View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_low_8 (Length: 406)
Name: NF4854_low_8
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 38102492 - 38102105
Alignment:
| Q |
1 |
ccatcaatttgttttctcaaagaagaatagaacctagagagactcactcactcatgggataggaagataactacactggaatcacatctttgatgtatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38102492 |
ccatcaatttgttttctcaaagaagaatagaacctagagagactcactcactcatgggataggaagataactacactggaatcacatctttgatgtatct |
38102393 |
T |
|
| Q |
101 |
tcgcatctcaaaacaataccttcattggcatccggtcgtcaaaggctcaggtggaggcacaatcataagtacattgtcatttctatgaacaactcccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38102392 |
tcgcatctcaaaacaataccttcattggcatccggtcgtcaaaggctcaggtggaggcacaatcataagtacattgtcatttctatgaacaactcccatt |
38102293 |
T |
|
| Q |
201 |
acgctaaccgtgctaccttcttttatgtacctacaaaaacatcgtagccgccactttcataagaactacattttcttcgtgtattttttatttaaacaag |
300 |
Q |
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| T |
38102292 |
acgctaaccgtgctaccttcttttatgtacctacaaaaacatcgtagccgccactttcataagaactacattttcttcgtgtattttttatttaaacaag |
38102193 |
T |
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| Q |
301 |
ataaagaaagtactgtatacccttcttttaactgcatgatacgatcatcactagaaaggtttctcttccccaaccatcgaaggaaatc |
388 |
Q |
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| T |
38102192 |
ataaagaaagtactgtatacccttcttttaactgcatgatacgatcatcactagaaaggtttctcttccccaaccatcgaaggaaatc |
38102105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 123 - 388
Target Start/End: Original strand, 300110 - 300369
Alignment:
| Q |
123 |
cattggcatccggtcgtcaaaggctcaggtggaggcacaatcataagtacattgtcatttctatgaacaactcccattacgctaaccgtgctaccttctt |
222 |
Q |
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| T |
300110 |
cattggcatccggtcgtcaaaggctcaggcggaggcacaatcataagtacattgtcatttctatgaacaactcccattacactaaccgtgctaccttctt |
300209 |
T |
|
| Q |
223 |
ttatgtacctacaaaaacatcgtagccgccactttcataagaactacattttcttcgtgtattttttatttaaacaagataaagaaagtactgtataccc |
322 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||| | ||| |||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
300210 |
ttatgtacctacaaaaacatcatagccgccagtttcataagaacttctttt-----gtgtattttttagttaaacaagat-aagaaagtactatataccc |
300303 |
T |
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| Q |
323 |
ttcttttaactgcatgatacgatcatcactagaaaggtttctcttccccaaccatcgaaggaaatc |
388 |
Q |
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| T |
300304 |
ttcttttaactgcatgatacgatcatcactagaaaggtttctcttccctaaccatcgaaggaaatc |
300369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 299955 - 300082
Alignment:
| Q |
1 |
ccatcaatttgttttctcaaagaagaatagaacctagagagactcactcactcatgggataggaagataactacactggaatcac----atctttgatgt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
299955 |
ccatcaatttgttttctcaaagaagaatagaacctagagagactcactcactcaggggataagaagataactacactggaatcacatcaatctttgatgt |
300054 |
T |
|
| Q |
97 |
atcttcgcatctcaaaacaataccttca |
124 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
300055 |
atcttcgcatctcaaaacaataccttca |
300082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 1322932 - 1322853
Alignment:
| Q |
144 |
ggctcaggtggaggcacaatcataagtacattgtcatttctatgaacaactcccattacgctaaccgtgctaccttcttt |
223 |
Q |
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||||| |||||||| ||||||||||| || || ||||| || |||||||| |||||||| || |||||||| |||||||| |
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| T |
1322932 |
ggctctggtggaggaacaatcataagcacgttctcattcctgtgaacaacccccattacactcaccgtgcttccttcttt |
1322853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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