View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4856_high_2 (Length: 408)
Name: NF4856_high_2
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 514797 - 514633
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagcttataggttgtacataacataagaattagcaaagagtagatataaccttgagaggcttccttctgtagagtaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
514797 |
tctccaggatagcttatgaaaacagcttataggttgtacataa-----gaattagcaaagagtaaatataaccttgagaggtttccttctgtagagtaga |
514703 |
T |
|
| Q |
119 |
atagttccatagataatcatcaaaaatagataatttagaaatgattgtgatgttggagcattaattccta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
514702 |
atagttccatagataatcatcaaaaatacataatttagaaacgactgtgacgttggagcattaattccta |
514633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 514510 - 514389
Alignment:
| Q |
270 |
accttttttagctaaatcagaagaagcgaaaccagtagcagtaatgagaagagaaagaaattgacctaaaacaagaccaattaatgtgttcttagtccaa |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
514510 |
accttttttagctaaatcagaagaagcgaaaccagtagcagtgatgagaagagaaagaaattgacctaaagcaagaccaattaatgtgttcttagtccaa |
514411 |
T |
|
| Q |
370 |
tatttcttaatatcgatcatca |
391 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
514410 |
tatttcttaatatcgataatca |
514389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 6509343 - 6509374
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagcttatag |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6509343 |
tctccaggatagcttatgaaaacagcttatag |
6509374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 8578603 - 8578561
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagcttataggttgtacataa |
61 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8578603 |
tctccgggatagcttatgaaaacagcttatagtctgtacataa |
8578561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 25097416 - 25097387
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagcttat |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25097416 |
tctccaggatagcttatgaaaacagcttat |
25097387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 39274561 - 39274529
Alignment:
| Q |
24 |
aggatagcttatgaaaacagcttataggttgta |
56 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
39274561 |
aggatagcttatgaaaacagcttatagattgta |
39274529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 4308597 - 4308563
Alignment:
| Q |
16 |
cagtctccaggatagcttatgaaaacagcttatag |
50 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4308597 |
cagtctccaggatagcttatgaaaacaacttatag |
4308563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 31686403 - 31686431
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagctta |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31686403 |
tctccaggatagcttatgaaaacagctta |
31686431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 24158543 - 24158572
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagcttat |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24158543 |
tctccaggatagcttatgaaaacagcttat |
24158572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 41452553 - 41452525
Alignment:
| Q |
19 |
tctccaggatagcttatgaaaacagctta |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41452553 |
tctccaggatagcttatgaaaacagctta |
41452525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University