View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855-Insertion-11 (Length: 341)
Name: NF4855-Insertion-11
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 27 - 341
Target Start/End: Original strand, 45512379 - 45512695
Alignment:
| Q |
27 |
cttccattctcaatatttgtttttatatgaacatcacttccatttttcctgcaagtgtttgatgaaaaaataagtatgtccaatttcttaattcgcaatg |
126 |
Q |
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| T |
45512379 |
cttccattctcaatatttgtttttatatgaacagcacttccatttttcctgcaattgtttgatgaagaaataagtatgtccaatttcttaattcgcaatg |
45512478 |
T |
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| Q |
127 |
agacttaccaatcttatcat----gaagatcccattctatggtggaacggatacaataccaaaccctacctaatttttaagatcaaggaacattgtgtaa |
222 |
Q |
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| T |
45512479 |
agacttaccaatcttatcatgatcgaagatcccattctatggtggaacggatacaataccaaaccctacctaatttttaagatcaaggaacattgtgtga |
45512578 |
T |
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| Q |
223 |
ctatgctagatcctatctaatatcatcaattccattactttgatattattttcttaatttaaatcatctttcattgggttaattaaatcaaaatttgaat |
322 |
Q |
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| T |
45512579 |
ctatgctagatcctatcta--atcatcaattccattactttgatattattttcttaatttaaatcatctttcattgggttaattaaatcaaaatttgaat |
45512676 |
T |
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| Q |
323 |
gttggtagaaatcaatata |
341 |
Q |
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| T |
45512677 |
gttggtagaaatcaatata |
45512695 |
T |
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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 35744195 - 35744272
Alignment:
| Q |
85 |
ttgatgaaaaaataagtatgtccaatttcttaattcgcaatgagacttaccaatcttatcatgaagatcccattctatg |
163 |
Q |
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| T |
35744195 |
ttgatgaagaaataag-atgtccattttcttaattcgcaatgagacttaccaatcttgtcatgaagatcccattctatg |
35744272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 29264921 - 29264853
Alignment:
| Q |
250 |
aattccattactttgata-ttattttcttaatttaaatcatctttcattgggttaattaaatcaaaatt |
317 |
Q |
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| T |
29264921 |
aattccatttctttgatgcttattttcttaattgaaattatctttcattaggttaatcaaatcaaaatt |
29264853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 29108537 - 29108585
Alignment:
| Q |
268 |
ttattttcttaatttaaatcatctttcattgggttaattaaatcaaaat |
316 |
Q |
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| T |
29108537 |
ttattttcttaattgaaattatctttcattaggttaatcaaatcaaaat |
29108585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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