View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4856-Insertion-8 (Length: 634)
Name: NF4856-Insertion-8
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 8 - 634
Target Start/End: Original strand, 5208687 - 5209309
Alignment:
| Q |
8 |
caaacttccaaaccgacccttagtcactcccaatacagatacttccggcttattccacactgtcaagccccaaaaataaaattgttaaagaaagacagca |
107 |
Q |
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| T |
5208687 |
caaacttccaaaccgacccttagtcactcccaatacagatacttccggcttattccac--tgtcaagccccaaaaat-----tgttaaagaaagacagca |
5208779 |
T |
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| Q |
108 |
gttcaaactaggggcgtaggtttactaaaccatatataagaaaaatcattttcaaattaaatgtttgattgaacaaaattgtttcctaaaaattggttta |
207 |
Q |
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| T |
5208780 |
gttcaaactaggggtgtaggtttactaaaccatatataagaaaaatcattttcaaattaaatgtttgattgaacaaaattgtttcctaaaaattggttta |
5208879 |
T |
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| Q |
208 |
tgattttataatctggtttttgaaatggattagatttagaactgcagttgaatcagaaaaatcttatattaatgcaaaatctacatttaaagtgaatcag |
307 |
Q |
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| T |
5208880 |
tgattttataatctggtttttgaaatggattagatttagaactgcagttgaatcagaaaaatcttatattaatgcaaaatctacatttaaagtgaatctg |
5208979 |
T |
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| Q |
308 |
aaaaa-gcagtggtgacaaatataaaccaatctcaatcacataatccttcacgaatgataagtgaatattca--gagattttaagaaaaggaaggtgtta |
404 |
Q |
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| T |
5208980 |
aaaaaagcagtggtgacatatataaaccaatctcaatcgcataatccttcacgaatgataagtgaatattcacagagattttaagaaacggaaggtgtta |
5209079 |
T |
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| Q |
405 |
agatagttatggtttgttagttaagtgtgtgttagtcaatttggaattagttaggagttagttacttcattagtaagagtagttgagttctataaatagg |
504 |
Q |
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| T |
5209080 |
agatagttatggtttgttagttaagtgtgtgttagtcaatttggaattagttaggagttaattacttcattagtaagagtagttgagttctataaatagg |
5209179 |
T |
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| Q |
505 |
actaatttactatcttttatcaatcaatatgctttcttacgagcttttacctcatgagtattcccatgctcactttctctcgcacgagtctgatctatgg |
604 |
Q |
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| T |
5209180 |
actaatttactatcttttatcaatcaatatgctttcttacgagcttttacctcatgagtattcccatgctcactttctctcgcacgagtctggtctatgg |
5209279 |
T |
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| Q |
605 |
cactatgatcccatgattcttcacagaagg |
634 |
Q |
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| T |
5209280 |
cactatgatcccatgattcttcacagaagg |
5209309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 37201792 - 37201828
Alignment:
| Q |
434 |
tgttagtcaatttggaattagttaggagttagttact |
470 |
Q |
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| T |
37201792 |
tgttagtcaatttggaattagttaggagttagttact |
37201828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 630
Target Start/End: Original strand, 37201925 - 37202011
Alignment:
| Q |
545 |
gagcttttacctca-tgagtattcccatgctcactttctctcgcacgagtctgatctatggcactatgatcccatgattcttcacag |
630 |
Q |
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| T |
37201925 |
gagcttttatctcaatgtgtattcctatgctctctttctctcctgtgagtatgatctatggccctatcatcccatgattcttcacag |
37202011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 627
Target Start/End: Original strand, 22367199 - 22367313
Alignment:
| Q |
511 |
ttactatcttttatcaatcaa-tatgctttcttacgagcttttacctcatgagtattcccatgctcactttctctcgcacgagtctgatctatggcacta |
609 |
Q |
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| T |
22367199 |
ttactatcttttatcagccaaatatgatatcttatgagtttttacctcatgagtattcctatgctccttttctctcctgcgagt---atctatggcacta |
22367295 |
T |
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| Q |
610 |
tgatcccatgattcttca |
627 |
Q |
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| T |
22367296 |
tgatcctatgattcttca |
22367313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 41184629 - 41184672
Alignment:
| Q |
518 |
cttttatcaatcaatatgctttcttacgagcttttacctcatga |
561 |
Q |
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| T |
41184629 |
cttttatcaatcaatatgctttctaacaagcttttaccttatga |
41184672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 585
Target Start/End: Original strand, 11030416 - 11030494
Alignment:
| Q |
507 |
taatttactatcttttatcaatcaatatgctttcttacgagcttttacctcatgagtattcccatgctcactttctctc |
585 |
Q |
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| T |
11030416 |
taattcaccatcttttatcaatcaaaatgattccttttgagcttttacctcatgattattcatatgctgtctttctctc |
11030494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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