View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4856_high_3 (Length: 366)
Name: NF4856_high_3
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 53037524 - 53037860
Alignment:
| Q |
19 |
gtggctactagtcttgcaggggatttaatatctaagcctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtga |
118 |
Q |
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| T |
53037524 |
gtggctactagtcttgcaggggatttaatatctaagcctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtga |
53037623 |
T |
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| Q |
119 |
gaatgggaattgagtattttaagaagcaagaggatttgactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatggaaa |
218 |
Q |
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| T |
53037624 |
gaatgggaatcgagtattttaagaagcaagaggatttgactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatgggaa |
53037723 |
T |
|
| Q |
219 |
tccaaatttaggagtggttagttggttgacattgccaatttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattca |
318 |
Q |
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| T |
53037724 |
tccaaatttaggagtggttagttggttgacattgccaatttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattca |
53037823 |
T |
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| Q |
319 |
gatggagattctttgcttcttcctagttatgatgatg |
355 |
Q |
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| T |
53037824 |
gatggagattctttgcttcttcctagttatgatgatg |
53037860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 39996067 - 39995742
Alignment:
| Q |
20 |
tggctactagtcttgcaggggatttaatatctaagcctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgag |
119 |
Q |
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| T |
39996067 |
tggctactagtctagcaggtgatttaatgtctaaacccttagggtatgcttcaagtaggataagggaagcggttgagaaagtgaacgatgagtatattag |
39995968 |
T |
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| Q |
120 |
aatgggaattgagtattttaagaagcaagaggatttgactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatggaaat |
219 |
Q |
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|||| | |||||| |||||||||||||| |||||||||||||| ||||||||||| | | | |||| || ||| || ||||| |||||| | ||| |
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| T |
39995967 |
gttggggaatgagtactttaagaagcaagaagatttgactaagttccaagatcttcaagtt---gtagggaatggtgagaaggggcctttttattggaat |
39995871 |
T |
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| Q |
220 |
ccaaatttaggagtggttagttggttgacattgccaatttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattca- |
318 |
Q |
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|| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| || || ||||||||||||| |||||||||||| | |
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| T |
39995870 |
cctaatttaggagtgactagttggttgtcattgccaatttatggacttgattttgggtggggaaaggaggtttatatggggctaggaacacatgaagaac |
39995771 |
T |
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| Q |
319 |
--gatggagattctttgcttcttcctagt |
345 |
Q |
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| T |
39995770 |
ttgatggagattcattgcttcttcctagt |
39995742 |
T |
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