View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855-Insertion-12 (Length: 271)
Name: NF4855-Insertion-12
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 33531318 - 33531072
Alignment:
| Q |
8 |
aggctcttcaagttcactttaacaaatgcagtgaggccaggaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgt |
107 |
Q |
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| T |
33531318 |
aggctcttcaagttcactttaacaaatgcagtgaggccaggaaagtcaaggattggaaagttatattgaaggaaacacagtctgcaatatccttaggtgt |
33531219 |
T |
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| Q |
108 |
ggattcagctccaaaggttagtttctttggttaaatgttttattttaggcactcctgcannnnnnnnaatcatatgttactcaactcattggccaataac |
207 |
Q |
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| T |
33531218 |
ggattcagctccaaaggttagtttctttggttaaatgttttattttaggcactcctacattttttttaatcatatgttactcaactcattggccaataac |
33531119 |
T |
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| Q |
208 |
cctcttatgctgattnnnnnnntggttatgtctaccaggtctctgct |
254 |
Q |
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| T |
33531118 |
cctcttatgctgattaaaaaaatggttatgtctaccaggtctatgct |
33531072 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 26209143 - 26209083
Alignment:
| Q |
76 |
aaggaaacacagtctgcaatatccttaggtgtggattcagctccaaaggttagtttctttg |
136 |
Q |
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| T |
26209143 |
aaggaaacacagtctgcattatccttaggtgccgattcagctccacaggttagttcctttg |
26209083 |
T |
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