View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4855-Insertion-10 (Length: 416)

Name: NF4855-Insertion-10
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4855-Insertion-10
NF4855-Insertion-10
[»] chr6 (6 HSPs)
chr6 (113-295)||(14043925-14044102)
chr6 (20-107)||(13929385-13929472)
chr6 (20-107)||(14043575-14043662)
chr6 (145-231)||(13929767-13929855)
chr6 (358-416)||(13929861-13929919)
chr6 (237-295)||(14039033-14039091)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 295
Target Start/End: Original strand, 14043925 - 14044102
Alignment:
Q  113 ataataattatgtcaggcagattacttcgctccatttagttaggaagaggtat--cttaataaattcataactataatcagaacatctcctcagttatga 210  Q
    |||||||||  |||||| |||||  || ||| |||||||||| |||||| |||  ||| ||| ||||||||||| |||||||| ||||||||||||||||    
T  14043925 ataataatttcgtcaggaagatttgttagctacatttagttacgaagagatatatcttcatacattcataactaaaatcagaaaatctcctcagttatga 14044024  T
Q  211 cataatgtttgttttacaacttgtatctatgtagccaacttgtttctgttcagtgtaacatcttattcttaccacatccttattt 295  Q
     |||||||||||| |||||       |||||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  14044025 gataatgtttgttgtacaa-------ctatgtagacaacttgtttctattcaatataacatcttattcttaccacatccttattt 14044102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 13929385 - 13929472
Alignment:
Q  20 attttcgaacacacgaattgaattgtgtcgggtgtatactatcaagtctccaaaacaaacatttatttacaaaataggaatcggtgta 107  Q
    ||||||||||| || ||||||||||||||||| ||  ||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  13929385 attttcgaacaaacaaattgaattgtgtcgggggttcactatcaggtctccgaaacaaacatttattgacaaaataggaatcggtgta 13929472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 14043575 - 14043662
Alignment:
Q  20 attttcgaacacacgaattgaattgtgtcgggtgtatactatcaagtctccaaaacaaacatttatttacaaaataggaatcggtgta 107  Q
    ||||||||||| || ||||||||||||||||| ||| ||||||| |||||  ||||||||||||||| ||||||||||||||||||||    
T  14043575 attttcgaacaaacaaattgaattgtgtcgggggtacactatcaggtctcggaaacaaacatttattgacaaaataggaatcggtgta 14043662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 13929767 - 13929855
Alignment:
Q  145 catttagttaggaagaggtat--cttaataaattcataactataatcagaacatctcctcagttatgacataatgtttgttttacaact 231  Q
    |||||||||| |||||| |||  ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||    
T  13929767 catttagttaagaagagatatatcttcataaattcataactataatcagaaaatctcctcagttatgagataatgtttattgtacaact 13929855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 13929861 - 13929919
Alignment:
Q  358 gagcaatccaagcatgaatagtcatccacattttgagccaaaatatatccttcccacta 416  Q
    ||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||    
T  13929861 gagcaatccaaacatggatagtcgtccacattttgggccaaaatatatccttcccacta 13929919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 14039033 - 14039091
Alignment:
Q  237 ctatgtagccaacttgtttctgttcagtgtaacatcttattcttaccacatccttattt 295  Q
    |||||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  14039033 ctatgtagacaacttgtttctattcaatataacatcttattcttaccacatccttattt 14039091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University