View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4855_high_1 (Length: 549)

Name: NF4855_high_1
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4855_high_1
NF4855_high_1
[»] chr3 (9 HSPs)
chr3 (193-549)||(43616161-43616517)
chr3 (276-438)||(43609698-43609861)
chr3 (276-446)||(43603290-43603461)
chr3 (22-124)||(29438272-29438374)
chr3 (22-124)||(43615710-43615812)
chr3 (195-265)||(42914485-42914555)
chr3 (153-191)||(29438417-29438455)
chr3 (153-193)||(43615840-43615880)
chr3 (193-264)||(29313137-29313208)
[»] chr7 (8 HSPs)
chr7 (22-115)||(19362418-19362511)
chr7 (23-124)||(44598462-44598563)
chr7 (29-119)||(47967521-47967611)
chr7 (27-78)||(9698331-9698382)
chr7 (153-194)||(31642754-31642795)
chr7 (153-193)||(44598579-44598619)
chr7 (156-193)||(9698211-9698248)
chr7 (193-236)||(23705386-23705429)
[»] chr1 (8 HSPs)
chr1 (22-111)||(52453923-52454012)
chr1 (23-118)||(170892-170987)
chr1 (22-114)||(4808364-4808456)
chr1 (24-78)||(28702407-28702461)
chr1 (156-193)||(171039-171076)
chr1 (153-193)||(52453836-52453876)
chr1 (193-264)||(46906000-46906071)
chr1 (208-241)||(26673786-26673819)
[»] chr6 (3 HSPs)
chr6 (22-101)||(14533497-14533576)
chr6 (153-193)||(14533644-14533684)
chr6 (22-78)||(20613247-20613303)
[»] chr2 (6 HSPs)
chr2 (193-264)||(32532765-32532836)
chr2 (33-110)||(17623420-17623497)
chr2 (20-118)||(14735690-14735788)
chr2 (22-85)||(5887876-5887939)
chr2 (22-85)||(17303255-17303318)
chr2 (193-241)||(12287972-12288020)
[»] chr5 (7 HSPs)
chr5 (193-264)||(4870217-4870288)
chr5 (193-264)||(3631947-3632018)
chr5 (22-113)||(15974121-15974212)
chr5 (193-235)||(13106135-13106177)
chr5 (22-78)||(18768380-18768436)
chr5 (193-264)||(2977233-2977304)
chr5 (193-235)||(13036145-13036187)
[»] chr8 (3 HSPs)
chr8 (23-76)||(27084472-27084525)
chr8 (193-265)||(33285070-33285142)
chr8 (153-193)||(25430942-25430982)
[»] chr4 (6 HSPs)
chr4 (27-78)||(13564708-13564759)
chr4 (22-128)||(26494420-26494525)
chr4 (156-193)||(13564588-13564625)
chr4 (25-113)||(31523046-31523134)
chr4 (51-117)||(46852108-46852174)
chr4 (22-71)||(29096119-29096168)
[»] scaffold0060 (1 HSPs)
scaffold0060 (29-78)||(35686-35735)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 193 - 549
Target Start/End: Original strand, 43616161 - 43616517
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaatcgggtcaatgatcctactttgttgttt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43616161 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaagaattgagaggaccttgaattaatcgggtctatgatcctactttgttgttt 43616260  T
Q  293 ttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactgtcttccggcttcaacat 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616261 ttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactgtcttccggcttcaacat 43616360  T
Q  393 tcttctttgctgttatgctcaggtaaattttggaaaaccacattaattttcatctaagcttcattacagaaaagtaatataaaaattttattcgtaaaga 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616361 tcttctttgctgttatgctcaggtaaattttggaaaaccacattaattttcatctaagcttcattacagaaaagtaatataaaaattttattcgtaaaga 43616460  T
Q  493 gaatgttgattacatgaaggaatactgtaagacttatatagctaatgttgatatgag 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616461 gaatgttgattacatgaaggaatactgtaagacttatatagctaatgttgatatgag 43616517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 276 - 438
Target Start/End: Original strand, 43609698 - 43609861
Alignment:
Q  276 atcctactttgttg-tttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaact 374  Q
    ||||||||| |||| ||||||||| ||||||||||| |||||||| ||||| |||||||| |||| || ||||||||| || ||| |||||||||||| |    
T  43609698 atcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgctatgctgtctggtgcaattgttaatt 43609797  T
Q  375 gtcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaaccacattaa 438  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  43609798 gtcttccggcttcgacattcttctttgctgttctgctcaggtaaatttttgaaaaccacattaa 43609861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 276 - 446
Target Start/End: Original strand, 43603290 - 43603461
Alignment:
Q  276 atcctactttgttgtttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactg 375  Q
    ||||| ||| |||| ||||||||||||||||| || |||||||| |||||||||| |||| |||||| ||||||  |||||||||||| |||||||| ||    
T  43603290 atccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattg 43603389  T
Q  376 tcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaa-ccacattaattttcatc 446  Q
     ||||| ||||  |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  43603390 ccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatcaacattaattttcatc 43603461  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 29438272 - 29438374
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtaccat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||    
T  29438272 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataatatcaatttgaattgagctggtgcagtggaaagggggtaccat 29438371  T
Q  122 gaa 124  Q
    |||    
T  29438372 gaa 29438374  T

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Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 43615710 - 43615812
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtaccat 121  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  43615710 caggcaggtgtcatgttatcccctaaagtttccttatatactatattaggagtataacatcaatctgaattgagttgctgcagtggaaagggggtaccat 43615809  T
Q  122 gaa 124  Q
    |||    
T  43615810 gaa 43615812  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 42914555 - 42914485
Alignment:
Q  195 taaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaat 265  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||  |||  ||||| |||||||||||    
T  42914555 taaggagatcattgatatttctaatgatagttgcataaacatgtcaagcattaggaggagcttgaattaat 42914485  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 29438417 - 29438455
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaa 191  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  29438417 acttgtttaatcttctattattgcatattgtatttaaaa 29438455  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 43615840 - 43615880
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  43615840 acttgtttaatcttctattattcaatatcgtatttaaaaaa 43615880  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 29313208 - 29313137
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| || |||||||| |||||||| ||||||||||| |||  ||| || ||| ||||||||||    
T  29313208 attaaggagatccttaatatttctgatgatagtggcataaacatgtcaagcattaaggggagcttgaattaa 29313137  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 19362418 - 19362511
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaaggggg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||    
T  19362418 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataatatcaatctgaattgagctgctgcagtggaaaggggg 19362511  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 44598462 - 44598563
Alignment:
Q  23 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtaccatg 122  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||| ||    
T  44598462 aggcaggtgtcatggtatcccccaaagtttccttatatactatattaggagtataatattaatttgaattgagctgctgcagtggaaagggggtaccgtg 44598561  T
Q  123 aa 124  Q
    ||    
T  44598562 aa 44598563  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 47967611 - 47967521
Alignment:
Q  29 gtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtacc 119  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||| | ||||||| ||||  |||||||||||||||||    
T  47967611 gtgccatggtatccctcaaaatttccttatatattatattaggagtataacataaatctaaattgagctgctccagtggaaagggggtacc 47967521  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 9698382 - 9698331
Alignment:
Q  27 aggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 78  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9698382 aggtgccatggtatcctccaaagtttccttatatactatattaagagtataa 9698331  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 31642754 - 31642795
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaat 194  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  31642754 acttgtttaatcttctattattgcatattgtatttaaaaaat 31642795  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 44598579 - 44598619
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  44598579 acttgtttaatcttctattattgcatattgtatttaaaaaa 44598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 9698248 - 9698211
Alignment:
Q  156 tgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9698248 tgtttaatcttctattattgcatattgtatttaaaaaa 9698211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 23705386 - 23705429
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacat 236  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||    
T  23705386 attaaagagatcattgatatttctattgatagttgcataaacat 23705429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 52454012 - 52453923
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaag 111  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  52454012 caggcaagtgtcatggtatcccccaaagtttccttatatactatattaggagtataatatcaatttgaattgagctgctgcagtggaaag 52453923  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 170892 - 170987
Alignment:
Q  23 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtac 118  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| || |||||| |||||||||    
T  170892 aggcaggtgccatgatatcccccaaagtttccttatatagtatattaggagtataataacaactagaattgagttgttgcagtggagagggggtac 170987  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 4808364 - 4808456
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggg 114  Q
    |||||||||| | |||||||| ||||||||||||||||||| ||||||| ||||||  | ||| | ||||||| |||||||||||||||||||    
T  4808364 caggcaggtgtcgtggtatcctccaaagtttccttatataccatattagaagtatattaacaactagaattgatttgctgtagtggaaagggg 4808456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 28702461 - 28702407
Alignment:
Q  24 ggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 78  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28702461 ggcaggtgacatggtatccctcaaagtttccttatatactatattaagagtataa 28702407  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 171039 - 171076
Alignment:
Q  156 tgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  171039 tgtttaatcttctattattgcatattgtatttaaaaaa 171076  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 52453876 - 52453836
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  52453876 acttgtttaatcttctattatagcatattgtatttaaaaaa 52453836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 46906071 - 46906000
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| || | |||||| ||| |||| ||||||||||||||| ||||||| ||  ||||||||||    
T  46906071 attaaggagatccttaacatttctgatggtagtggcataaacatgccaagaattgaggggggcttgaattaa 46906000  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 26673819 - 26673786
Alignment:
Q  208 gatatttctaatgatagttgcataaacatgccaa 241  Q
    ||||||||||||| ||||||||||||||||||||    
T  26673819 gatatttctaatgttagttgcataaacatgccaa 26673786  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 14533497 - 14533576
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctg 101  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||    
T  14533497 caggcaggtgccatggtatcccccaaagtttcctgatatactatattaggagtataacatcaatataaattgagctgctg 14533576  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 14533644 - 14533684
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  14533644 acttgtttaatcttctattgttgcatattgtatttaaaaaa 14533684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 20613303 - 20613247
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 78  Q
    |||| ||||||||||| |||||||| | || ||||||||||||||||||| ||||||    
T  20613303 caggtaggtgccatggcatcccccagatttcccttatatactatattaggtgtataa 20613247  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 32532765 - 32532836
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  32532765 attaaggagatcattgatatttctaatgatagttgcataaacatgccaagagttgagaggagcttgaattaa 32532836  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 17623497 - 17623420
Alignment:
Q  33 catggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaa 110  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | |||   |||||||| ||||| ||||||||    
T  17623497 catggtatcccccaaagtttccttatatactatattagaagtataataacaaccagaattgagctgctgcagtggaaa 17623420  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 14735788 - 14735690
Alignment:
Q  20 atcaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtac 118  Q
    ||||| |||| ||||||| || ||||| | ||| |||||||||||||||||| |||| | ||||||| |||||  |||| ||| ||||||| |||||||    
T  14735788 atcagacaggggccatggcattccccagatttttcttatatactatattaggtgtattatatcaattagaatttggttgttgttgtggaaatggggtac 14735690  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 5887876 - 5887939
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaat 85  Q
    |||| ||||||||||| |||||||| | || |||||||||||| |||||| |||||| ||||||    
T  5887876 caggtaggtgccatggcatcccccagatttcccttatatactacattaggtgtataatatcaat 5887939  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 17303318 - 17303255
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaat 85  Q
    ||||||||||  |||| |||||||| | || ||||||||||||||||||| |||||| ||||||    
T  17303318 caggcaggtgttatggcatcccccagatttcccttatatactatattaggtgtataatatcaat 17303255  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 12287972 - 12288020
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaa 241  Q
    |||||||||||| |  | ||||||||||||||| |||||||||||||||    
T  12287972 attaaggagatcttcaacatttctaatgatagtggcataaacatgccaa 12288020  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 4870217 - 4870288
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  4870217 attaaggagattgttgatatttctaatgatagttgcataaacatgtcaagcattgagaggagcttgaattaa 4870288  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 3631947 - 3632018
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  3631947 attaaggagatcgttgatgtttctaatgatagttgcataaacatgtcaaacattgagaggggcttgaattaa 3632018  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 15974212 - 15974121
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaaggg 113  Q
    |||||||||||||||| |||||| | | |||||||||||||||||||||| |||| |  |||||   |||| ||||| |||||||| |||||    
T  15974212 caggcaggtgccatggcatcccctagattttccttatatactatattaggtgtatgatttcaataacaatttagttgttgtagtggtaaggg 15974121  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 13106135 - 13106177
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaaca 235  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  13106135 attaaggagatcgttaatatttctaatgataattgcataaaca 13106177  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 18768436 - 18768380
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 78  Q
    |||||||||||||||| ||||||||   || ||||||||||||||||||| ||||||    
T  18768436 caggcaggtgccatggcatcccccaggtttcccttatatactatattaggtgtataa 18768380  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 2977304 - 2977233
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| |||| |||| | | |||||| ||||||| |||||||  |||||||||| ||||||||||    
T  2977304 attaaggagatccttgacattttttacgatagtggcataaaaatgccaagcattgagaggaacttgaattaa 2977233  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 13036145 - 13036187
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaaca 235  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  13036145 attaaggagatcgttaatatttttaatgatagttgtataaaca 13036187  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 27084525 - 27084472
Alignment:
Q  23 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtat 76  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27084525 aggcaggtgccatggcatcccccaaagtttccttatatactatattaggtgtat 27084472  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 33285142 - 33285070
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaat 265  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||  |||| ||||| ||| |||||||    
T  33285142 attaagcagatcgttgatatttctaatgatagttgcataaacatgtcaagcattgggaggagcttaaattaat 33285070  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 25430942 - 25430982
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  25430942 acttgtttaatcttctattattgcatattgtattaaaaaaa 25430982  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 13564759 - 13564708
Alignment:
Q  27 aggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 78  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  13564759 aggtgccatggtatcctccaaagtttccttatatactatattaagagtataa 13564708  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 26494420 - 26494525
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtaccat 121  Q
    |||||||||||||||  |||||||| | || ||||||||||||||||||| ||||||  |||||   |||| ||||| || ||||| || ||||| ||||    
T  26494420 caggcaggtgccatgacatcccccagatttcccttatatactatattaggtgtataatttcaataataatttagttgttgcagtggtaa-ggggtgccat 26494518  T
Q  122 gaactgg 128  Q
    |||||||    
T  26494519 gaactgg 26494525  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 13564625 - 13564588
Alignment:
Q  156 tgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13564625 tgtttaatcttctattattgcatattgtatttaaaaaa 13564588  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 31523046 - 31523134
Alignment:
Q  25 gcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaaggg 113  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||||||| |||| ||| ||| | ||||| || | ||| ||||| |||||    
T  31523046 gcaggtgtcatggcatcccccaaagtttccttatatattgtattaggtgtattacaacaactagaattcagctactgcagtggtaaggg 31523134  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 46852174 - 46852108
Alignment:
Q  51 ttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggta 117  Q
    ||||||||||| ||||||||| |||| | | ||||| ||||| |||||||| |||||||||| ||||    
T  46852174 ttccttatatattatattaggtgtattataacaattagaattcagttgctgcagtggaaaggcggta 46852108  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 29096119 - 29096168
Alignment:
Q  22 caggcaggtgccatggtatcccccaaagtttccttatatactatattagg 71  Q
    |||||||||||||||| |||||||| | || |||||| ||||||||||||    
T  29096119 caggcaggtgccatggcatcccccagatttcccttatttactatattagg 29096168  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 35686 - 35735
Alignment:
Q  29 gtgccatggtatcccccaaagtttccttatatactatattaggagtataa 78  Q
    ||||||||| |||||||| | || ||||||||||||||||||| ||||||    
T  35686 gtgccatggcatcccccagatttcccttatatactatattaggtgtataa 35735  T

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