ttagtagtacaatggaaagggatggtgtaaaaatggacctcaaaccaaaccctcaccctcataattgctttctatccaccggagatcatataaacccaaa 176  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| || || |||||||| |||||    
T  46019242 ttagtagtacaatggaaagtgatggtgtaaaaatggacctcaaacc-aacactcaccgtcataattgctttctatccactggcgaccatataaaaccaaa 46019340  T
Q  177 gacat--------nnnnnnntggaatttggatcccaaaagtttatttagcacattatagttcaaataagactcaaattcaacattgcaaaaacattacat 268  Q
    |||||               |||||||||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  46019341 gacataaaagagcttgtgtatggaatttggatcccaaatgtttattaagtacattatagctcaaataagactctaattcaacattacaaaaacattacat 46019440  T
Q  269 tccc 272  Q
    ||||    
T  46019441 tccc 46019444  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 46247365 - 46247275
Alignment:
Q  331 ggaagagtatgtttcaattgatttaattgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46247365 ggaagagtatgtttcaattgatttaattgaacttatctaccagcataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 46247275  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 274 - 421
Target Start/End: Original strand, 46019482 - 46019629
Alignment:
Q  274 atgttcccaaaacaaatgtcattatcaatccagatataatcggtctcaaataacataggaagagtatgtttcaattgatttaattgaacttatctaccac 373  Q
    ||||| |||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| |||||||||| |||| ||||| ||| |     
T  46019482 atgttaccaaaacaaatgtcattatcaacccggatataattggtctcaaataacagaggaagagtatgtttgaattgatttatttgagcttatgtactag 46019581  T
Q  374 cataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
     ||||| |||||||||||||||||| |||  |||| || |||||||||    
T  46019582 tataaaaacttgtgagattgtctgaaagagtttataaacagaacttat 46019629  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 46019200 - 46019244
Alignment:
Q  12 atcatcccaaatctctccaaaggcatgtgacagcataaacattta 56  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  46019200 atcaacccaaatctctccaaaggcatgtgacagtataaacattta 46019244  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 18628489 - 18628553
Alignment:
Q  357 ttgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    |||| |||||||||   ||||||||||||||||| ||| || |||| |||||||||| |||||||    
T  18628489 ttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 46247399 - 46247363
Alignment:
Q  77 ttagtagtacaatggaaagggatggtgtaaaaatgga 113  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  46247399 ttagtagcacaatggaaagtgatggtgtaaaaatgga 46247363  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 4033953 - 4034017
Alignment:
Q  357 ttgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    |||||||| |||||   ||||||||||||||||||||| ||||||| |||||||||| |||||||    
T  4033953 ttgaacttgtctactggcataaacacttgtgagattgtttgagagagcttatgaaaataacttat 4034017  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 33723308 - 33723351
Alignment:
Q  347 attgatttaattgaacttatctaccaccataaacacttgtgaga 390  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||    
T  33723308 attgacttatttgaacttatctactaccataaacacttgtgaga 33723351  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Original strand, 7918720 - 7918782
Alignment:
Q  360 aacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaacttatt 422  Q
    ||||||||||| | ||||||||||||||||| ||| || |||| |||||||||| ||||||||    
T  7918720 aacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttatt 7918782  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 39389095 - 39389168
Alignment:
Q  340 tgtttcaattgatttaattgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaa 413  Q
    ||||| ||| || ||| ||||||||||||||  |||||||| ||||||||||||  ||||||| |||| |||||    
T  39389095 tgtttgaatcgacttatttgaacttatctactgccataaacgcttgtgagattgaatgagagaacttaggaaaa 39389168  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 23215012 - 23214925
Alignment:
Q  334 agagtatgtttcaattgatttaattgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    |||| ||||||  ||||| ||| |||| ||||||||| | ||||||||||| ||||| ||| |||||||  ||||||||| |||||||    
T  23215012 agagcatgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttat 23214925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 36538025 - 36537978
Alignment:
Q  374 cataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    ||||||||||||||||||||| ||||||| |||||| ||| |||||||    
T  36538025 cataaacacttgtgagattgtttgagagaacttatggaaacaacttat 36537978  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 17942205 - 17942144
Alignment:
Q  357 ttgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaact 418  Q
    |||| |||||||||  | |||||||| ||||||| ||||||||||| |||||||||| ||||    
T  17942205 ttgagcttatctactgcaataaacacctgtgagactgtctgagagaacttatgaaaacaact 17942144  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 50016003 - 50015960
Alignment:
Q  374 cataaacacttgtgagattgtctgagagatcttatgaaaagaac 417  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  50016003 cataaacacttgtgagactgtttgagagaacttatgaaaagaac 50015960  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 20210844 - 20210916
Alignment:
Q  337 gtatgtttcaattgatttaattgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatg 409  Q
    ||||||||  ||||||||| ||||  ||||||||   ||||| ||||||||||| ||| ||||||||||||||    
T  20210844 gtatgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttatg 20210916  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 16552510 - 16552556
Alignment:
Q  375 ataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    |||||||||||||||||||| ||  |||||||||||||||| |||||    
T  16552510 ataaacacttgtgagattgtttgttagatcttatgaaaagatcttat 16552556  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 2964745 - 2964801
Alignment:
Q  357 ttgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaa 413  Q
    |||||||||||||||  |||||||||||| |||| ||| |||| || ||||||||||    
T  2964745 ttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaa 2964801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 13867012 - 13866956
Alignment:
Q  357 ttgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaa 413  Q
    |||| |||||||||  |||||||||||||||||| ||| ||||||| |||| |||||    
T  13867012 ttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaa 13866956  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 14599308 - 14599372
Alignment:
Q  357 ttgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaagaacttat 421  Q
    |||||||||| ||| | ||||||||||||| ||||||| ||||||| |||||  ||| |||||||    
T  14599308 ttgaacttatttactagcataaacacttgtaagattgtttgagagagcttatcgaaacaacttat 14599372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 41112826 - 41112890
Alignment:
Q  349 tgatttaattgaacttatctaccaccataaacacttgtgagattgtctgagagatcttatgaaaa 413  Q
    ||||||| |||| |||||||||   ||||||||||||||| ||||||||  ||| ||||||||||    
T  41112826 tgatttatttgagcttatctacttgcataaacacttgtgacattgtctggcagaacttatgaaaa 41112890  T

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