View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855_high_4 (Length: 353)
Name: NF4855_high_4
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855_high_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 36938967 - 36938625
Alignment:
| Q |
11 |
ttatactcgtctttgaaatcattagctgcgtgtgctaattctgcatatgaatacttcctaggtcctgccccccttccaaaatcctctcccatgtactctt |
110 |
Q |
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| T |
36938967 |
ttatactcgtctttgaaatcattagctgcgtgtgctaattctgcatatgtatacttcctaggtcctgccccccttccaaaatcctctcccatgtactctt |
36938868 |
T |
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| Q |
111 |
caaattcaccatcttcctcttcactttctttcttccacttcttccacaacacaatggaaaaaagacccaatacaccaatcaaaacaaatccaccaattcc |
210 |
Q |
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| T |
36938867 |
caaattcaccatcttcctcttcactttctttcttccacttcttccacaacacaatggaaaaaagacccaatacaccaatcaaaacaaatccaccaattcc |
36938768 |
T |
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| Q |
211 |
taatcccactgctagtcccataacaagtcctgtttttccttcgtctttgtgtgcttcaaaatctaaactagagttgaaggaccatgacctaagagtatgt |
310 |
Q |
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| T |
36938767 |
taatcccactgctagtcccataacaagtcctgtttttccttcgtctttgtgtgcttcaaaatctaaactagagttgaaggaccatgacctaagagtatgt |
36938668 |
T |
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| Q |
311 |
tcctccccccaaaacaaccctgttgctgaagtgaagccaaatt |
353 |
Q |
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| T |
36938667 |
tcctccccccaaaacaaccctgttgctgaagtgaagccaaatt |
36938625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 36942151 - 36942268
Alignment:
| Q |
11 |
ttatactcgtctttgaaatcattagctgcgtgtgctaattctgcatatgaatacttcctaggtcctgccccccttccaaaatcctctcccatgtactctt |
110 |
Q |
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| T |
36942151 |
ttatgctcatctttgaaattattagctgcatttgctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactctt |
36942250 |
T |
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| Q |
111 |
caaattcaccatcttcct |
128 |
Q |
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| T |
36942251 |
gaaattcaccatcttcct |
36942268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 353
Target Start/End: Complemental strand, 36948995 - 36948869
Alignment:
| Q |
224 |
agtcccataacaagtcctgtttttccttcgtctttgtgtgcttcaaaatctaaactagagttgaaggaccatgacctaagagtatgttcctccccccaaa |
323 |
Q |
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| T |
36948995 |
agtcctataacaagtcctgtttttgttccatctttttttgcttcaaaatctagacttgagttgaatgaccatgagttaagagtatgatact---cccaga |
36948899 |
T |
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| Q |
324 |
acaaccctgttgctgaagtgaagccaaatt |
353 |
Q |
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| T |
36948898 |
aaaatcctgttgcagaagtgaatccaaatt |
36948869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 353
Target Start/End: Complemental strand, 36959129 - 36959003
Alignment:
| Q |
224 |
agtcccataacaagtcctgtttttccttcgtctttgtgtgcttcaaaatctaaactagagttgaaggaccatgacctaagagtatgttcctccccccaaa |
323 |
Q |
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||||| ||||| |||||||||||| | | |||| | |||||||||||||||||| |||||||| |||||||| ||||||||||| | || |||||| |
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| T |
36959129 |
agtcctataactagtcctgtttttgttccatcttcttttgcttcaaaatctaaacttgagttgaatgaccatgagctaagagtatgatact---cccaaa |
36959033 |
T |
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| Q |
324 |
acaaccctgttgctgaagtgaagccaaatt |
353 |
Q |
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| T |
36959032 |
aagttcctgttgctgaagtgaatccaaatt |
36959003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 36942306 - 36942359
Alignment:
| Q |
175 |
acccaatacaccaatcaaaacaaatccaccaattcctaatcccactgctagtcc |
228 |
Q |
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||| ||||||||||| | |||||||||||| |||| ||||||||||||||||| |
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| T |
36942306 |
accaaatacaccaatgagaacaaatccaccggttcccaatcccactgctagtcc |
36942359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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