View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_low_6 (Length: 409)
Name: NF4854_low_6
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 321
Target Start/End: Original strand, 25953139 - 25953410
Alignment:
| Q |
45 |
aagaaatataatcatacaaaaaacaaacttgagaatttcatccatatatttcctcttttatgtaactaatagaatatggtttgatcatttatagtgtttt |
144 |
Q |
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| T |
25953139 |
aagaaatataatcatacaaaaaacaaacttgagaatttcatccatatatttcctcttttatgtaactaatagaatatggtttgatcatttatagtgtttt |
25953238 |
T |
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| Q |
145 |
aagttattgttctctcttaaaaataattaaatatttttcacccttttgaagttatnnnnnnnncttcataatattataattattatgaaatatctcataa |
244 |
Q |
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| T |
25953239 |
aagttat--ttctctcttaaaaataattaaatatttttcacccttttgaagttat-aaaaaaacttcataatattataattattatgaaatatctcataa |
25953335 |
T |
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| Q |
245 |
gaatattattgtgttatgtttttccattttacacacataggaatgaggtcacatgataaacttgtcaatcataagta |
321 |
Q |
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| T |
25953336 |
gaatatta-tgtatta-cattttccattttaggcacctaggaaggaggtcacatgataaacttgtcaatcataagta |
25953410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 6119905 - 6119860
Alignment:
| Q |
46 |
agaaatataatcatacaaaaaacaaacttgagaatttcatccatat |
91 |
Q |
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| T |
6119905 |
agaaatataatcataaaacaaacaaacttgagaatttcagccatat |
6119860 |
T |
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