View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4856-Insertion-6 (Length: 774)

Name: NF4856-Insertion-6
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4856-Insertion-6
NF4856-Insertion-6
[»] chr7 (8 HSPs)
chr7 (360-706)||(14241108-14241453)
chr7 (153-257)||(14241561-14241664)
chr7 (273-343)||(14241439-14241513)
chr7 (439-638)||(17263274-17263468)
chr7 (442-532)||(42453622-42453712)
chr7 (442-531)||(6459080-6459168)
chr7 (442-531)||(41242166-41242255)
chr7 (591-638)||(43656000-43656047)
[»] scaffold0074 (1 HSPs)
scaffold0074 (442-638)||(36045-36241)
[»] chr4 (6 HSPs)
chr4 (442-596)||(28740752-28740906)
chr4 (442-558)||(13159702-13159818)
chr4 (442-532)||(46191198-46191288)
chr4 (442-533)||(20177381-20177472)
chr4 (442-533)||(44546611-44546702)
chr4 (580-637)||(22322554-22322611)
[»] chr8 (2 HSPs)
chr8 (442-638)||(15172688-15172889)
chr8 (442-533)||(17936325-17936416)
[»] chr1 (5 HSPs)
chr1 (442-533)||(10349520-10349611)
chr1 (442-533)||(39581404-39581496)
chr1 (598-638)||(8303913-8303953)
chr1 (442-492)||(20819606-20819656)
chr1 (601-638)||(33567311-33567348)
[»] chr5 (2 HSPs)
chr5 (442-638)||(23257044-23257239)
chr5 (442-533)||(37268316-37268407)
[»] chr2 (5 HSPs)
chr2 (442-544)||(17607624-17607726)
chr2 (442-531)||(45701191-45701280)
chr2 (442-546)||(12915728-12915832)
chr2 (442-529)||(2220100-2220187)
chr2 (573-638)||(22858803-22858868)
[»] chr6 (5 HSPs)
chr6 (442-638)||(14781986-14782183)
chr6 (442-532)||(25186766-25186856)
chr6 (588-637)||(9756363-9756412)
chr6 (580-637)||(31848191-31848248)
chr6 (591-638)||(29361530-29361577)
[»] chr3 (4 HSPs)
chr3 (442-546)||(7638888-7638992)
chr3 (454-529)||(30188542-30188617)
chr3 (499-532)||(7676830-7676863)
chr3 (591-637)||(19667633-19667679)
[»] scaffold1251 (1 HSPs)
scaffold1251 (439-492)||(858-911)
[»] scaffold0461 (2 HSPs)
scaffold0461 (601-638)||(2082-2119)
scaffold0461 (601-638)||(9018-9055)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 360 - 706
Target Start/End: Complemental strand, 14241453 - 14241108
Alignment:
Q  360 aatcgttaagaaatctatgcatacttgaatatattaatctattttaccattccctcctcaaagtttatggnnnnnnnnnaataaatcaaaatgaaatata 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||||||    
T  14241453 aatcgttaagaaatctatgcatacttgaatatattaatctattttaccattccctcctcaaggtttatggtttttttttaataaatcaaaatgaaatata 14241354  T
Q  460 ttgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggcacctaataagaggttgct 559  Q
    |||||||||||||||| ||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  14241353 ttgctaaaacgaaaagtgattcaccccgcacaagatgtgctaaaagtgatgaatcacacaatatctgttacaaagtcatgacacctaataagaggttgcc 14241254  T
Q  560 gccaccgaaaaagaaataacaaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaatttatttccttctaaaagtat 659  Q
     |||||||||||||||||||||||||| ||  ||| | || |||  ||||| |||||||||| ||||||||||||||||||||||||||||   |||||     
T  14241253 accaccgaaaaagaaataacaaaattacat-gcactcatacaaaaaagtggatgtctccaccaatcatgaaaaccaaaatttatttccttccttaagtac 14241155  T
Q  660 ggttcctctttaactaattcaccctaattttattacctgaaattcac 706  Q
    |||||||||||||||||||||||||||||||||| || |||||||||    
T  14241154 ggttcctctttaactaattcaccctaattttatttcccgaaattcac 14241108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 14241664 - 14241561
Alignment:
Q  153 ccattattcacaaaagactgatacttaaagaaactaaaattcaagcatcacgtaaagttgataaaagaaccaaattcaagtgttgaaacaagataaaata 252  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  14241664 ccattattcacaaaagactcatacttaaagaaactaaa-ttcaagcgtcacttaaagttgataaaagaaccaaattcaagtgttgaaaaaagataaaata 14241566  T
Q  253 gctta 257  Q
     ||||    
T  14241565 cctta 14241561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 14241513 - 14241439
Alignment:
Q  273 acacaaatattactaagaaaaatacata----tgcaactcaataactcgaaattccgaagaatcgttaagaaatc 343  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  14241513 acacaaatattactaagaaaaatacatacatatgcaactcaataactcgaaattccgaagaatcgttaagaaatc 14241439  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 439 - 638
Target Start/End: Complemental strand, 17263468 - 17263274
Alignment:
Q  439 aataaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcat 538  Q
    |||||||||||||| ||||||||| | || ||||||| ||||||||||| ||||  |  |||||||| |||||||||| ||||||||||||||| | ||     
T  17263468 aataaatcaaaatggaatatattgttcaa-cgaaaagtgattcaccctgtacaaggtgtgctaaaagagatgaatcacccaatatctgttacaaggacac 17263370  T
Q  539 ggcacctaataagaggttgctgccaccgaaaaagaaataacaaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    | | ||||| |||||  ||| |||| ||   || ||||   ||||||| || ||| || |||||||||||||||||||||||| |||||| |||||||||    
T  17263369 gacccctaaaaagagagtgccgccatcggccaa-aaat---aaaattacatgacatccatataaaggagtgggtgtctccaccaatcatggaaaccaaaa 17263274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 442 - 532
Target Start/End: Complemental strand, 42453712 - 42453622
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaa 532  Q
    |||| |||||| ||||||||||| ||||||| || ||||||||| ||| ||  |  |||||||||||||||||| ||||||||||||||||    
T  42453712 aaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatcatacaatatctgttacaa 42453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 531
Target Start/End: Complemental strand, 6459168 - 6459080
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttaca 531  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||  |  |||||||| |||||||||| |||| |||| ||||    
T  6459168 aaatcaaaatgaaatatattgctcaaaagaaaagtgattcaccctgcacaa-gtgtgctaaaagcgatgaatcactcaatgtctgataca 6459080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 442 - 531
Target Start/End: Original strand, 41242166 - 41242255
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttaca 531  Q
    ||||||||||| |||||||| || |||||||||| ||||||||| ||||||  |  ||||||| |||||||||||   ||||||||||||    
T  41242166 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaattgatgaatcactagatatctgttaca 41242255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 638
Target Start/End: Complemental strand, 43656047 - 43656000
Alignment:
Q  591 acacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    |||||| || |||||||||| |||||||||| ||||||||||||||||    
T  43656047 acacccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaa 43656000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 442 - 638
Target Start/End: Original strand, 36045 - 36241
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||| ||||||||||  ||| ||||    ||||| || |||||| ||  |||||||||||||||||||| |||||||||||||||||||||||    
T  36045 aaatcaaaatggaatatattgcccaaatgaaatatcattcatcccgcacaagatgtgctaaaagtgatgaatcacaaaatatctgttacaaagtcatggc 36144  T
Q  542 acctaataagaggttgctgccaccgaaaaagaaataacaaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    ||| |  |||| ||||| || ||| |||||||||||||||||||| || |||||| || ||||||||| ||||||||||| ||||||||||||||||    
T  36145 accgagcaagatgttgccgcgaccaaaaaagaaataacaaaattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaaa 36241  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 442 - 596
Target Start/End: Complemental strand, 28740906 - 28740752
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||| |||||||||   |||  ||| | ||||||||| |||||| ||  || ||||||||||| ||||| ||||||||||||||||||| | |    
T  28740906 aaatcaaaatggaatatattgtctaaataaaaggtgattcacccagcacaagatgtgccaaaagtgatgattcacataatatctgttacaaagtcaagac 28740807  T
Q  542 acctaataagaggttgctgccaccgaaaaagaaataacaaaattatataacaccc 596  Q
    |||||| || ||||||| |||||| |||||||||||||||| ||| || ||||||    
T  28740806 acctaacaaaaggttgccgccaccaaaaaagaaataacaaacttacatgacaccc 28740752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 442 - 558
Target Start/End: Original strand, 13159702 - 13159818
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||| ||||||  |  |||||||||| ||||||||| ||||| |||||||||  ||  ||    
T  13159702 aaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaaagtgtgctaaaagtggtgaatcacaaaatatatgttacaaatacaaagc 13159801  T
Q  542 acctaataagaggttgc 558  Q
    |||||| || |||||||    
T  13159802 acctaacaataggttgc 13159818  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 532
Target Start/End: Original strand, 46191198 - 46191288
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaa 532  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||| ||||||| |  ||||||| |||||| ||||  ||||||||||||||    
T  46191198 aaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaatgtgtgctaaaaatgatgactcactgaatatctgttacaa 46191288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 533
Target Start/End: Original strand, 20177381 - 20177472
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaa 533  Q
    ||||||||||  ||||||||||| || ||||||| ||||||||  |||||| ||| | |||||||||||||||||| |||||||| ||||||    
T  20177381 aaatcaaaatcgaatatattgctcaatcgaaaagtgattcacctcgcacaagatatgttaaaagtgatgaatcacataatatctgatacaaa 20177472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 44546702 - 44546611
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaa 533  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||| ||||||  |  |||||||| || ||||||| |||  |||||||||||    
T  44546702 aaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaagcgacgaatcactcaaagtctgttacaaa 44546611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 22322554 - 22322611
Alignment:
Q  580 aaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaa 637  Q
    ||||||| || | |||| || ||||||||||||||||||||| ||| |||||||||||    
T  22322554 aaaattacatgatacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaa 22322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 442 - 638
Target Start/End: Complemental strand, 15172889 - 15172688
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    |||| |||||| |||||||| || ||||||| || ||||||||| | |||||||  |||||||||||||||||||| ||||||||||||| || || |||    
T  15172889 aaattaaaatggaatatatttctcaaacgaagagtgattcaccccgaacaatatgtgctaaaagtgatgaatcacataatatctgttacatagacaaggc 15172790  T
Q  542 acctaataagaggttgctgccaccgaaaaagaaataa------caaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaacca 635  Q
    |||||| ||||| |||||| | |  ||||| ||| ||       ||||||| || |||||| || ||||||||||||||||||| | ||| |||||| ||    
T  15172789 acctaa-aagagtttgctggcgcaaaaaaaaaaaaaaaacaatgaaaattacatgacacccatacaaaggagtgggtgtctccatcaatcgtgaaaaaca 15172691  T
Q  636 aaa 638  Q
    |||    
T  15172690 aaa 15172688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 17936416 - 17936325
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaa 533  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||| ||||||  |  |||||||| || ||||||| |||  |||||||||||    
T  17936416 aaatcaaaatgaaatatattgctcaaaggaaaagtgattcaccccgcacaaggtgtgctaaaagcgacgaatcactcaaagtctgttacaaa 17936325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 10349611 - 10349520
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaa 533  Q
    ||||||||||| ||||||||||| ||||  |||| ||||||||||||||||  |  |||||||||||||||||||| |||||||||||||||    
T  10349611 aaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcacaaaatatctgttacaaa 10349520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 39581496 - 39581404
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatg-aatcacacaatatctgttacaaa 533  Q
    ||||||||||   |||||||| | ||||||| || ||||||||| |||||| ||| ||||||||||||| ||||||| |||||||| ||||||    
T  39581496 aaatcaaaataggatatattgttcaaacgaatagtgattcaccccgcacaagatatgctaaaagtgatgaaatcacaaaatatctgatacaaa 39581404  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 638
Target Start/End: Original strand, 8303913 - 8303953
Alignment:
Q  598 tataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  8303913 tataaaggagtggatgtctccaccaatcatgaaaaccaaaa 8303953  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 20819606 - 20819656
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaa 492  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||| ||||||    
T  20819606 aaatcaaaatggaatatattgctcaaaagaaaagtgattcacccagcacaa 20819656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 33567311 - 33567348
Alignment:
Q  601 aaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  33567311 aaaggagtggatgtctccaccaatcatgaaaaccaaaa 33567348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 442 - 638
Target Start/End: Complemental strand, 23257239 - 23257044
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||| ||||||||| | |||||||||| ||||||||| ||||||  |  |||||||  |||||||||| ||||||||| |||| |  || |||    
T  23257239 aaatcaaaatggaatatattgttcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaaccgatgaatcacccaatatctgctacacaaacaaggc 23257140  T
Q  542 acctaataagaggttgctgccaccgaaaaagaaataacaaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    ||| ||  | ||| |||  ||||| ||||| ||| || ||||||| || |||||| || | || |||||||||||||||| |||||||||| |||||    
T  23257139 accaaaccaaaggatgccaccaccaaaaaataaa-aagaaaattacatgacacccatacacagaagtgggtgtctccaccaatcatgaaaatcaaaa 23257044  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 442 - 533
Target Start/End: Complemental strand, 37268407 - 37268316
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaa 533  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||| | ||||  |  ||||||||||| ||||||| |||  |||||||||||    
T  37268407 aaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaaagtgacgaatcactcaaagtctgttacaaa 37268316  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 442 - 544
Target Start/End: Complemental strand, 17607726 - 17607624
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    |||| |||||| ||||||||||| ||||| | || ||||||||  ||||||  |  | |||||||||||||||||||||||||||||||||  |||||||    
T  17607726 aaataaaaatggaatatattgctcaaacggacagtgattcacctcgcacaaggtgtgttaaaagtgatgaatcacacaatatctgttacaagatcatggc 17607627  T
Q  542 acc 544  Q
    |||    
T  17607626 acc 17607624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 531
Target Start/End: Original strand, 45701191 - 45701280
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttaca 531  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||| ||||||  |  |||||||| |||||||||| |||| |||||||||    
T  45701191 aaatcaaaatggaatatattgcttaaaagaaaagtgattcacccagcacaaggtgtgctaaaagcgatgaatcactcaatgtctgttaca 45701280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 442 - 546
Target Start/End: Complemental strand, 12915832 - 12915728
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||  |||||  |  | ||||| ||||||||||| ||| ||||| ||||||| || |||    
T  12915832 aaatcaaaatgaaatatattgctcaaacgagaagtgattcaccccacacaaggtgtgttaaaactgatgaatcacgcaaaatctgatacaaagacaaggc 12915733  T
Q  542 accta 546  Q
    |||||    
T  12915732 accta 12915728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 442 - 529
Target Start/End: Original strand, 2220100 - 2220187
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgtta 529  Q
    ||||||||||| | ||||||||| |||||||||| ||||||||    |||| ||  |||||||||||||||||||| |||||| ||||    
T  2220100 aaatcaaaatggattatattgctcaaacgaaaagtgattcacctcatacaagatgtgctaaaagtgatgaatcacataatatccgtta 2220187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 638
Target Start/End: Original strand, 22858803 - 22858868
Alignment:
Q  573 aaataacaaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    |||||| ||||||| || |||  | ||||||| | |||||||||||||| ||||||||||||||||    
T  22858803 aaataataaaattacatgacattcatataaagtaatgggtgtctccaccaatcatgaaaaccaaaa 22858868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 638
Target Start/End: Original strand, 14781986 - 14782183
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||| ||||||||||| ||| ||  || |||||||||  |||||  |  |||||||||| |||||||| |||  ||||||||||||||  |||    
T  14781986 aaatcaaaatggaatatattgctcaaaagaggagagattcaccccacacaaggtgtgctaaaagtggtgaatcacccaaagtctgttacaaagtccaggc 14782085  T
Q  542 acctaataagaggttgctgccaccgaa-aaagaaataacaaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    | |||  || ||| |||  |||||||| ||| ||| ||  |||||| || |||||| || ||||||||||||||| ||||| |||||| || ||||||    
T  14782086 atctatgaaaaggatgccaccaccgaacaaaaaaaaaatcaaattacatgacacccatacaaaggagtgggtgtcaccaccaatcatgcaagccaaaa 14782183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 442 - 532
Target Start/End: Original strand, 25186766 - 25186856
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaa 532  Q
    |||| |||||| ||||||||||| ||||||  ||  |||||||| ||||||     ||||||||||||||||| |||||||||||||||||    
T  25186766 aaataaaaatggaatatattgctcaaacgatcagtaattcaccccgcacaaggcgtgctaaaagtgatgaatcgcacaatatctgttacaa 25186856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 637
Target Start/End: Complemental strand, 9756412 - 9756363
Alignment:
Q  588 ataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaa 637  Q
    ||||||||| || ||||||||||||||||||||| |||||||| ||||||    
T  9756412 ataacacccctacaaaggagtgggtgtctccaccaatcatgaagaccaaa 9756363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 31848191 - 31848248
Alignment:
Q  580 aaaattatataacacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaa 637  Q
    ||||||| || |||||| || ||||||||| ||||||||||| |||||||||||||||    
T  31848191 aaaattacatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaa 31848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 638
Target Start/End: Complemental strand, 29361577 - 29361530
Alignment:
Q  591 acacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    |||||| || ||||||||||||||||||||| ||| ||||||||||||    
T  29361577 acacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaaa 29361530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 546
Target Start/End: Original strand, 7638888 - 7638992
Alignment:
Q  442 aaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgttacaaagtcatggc 541  Q
    ||||||||||| |||||||| || |||||||||| ||||||||| ||| ||  |   ||||||||||||||||||   ||||||||||||||  || |||    
T  7638888 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcataaggtgtactaaaagtgatgaatcactagatatctgttacaaacacaaggc 7638987  T
Q  542 accta 546  Q
    |||||    
T  7638988 accta 7638992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 30188617 - 30188542
Alignment:
Q  454 aatatattgctaaaacgaaaagggattcaccctgcacaatatacgctaaaagtgatgaatcacacaatatctgtta 529  Q
    ||||||||||| |||||||| | ||||||||| |||| | ||  ||||| ||||||||||||||||| ||||||||    
T  30188617 aatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatcacacaaaatctgtta 30188542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 532
Target Start/End: Original strand, 7676830 - 7676863
Alignment:
Q  499 ctaaaagtgatgaatcacacaatatctgttacaa 532  Q
    ||||||||||||||||||||||||||||||||||    
T  7676830 ctaaaagtgatgaatcacacaatatctgttacaa 7676863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 637
Target Start/End: Original strand, 19667633 - 19667679
Alignment:
Q  591 acacccgtataaaggagtgggtgtctccaccgatcatgaaaaccaaa 637  Q
    |||||| || ||||||||||||||||||||| ||||||||| |||||    
T  19667633 acacccatacaaaggagtgggtgtctccaccaatcatgaaagccaaa 19667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 492
Target Start/End: Original strand, 858 - 911
Alignment:
Q  439 aataaatcaaaatgaaatatattgctaaaacgaaaagggattcaccctgcacaa 492  Q
    |||||||||||||| ||||||||||| ||| |||||| ||||||||| ||||||    
T  858 aataaatcaaaatggaatatattgctcaaatgaaaagtgattcaccccgcacaa 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 638
Target Start/End: Complemental strand, 2119 - 2082
Alignment:
Q  601 aaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  2119 aaaggagtgggtgtcaccaccaatcatgaaaaccaaaa 2082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 638
Target Start/End: Complemental strand, 9055 - 9018
Alignment:
Q  601 aaaggagtgggtgtctccaccgatcatgaaaaccaaaa 638  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  9055 aaaggagtgggtgtcaccaccaatcatgaaaaccaaaa 9018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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