View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855_high_12 (Length: 307)
Name: NF4855_high_12
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 302
Target Start/End: Original strand, 17486071 - 17486346
Alignment:
| Q |
27 |
gatattatttaagaaaataatgacattcaacgtaaattatcaaactagccaaacttaattaactacacataagaaacattagggataattctgtcaaaat |
126 |
Q |
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| T |
17486071 |
gatattatttaagaaaatactaacattcaacgtaaattatcaaactagccaaacttaattaactacacataagcaacattagagataattctgtcaaaat |
17486170 |
T |
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| Q |
127 |
aattcaattatagctaaacgtcttgtttttgttccataaaatcttattcttatttgaattcttgaagcttcttgcaacaaacatcttttannnnnnnctc |
226 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17486171 |
aatttaattatagctaaacgtcttgtttttgttccataaaatcttattcttatttgaattcttgaagcttcttgcaacaaacatcttttatttttttctc |
17486270 |
T |
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| Q |
227 |
ctctaagatctgttggatcatatgctattattcttatctatcgagtcacccgtcatttatattcaaacaccaaact |
302 |
Q |
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||||||||||||||||| ||||| |||||||| || |||||||| |||| | |||||||||||||| || |||||| |
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| T |
17486271 |
ctctaagatctgttggaccatatcctattatttttgtctatcgaatcactcatcatttatattcaagcatcaaact |
17486346 |
T |
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