View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4855-Insertion-4 (Length: 653)
Name: NF4855-Insertion-4
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855-Insertion-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 337 - 626
Target Start/End: Complemental strand, 659776 - 659491
Alignment:
| Q |
337 |
catttttattagttgaactcttgctatgaaatgtgnnnnnnnnnnnnngtctcgttttatttatttagttctcatcaatctctctaatttgccattacaa |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
659776 |
catttttattagttgaactcttgctatgaaatgtgttttttttt----gtctcgttttatttatttagttctcatcaatctctctaatttgccattacaa |
659681 |
T |
|
| Q |
437 |
agttggcaatttctagtttgtagaacactctttcttctatcattttgcatatctcatgcatataccatgaccaagtgatccgatgaatgaaatattcttc |
536 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
659680 |
agttggcaatttctagtttgtagaatactctttcttctatcattttgcatatctcatgcatataccatgaccaagtgatccgatgaatgaaatattcttc |
659581 |
T |
|
| Q |
537 |
atttttagaaacattattggtatttggtaggagcaatgtttcatccaaaacacacgaagagagcatattattggaccaatcgaaatactg |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
659580 |
atttttagaaacattattggtatttggtaggagcaatgtttcatccaaaacacacgaagagagcatattattggaccaatcgaaatactg |
659491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 37575632 - 37575584
Alignment:
| Q |
50 |
gatgtttataaaaatgaaatgttatagaaagttggtggctcattttgtt |
98 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
37575632 |
gatgtttttaaaaatgaaatgttagaagaagttggtggcttattttgtt |
37575584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 49396785 - 49396741
Alignment:
| Q |
50 |
gatgtttataaaaatgaaatgttatagaaagttggtggctcattt |
94 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
49396785 |
gatgtttataagaatgaaatgttagagaaagttggtggctcattt |
49396741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 30685073 - 30685029
Alignment:
| Q |
157 |
ccaaataaaactactaaaactgttattttgagttaaataatacat |
201 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
30685073 |
ccaaataaaattattaaaactgttattttaggttaaataatacat |
30685029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 5476261 - 5476214
Alignment:
| Q |
158 |
caaataaaactactaaaactgttattttgagttaaataatacatagtt |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
5476261 |
caaataaaactactaaaactattattttgagtgaaatattacatagtt |
5476214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 5006770 - 5006741
Alignment:
| Q |
158 |
caaataaaactactaaaactgttattttga |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5006770 |
caaataaaactactaaaactgttattttga |
5006741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 4065954 - 4065879
Alignment:
| Q |
32 |
aatttcttttacata--aaggatgtttataaaaatgaaatgttatagaaagttggtggctcattttgttctaatta |
105 |
Q |
| |
|
||||| ||||||||| || ||||||||||| ||||||||||| | |||||| |||||| ||||||||||||||| |
|
|
| T |
4065954 |
aattttttttacatacaaaagatgtttataagaatgaaatgttgaaaaaagtttgtggcttattttgttctaatta |
4065879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University