View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4856-Insertion-7 (Length: 732)
Name: NF4856-Insertion-7
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856-Insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 7 - 455
Target Start/End: Complemental strand, 51982077 - 51981627
Alignment:
| Q |
7 |
agcagaaaggataaaaagtgtgaaattcaaagagcaaagaaggaggacggtgaaggaacatgcttttctaagattggaagatgccattttggtgctgtat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51982077 |
agcagaaaggataaaaagtgtgaaattcaaagagcaaagaaggaggacggtgaaggaacatgcttttctaagattggaagatgccattttggtgctgtat |
51981978 |
T |
|
| Q |
107 |
tttgtgtgtgtg--gagaatatgtttattggaaaacggtaaagaaattgaatttataaagcaggttgaatggtaccgttaaagattgatgtaacggctag |
204 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51981977 |
tttgtgtgtgtgtggagaatatgtttattggaaaacggtagagaaattgaatttataaagcaggttgaatggtaccgttaaagattgatgtaacggctag |
51981878 |
T |
|
| Q |
205 |
cataaggaagaccccacttttatggtgaaaatgcaatattcccttcgcaggtattcaaacaaactacctcgaaataaggtgaatcaaatttgcacctttt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51981877 |
cataaggaagaccccacttttatggtgaaaatgcaatattcccttcgcaggtattcaaacaaactacctcgaaataaggtgaatcaaatttgcaccttgt |
51981778 |
T |
|
| Q |
305 |
ttatatcattgggaatcatgtttggagccatgtcgtaacagttactactcgtgatagaaatatacgatattaatcaatttgtgataatccttattagaaa |
404 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51981777 |
tgatatcattgggaatcatgtttggagccatgttgtaacagttactactcatgatagaaatatacgatattaataaatttgtgataatccttattagaaa |
51981678 |
T |
|
| Q |
405 |
gaagaaaaaataatcaggtagtaacgtacgaacattgttagaataatttat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51981677 |
gaagaaaaaataatcaggtagtaacgtacgaacattgttagaataatttat |
51981627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 521 - 732
Target Start/End: Complemental strand, 51981407 - 51981196
Alignment:
| Q |
521 |
gatcagggaaaataacccttggtgaacaaaagttgagtagacgtttatttaaatttgagagtgtgtttgactacaccaaatcactaacttataatagata |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51981407 |
gatcagggaaaataacccttggtgaacaaaagttgagtagacatttatttaaatttgagagtgtgtttgactacaccaaatcactaacttataatagata |
51981308 |
T |
|
| Q |
621 |
gttcattgcggagtactcgttcattgcgtataaatttgtatgatcaaaataaaattatttgataaaagttgctcgctcgtgaactgatagtgcttttcgc |
720 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51981307 |
gttcatcgcggagtactcgatcattgcgtataaatttgtatgatcaaaataaaattatttgataaaagttgctcgctcgtgaactgatagtgcttttcgc |
51981208 |
T |
|
| Q |
721 |
tataacttttaa |
732 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51981207 |
tataacttttaa |
51981196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 480
Target Start/End: Complemental strand, 51981478 - 51981445
Alignment:
| Q |
447 |
ataatttatcatggtaaaccatatattagcaacc |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
51981478 |
ataatttatcatggtaaaccatatattagcaacc |
51981445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University