View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4854_low_9 (Length: 402)
Name: NF4854_low_9
Description: NF4854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4854_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 5755651 - 5755926
Alignment:
| Q |
1 |
ataattctactatcacttcttcaaatacataaataaataccataattcaaactttcttaggtatatatattgcaccattaggccttgttttctaacacaa |
100 |
Q |
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| T |
5755651 |
ataattctactatcacttcttcaaatacataaataaataccataattcaaacttccttaggtatatatattgcaccattaggccttgttttctaacacag |
5755750 |
T |
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| Q |
101 |
cgagtttgtctaaatcacgagtttgtttcagataacaccgtgatatcaaacat--acacttaatatggtttcatagcttaagaaaaatcaaaaacaaatt |
198 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5755751 |
tgagtttgtctaaatcacgagtttgtttctgctaacaccgtgatatcaaacatacacacttaatatggtttcatagcttaagaaaaatcaaaaaca---- |
5755846 |
T |
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| Q |
199 |
aaatttggtggatcttatgctagtatgctacnnnnnnnnnccaagttcaaaattacattttgtgattatttctatgtaac |
278 |
Q |
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| T |
5755847 |
aaatttggtggatcttatgctagtatgctactttttttttccaagttcaaaattacattttgtgattatttctatgtaac |
5755926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 5755999 - 5756035
Alignment:
| Q |
351 |
aagaatgatgaaggttcagagttgccatcatcaaagg |
387 |
Q |
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| T |
5755999 |
aagaatgatgaaggttcagagttgccatcatcaaagg |
5756035 |
T |
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