View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4855_high_2 (Length: 520)

Name: NF4855_high_2
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4855_high_2
NF4855_high_2
[»] chr2 (1 HSPs)
chr2 (1-520)||(33632510-33633029)
[»] chr8 (2 HSPs)
chr8 (1-520)||(29192927-29193438)
chr8 (64-227)||(29182893-29183063)


Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 33633029 - 33632510
Alignment:
Q  1 cactaccttgttcagacatagtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacac 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33633029 cactaccttgttcagacatagtatgataattgtgatgctactttttcttttttgcagattcaaaagtttgctatgaggtttccatcaatctatgaaacac 33632930  T
Q  101 aatcattcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttataaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33632929 aatcattcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaacaaggggttgcaatttcttcacttataaa 33632830  T
Q  201 accatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33632829 accatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttc 33632730  T
Q  301 agaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33632729 agaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtaattggttagattttgttggagtactggaa 33632630  T
Q  401 ggatgtgaatctgatatattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttcatcctgtc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33632629 ggatgtgaatctgatatattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttcatcctgtc 33632530  T
Q  501 ttttcttcctacttttatgc 520  Q
    ||||||||||||||||||||    
T  33632529 ttttcttcctacttttatgc 33632510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 29192927 - 29193438
Alignment:
Q  1 cactaccttgttcagacatagtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacac 100  Q
    |||| |||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29192927 cactgccttattcagacatattatgataattgtgatgctactttt-ctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacac 29193025  T
Q  101 aatcattcattggtgctttgaaggtaaaagatgcttatcatagtaa--taaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttata 198  Q
    ||||||||||  ||||||||||||||||||||||||| |||| |||  ||||||||||||||||    ||||||||| ||||||| || |   |||||||    
T  29193026 aatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaaa----tagaaccagcggttgcacttgc---acttata 29193118  T
Q  199 aaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggt 298  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  29193119 aaaccatagtctttgcttgttgattttttctgattgtgttccttcccaggagatcctgaaagatgacaaggagccggaacctttaaatattgactttggt 29193218  T
Q  299 tcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactgg 398  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| |||    
T  29193219 tcagaaatttcgtctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaag----ttgtcattggttagattttgttggagtaatgg 29193314  T
Q  399 aaggatgtgaatctgatatattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttcatcc-- 496  Q
     ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||      
T  29193315 gaggatgtgaatatgatatattgaccatttatttaattgtcattcagtttctattttttatacactaccattcactgacctgttttctgttttcatcctt 29193414  T
Q  497 tgtcttttcttcctacttttatgc 520  Q
    ||||||||| ||||||| ||||||    
T  29193415 tgtcttttcctcctactcttatgc 29193438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 29182893 - 29183063
Alignment:
Q  64 aagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagt--aataaatcacaactaaa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| |  |||||||||||||||||    
T  29182893 aagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaa 29182992  T
Q  162 aactatagaaccaggggttgcaatttc---------ttcacttataaaaccatagtatttgcttgttgatttttt 227  Q
        |||||||||| ||||||| || |         | |||||||||||||||||| ||||||||||||||||||    
T  29182993 ----atagaaccagcggttgcacttgcacttgcacttgcacttataaaaccatagtctttgcttgttgatttttt 29183063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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