View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855-Insertion-3 (Length: 941)
Name: NF4855-Insertion-3
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 150 - 941
Target Start/End: Complemental strand, 2498084 - 2497314
Alignment:
| Q |
150 |
tgcaagagcgtgttgttaggcaatttggacatgttgaaagcatctatatacacaaattgtcgccgttgcacgtataattt-gtgataatgaacactattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2498084 |
tgcaagagcgtgttgttaggcaatttggacatgttgaaagcatctatatacacaaattgtcgccgttgcacgtataattttgtgataatgaacactattt |
2497985 |
T |
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| Q |
249 |
gtgtatcagaatgttttatcgtaattgtttcattttcatgttttgttaatgaacataagttgttcttatcattagtctatgtgtctttgagtatggaatg |
348 |
Q |
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| T |
2497984 |
gtgtatcagaatgttatatcgtaattgtttcattttcatgttttgttaatgaacataaattgttcttatcattagtctatgtgtctttgagtatggattg |
2497885 |
T |
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| Q |
349 |
atacaccaaaattgttttcaaagttgaggtatgtctaagactccaagaaaagaaatgcattatgctaatttcgccagttttagttcataagttatgatgt |
448 |
Q |
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| T |
2497884 |
atacaccaaaattgttttcaaagttgaggtatgtctaagactccaagaaaagaaatgcattatgctaatttcgccagttttagttcataagttatgat-- |
2497787 |
T |
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| Q |
449 |
acatgtacctaaaagttgtataaacacctgatccatgttttttctatatttatatccatcgaaagttatctttctaggtgatcggttcgaaccttctgac |
548 |
Q |
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| T |
2497786 |
----gtacctaaaagttgtataaacacctgatccatgttttttctatatttatatccatcgaaagttatctttctaggtgatcggttcgaaccttctgac |
2497691 |
T |
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| Q |
549 |
tgtttaaaacgaagtcattttggaggcttgtgagcaatagagagggcctataaagcagttttcaaattatagtttaactttggcccacctctagtttggc |
648 |
Q |
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| T |
2497690 |
tgtttaaaacgaagtcattttggaggcttgtgagcaatagagagggcctataaagcagttttcaaattatagtttaac----------------tttggc |
2497607 |
T |
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| Q |
649 |
tagtgtctagctattaagtagtagttttcaaggctgatatattctaatttgagaatttctttttccaccttcctt-gcgtcttcccgcgccccttaaaaa |
747 |
Q |
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| T |
2497606 |
tagtgtctagctatta---attagttttcaaggctgatatattctaatttgagaatttctttttccaccctccttagcgtctccccgcg-cccttaaaaa |
2497511 |
T |
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| Q |
748 |
tttcaaaaattcccttgaattttagg-ttttataatctaaaatgagtttttcctcta-tttcaaagtgtcaaaaattagacaccggtcgttttagccacg |
845 |
Q |
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| T |
2497510 |
tttcaaaaattcccttgaattttaggattttataatctaaaatgagtttttcctctattttcaaagtgtcaaaaattagacacc-gtcgttttagccacg |
2497412 |
T |
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| Q |
846 |
gttcaaccgcgactaattgtt--gttttttcttcaccacttcgaattataaaatccggaaaagaccagtacctcaga-tttatgatccgaatactccct |
941 |
Q |
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| T |
2497411 |
gttcatccgcgactaattgtttgtttttttcttcaccaattcgaattataaaat-cggaaaagacaagcacctcagattttataatccgaatactccct |
2497314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 1413951 - 1414047
Alignment:
| Q |
289 |
ttttgttaatgaacataagttgttcttatcattagtctatgtgtctttgagtatggaatgatacaccaaaattgttttcaaagttgaggtatgtcta |
385 |
Q |
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| T |
1413951 |
ttttgttaatgaacataaaatattgtcatcattagtctatgtgccattgtgtatgaaatggtacaccaaaactgtttacaaagttgaattatgtcta |
1414047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 18917719 - 18917798
Alignment:
| Q |
280 |
attttcatgttttgttaatgaacataagttg--ttcttatcattagtctatgtgtctttgagtatggaatgatacaccaa |
357 |
Q |
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| T |
18917719 |
attttcatgttgtgttaatgagtacaaattgtttttttattattagtctatgtgtctttgtgtatggaacgatacaccaa |
18917798 |
T |
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