View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855_high_10 (Length: 320)
Name: NF4855_high_10
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 45506572 - 45506757
Alignment:
| Q |
135 |
tgtgtaacaaaatgaagaaaacaagtgattatgtgaagaaaaagaaaatgctctnnnnnnntattcataatttaaattctttacaagtaataggcatgtt |
234 |
Q |
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| T |
45506572 |
tgtgtaacaaaatgaagaaaacaagtgattatgtgaagaaaaagaaaatgctctaaaaaaatattcataatttaaattctttacaagtaataggcatgtt |
45506671 |
T |
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| Q |
235 |
caaaaagtttaaaagaccgagcttaattaaccatgaatcaaaatgaattgagtattgttgttgtacttgaaagatacctcatgaat |
320 |
Q |
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| T |
45506672 |
caaaaagtttaaaagaccgagcttaattaaccatgaatcaaaatgaattgagtattgttgttgtacttgaaacttacctcatgaat |
45506757 |
T |
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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50813395 - 50813338
Alignment:
| Q |
1 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
58 |
Q |
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| T |
50813395 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
50813338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50862469 - 50862526
Alignment:
| Q |
1 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
58 |
Q |
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| T |
50862469 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
50862526 |
T |
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