View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4855_high_7 (Length: 344)
Name: NF4855_high_7
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 117 - 320
Target Start/End: Complemental strand, 28136517 - 28136311
Alignment:
| Q |
117 |
cagtgttcccctcatgtatgatttcactctttttt-gtagtcaaattatatttgcaag--tttattttcaatcgtgtaggtttagtgaaaaaattcaata |
213 |
Q |
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| T |
28136517 |
cagtgttcccctaatgtatgatttcactctttttttgtagtcaaattatatttgcaagagtttattttcaatcgtctaggttcagtgacaaaattcaaca |
28136418 |
T |
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| Q |
214 |
attcagtcttgaatagtgttgacgaatagcaccaccattgtgtagtagaatttgttggaatcatgtttctttcttacttggttgaattagttttttagtg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28136417 |
attcagtcttgaatagtgttgacgaatagcaccaccattgtgtagtagaatttgttggaatcttgtttctttcttacttggttgaattagttttttagtg |
28136318 |
T |
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| Q |
314 |
ttgatga |
320 |
Q |
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||||||| |
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| T |
28136317 |
ttgatga |
28136311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 44806139 - 44806263
Alignment:
| Q |
145 |
cttttttgtagtcaaattatatttgcaag--tttattttcaatcgtgtaggtttagtgaaaaaattcaataattcagtcttgaatagtgttgacgaatag |
242 |
Q |
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| T |
44806139 |
cttttttgtagtcaaattctacttgcaagagtttattttcaatcgtctaggtttagtgacaaaattcaacaattcagtcttgaacagtgttgacgaatag |
44806238 |
T |
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| Q |
243 |
caccaccattgtgtagtagaatttg |
267 |
Q |
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| | |||| ||||||||||||||| |
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| T |
44806239 |
cggcgccatcgtgtagtagaatttg |
44806263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 44806481 - 44806523
Alignment:
| Q |
273 |
atcatgtttctttcttacttggttgaattagttttttagtgtt |
315 |
Q |
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| T |
44806481 |
atcatgtttctttcttacttggttgaattagttttttagtgtt |
44806523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50813395 - 50813338
Alignment:
| Q |
1 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50813395 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
50813338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50862469 - 50862526
Alignment:
| Q |
1 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50862469 |
cacagttattataatctaacttgagaattataatctcctattgacagcaaaactacac |
50862526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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