View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4856-Insertion-9 (Length: 570)
Name: NF4856-Insertion-9
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856-Insertion-9 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 159 - 570
Target Start/End: Original strand, 2673467 - 2673878
Alignment:
| Q |
159 |
tgattcagttattaatcnnnnnnngaatgcaatttcgatgaaattgaagaaggaagaaagaaaatcaatcatgagaattgagttttgtggatatttgaga |
258 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2673467 |
tgattcagttattaatcaagaaaagaatgcaatttcgatgaaattgaagacggaagaaagaaaatcaattatgagaattgagttttgtggatatttgaga |
2673566 |
T |
|
| Q |
259 |
aaaaatgcagcaacaatggcaggaccccattacagggcactgataccatgtgaaagatataggataaactccattaatggaggaagagagcttgaaggag |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673567 |
aaaaatgcagcaacaatggcaggaccccattacagggcactgatatcatgtgaaagatatagcataaactccattaatggaggaagagagcttgaaggag |
2673666 |
T |
|
| Q |
359 |
aagaaaactttattctcattgtaatatttcacacaaaactaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcctcctaactgtggtt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673667 |
aagaaaactttattctcattgtaatatttcacacaaaactaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcctcctaactgtggtt |
2673766 |
T |
|
| Q |
459 |
acttctatatctaatcatagttagaaaacagttacaagtagttaacgacctagttaacttgcagtgcaagttaactaactaacttactaactaaatgcgc |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
2673767 |
acttctatatctaatcatagttagaaaacagttacaagtagttaacgacctagttaacttgcagtgcaagttaactaactaactaactaactaaatgtgc |
2673866 |
T |
|
| Q |
559 |
ttacactagctt |
570 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2673867 |
ttacactagctt |
2673878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 2673315 - 2673398
Alignment:
| Q |
8 |
tcaatgagaagaagtgtgtccaccattaacactaccggttgtgctatccatagacatgatgcacaagaataacataagaaacac |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2673315 |
tcaatgagaagaagtgtgtccaccattaacactaccggttgtgctatccatagacatgatgcacaagaaaaacataagaaacac |
2673398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 307 - 539
Target Start/End: Complemental strand, 5293989 - 5293747
Alignment:
| Q |
307 |
tgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaactaaaaatac |
406 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5293989 |
tgtgaaaagtatagcatacactccattgatggaggaagaaagctcaaaggagaagaaaactttattctcaatgtaatatttcacacaaaac-aaaaatac |
5293891 |
T |
|
| Q |
407 |
aaagtagtg-tagcaatagtacatatagcacctatatcctcctaac-----------tgtggttacttctatatctaatcatagttagaaaacagttaca |
494 |
Q |
| |
|
|||||| | |||||| |||| |||||| || | || | ||||||| |||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
5293890 |
-aagtagagctagcaagagtatatatagaacttgtaacttcctaacggtcaactaattgtggttacttctataggtaatcatggttagaaaacggttaca |
5293792 |
T |
|
| Q |
495 |
agtagttaacgacctagttaacttgcagtgcaagttaactaacta |
539 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
5293791 |
aggagttaagatcctagttaacttgtagtgcaagttaactaacta |
5293747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 307 - 539
Target Start/End: Complemental strand, 5298541 - 5298299
Alignment:
| Q |
307 |
tgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaactaaaaatac |
406 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5298541 |
tgtgaaaagtatagcatacactccattgatggaggaagaaagctcaaaggagaagaaaactttattctcattgtaatatttcacacaaaac-aaaaatac |
5298443 |
T |
|
| Q |
407 |
aaagtagtg-tagcaatagtacatatagcacctatatcctc-----------ctaactgtggttacttctatatctaatcatagttagaaaacagttaca |
494 |
Q |
| |
|
|||||| | |||||| |||| |||||| || | || | || |||| |||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
5298442 |
-aagtagagctagcaagagtatatatagaacttgtaacttcttaacggtcaactaattgtggttacttctataggtaatcatggttagaaaacggttaca |
5298344 |
T |
|
| Q |
495 |
agtagttaacgacctagttaacttgcagtgcaagttaactaacta |
539 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
5298343 |
aggagttaagatcctagttaacttgtagtgcaagttaactaacta |
5298299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 398
Target Start/End: Complemental strand, 27506626 - 27506544
Alignment:
| Q |
316 |
tataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaact |
398 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| ||||| | |||||||| |
|
|
| T |
27506626 |
tatagcataaactccatcaatggaggaagaaagcttgaaggagaactaaaatttattctcattgtattattttagacaaaact |
27506544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 27372173 - 27372106
Alignment:
| Q |
416 |
tagcaatagtacatatagcacctatatcctcctaactgtggttacttctatatctaatcatagttaga |
483 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
27372173 |
tagcaagagtatatatatcacttatatcctcctaactgtagttacttctatagctaatcatagttaga |
27372106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 27462523 - 27462456
Alignment:
| Q |
416 |
tagcaatagtacatatagcacctatatcctcctaactgtggttacttctatatctaatcatagttaga |
483 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
27462523 |
tagcaagagtatatatatcacttatatcctcctaactgtagttacttctatagctaatcatagttaga |
27462456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 307 - 539
Target Start/End: Complemental strand, 54722393 - 54722151
Alignment:
| Q |
307 |
tgtgaaagatataggataaactccattaatggaggaagagagcttgaaggagaagaaaactttattctcattgtaatatttcacacaaaactaaaaatac |
406 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
54722393 |
tgtgaaaagtatagcatacactccattgatggaggaagaaagctcaaaggagaagaaaactttattctcactgtaatatttcacacaaaac-aaaaatac |
54722295 |
T |
|
| Q |
407 |
aaagtagtg-tagcaatagtacatatagcacctatatcctc-----------ctaactgtggttacttctatatctaatcatagttagaaaacagttaca |
494 |
Q |
| |
|
|||||| | |||||| |||| |||||| || | || | || |||| |||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
54722294 |
-aagtagagctagcaagagtatatatagaacttgtaacttcttaacggtcaactaattgtggttacttctataggtaatcatggttagaaaacggttaca |
54722196 |
T |
|
| Q |
495 |
agtagttaacgacctagttaacttgcagtgcaagttaactaacta |
539 |
Q |
| |
|
|| |||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
54722195 |
aggagttaagatcccagttaacttgtagtgcaagttaactaacta |
54722151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 538
Target Start/End: Complemental strand, 46178105 - 46177912
Alignment:
| Q |
358 |
gaagaaaactttattctcattgtaatatttcacacaaaactaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcc--tcctaact--- |
452 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| |||||| | ||| ||||| ||||||||| || |||| |||||||||||| |||| |||||||| |
|
|
| T |
46178105 |
gaagaaaactctattctcattatgttatttcaaacaaaattgaaattacaa-gtagtgtagaaagagtatatatagcacctacatcccctcctaactaac |
46178007 |
T |
|
| Q |
453 |
--------gtggttacttctat-atctaatcatagttagaaaacagttacaagtagttaacgacctagttaacttgcagtgcaagttaactaact |
538 |
Q |
| |
|
|||||||||||||| | |||||||| ||||| ||||||||||||| ||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
46178006 |
aactagctgtggttacttctatcaactaatcatggttaggcaacagttacaagtggttaaggtcctagttaacttgtagtgcaagttaactaact |
46177912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 21212583 - 21212676
Alignment:
| Q |
343 |
agagagcttgaaggagaagaaaactttattctcattgtaatatttcacac-aaaactaaaaatacaaagtagtgtagcaatagtacatatagcac |
436 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||| ||| ||||||||||| || |||| ||||||||| |
|
|
| T |
21212583 |
agagagcttgaaggagaagaaaacttcattctcattataatatctcacacaaaaactaactttac-aagtagtgtaggaagagtatatatagcac |
21212676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 28751314 - 28751267
Alignment:
| Q |
349 |
cttgaaggagaagaaaactttattctcattgtaatatttcacacaaaa |
396 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
28751314 |
cttgaaggagaagaaaacttcattctcattttaatatttcacacaaaa |
28751267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 539
Target Start/End: Complemental strand, 8165622 - 8165530
Alignment:
| Q |
447 |
ctaactgtggttacttctatatctaatcatagttagaaaacagttacaagtagttaacgacctagttaacttgcagtgcaagttaactaacta |
539 |
Q |
| |
|
|||||| | |||||||||||||||||| || ||||||||||||| ||| ||||| ||| |||||||| | |||||||||||||||||| |
|
|
| T |
8165622 |
ctaactatagttacttctatatctaattctaattagaaaacagttttaagaggttaagatccttgttaacttccggtgcaagttaactaacta |
8165530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 46649561 - 46649509
Alignment:
| Q |
21 |
gtgtgtccaccattaacactaccggttgtgctatccatagacatgatgcacaa |
73 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||||||||| |||||| |
|
|
| T |
46649561 |
gtgtgtccaccattaacacttcctgcagtgctatccatagacatgacgcacaa |
46649509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University