View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4855_high_8 (Length: 342)
Name: NF4855_high_8
Description: NF4855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4855_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 43616707 - 43617043
Alignment:
| Q |
1 |
caacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttgtggctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43616707 |
caacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttgtggctt |
43616806 |
T |
|
| Q |
101 |
gtacttcaggtaccattaatttaatttcaatttgcggtataagggctagaatgatgaaaacatttgtgttacattatgaattctctgcgttatcgataan |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
43616807 |
gtacttcaggtaccattaatttaatttcaatttgtggtataaggtctagaatgatgaaaacatttgtgttacattatgaattctctgcgtcatggataat |
43616906 |
T |
|
| Q |
201 |
nnnnnnaacaaaatttagtgaacagaaaaataattattaattgaagtgagagtaatgacaattttacaacatgaaatttgaatttcttttcctaaaggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43616907 |
ttttttaacaaaatttagtgaacagaaaaataattattaattgaagtgagagtaatgacaattttacaacatgaaatttgaatttcttttcctaaaggtt |
43617006 |
T |
|
| Q |
301 |
acaatgtcaaattctcacaactaagctaacaccaaac |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43617007 |
acaatgtcaaattctcacaactaagctaacaccaaac |
43617043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 43610082 - 43610206
Alignment:
| Q |
1 |
caacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttgtggctt |
100 |
Q |
| |
|
|||| ||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| |||||| || |
|
|
| T |
43610082 |
caactatcaacaacatgaagatagtgaatcatatgacaaaaaatggattttgggttctttactcttgttcctaactaccattacctggagtttgtggatt |
43610181 |
T |
|
| Q |
101 |
gtacttcaggtaccattaatttaatt |
126 |
Q |
| |
|
|||||||||||| || |||||||||| |
|
|
| T |
43610182 |
gtacttcaggtagca-taatttaatt |
43610206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 43603697 - 43603798
Alignment:
| Q |
25 |
tgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtggagcttgtggcttgtacttcaggtaccattaatttaa |
124 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||| |||||||||| |||||| ||||| |||||||||| || |||||| |
|
|
| T |
43603697 |
tgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtggagtttgtggattgtatttcaggtaccgtttatttaa |
43603796 |
T |
|
| Q |
125 |
tt |
126 |
Q |
| |
|
|| |
|
|
| T |
43603797 |
tt |
43603798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University