View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4856_low_1 (Length: 664)
Name: NF4856_low_1
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 16 - 656
Target Start/End: Original strand, 33390771 - 33391408
Alignment:
| Q |
16 |
catcccaatgaactttatcgctcacatttccatgccatgttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaa |
115 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390771 |
catcccaatgaactttatcactcacctttccatcccatgttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaa |
33390870 |
T |
|
| Q |
116 |
ttgctcaggagctataggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390871 |
ttgctcaggagctataggccaagtaatcataggtactccagcagctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagct |
33390970 |
T |
|
| Q |
216 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390971 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctat |
33391070 |
T |
|
| Q |
316 |
cttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttact |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33391071 |
cttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaaggaagtgatttttact |
33391170 |
T |
|
| Q |
416 |
tccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtatgat |
515 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33391171 |
tccaaagcacacataaacaat---tgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttctgcagtatgat |
33391267 |
T |
|
| Q |
516 |
gtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagcataaacaccatcaagctcat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33391268 |
gtatccatatctctgttgtaaactgagaatggacctatatgccattctttttttccaagaacctctctataataatcagcataaacaccatcaagctcat |
33391367 |
T |
|
| Q |
616 |
agaagctattgacaataacgccataactcctcgcctatgat |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33391368 |
agaagctattgacaataacgccataactcctcgcctctgat |
33391408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 50 - 397
Target Start/End: Complemental strand, 33383249 - 33382902
Alignment:
| Q |
50 |
ccatgttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggt |
149 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||| ||| | ||||||||||| |||||| |
|
|
| T |
33383249 |
ccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggt |
33383150 |
T |
|
| Q |
150 |
actccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaac |
249 |
Q |
| |
|
|| |||||| | |||| ||| ||| | | |||||||||||||||||||||| ||||||||| |||| |||| ||||||||| ||| || ||||||| |
|
|
| T |
33383149 |
accccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaac |
33383050 |
T |
|
| Q |
250 |
ctcttataattagtccctttcctttcattcttttctcaaa---ttctagaagacctttaat-ttctctatcttctgcatttttcttcaccacccaaacaa |
345 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| | || | ||| ||||| ||||||| || || |||||||||||| || |
|
|
| T |
33383049 |
ctcttataattagtccctttccttccattcttttctcaaatccttctggtagcc----aatcttctccatcttctttgcttctcctcaccacccaaataa |
33382954 |
T |
|
| Q |
346 |
aatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagtt |
397 |
Q |
| |
|
|| || ||| |||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
33382953 |
aaaattgcccggatgcttcaagtcccgtagcaatttctttaagctgagagtt |
33382902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 33401712 - 33401878
Alignment:
| Q |
87 |
acatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatc |
186 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| | | |||||||| |||||||||||||||| |||| ||| |||||| ||||||||| |
|
|
| T |
33401712 |
acatcagttatcaacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatc |
33401811 |
T |
|
| Q |
187 |
cacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctct |
253 |
Q |
| |
|
|||||||||||| || |||||| ||| | ||| | | ||||||||| ||||||| ||||||||| |
|
|
| T |
33401812 |
cacaatgagtcataaaccctccaacagcctcatgctccaaaatcaaaagctgaggagcccaacctct |
33401878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 55 - 656
Target Start/End: Complemental strand, 18989691 - 18989096
Alignment:
| Q |
55 |
ttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactcc |
154 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
18989691 |
ttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtactcc |
18989592 |
T |
|
| Q |
155 |
agcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctctt |
254 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
18989591 |
agcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctctt |
18989492 |
T |
|
| Q |
255 |
ataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatctttcc |
354 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
18989491 |
ataattagtccttttcctttcattattttctcaaattctggtagacctt---tttctctatcttctctctttttcttcaccaccaaaactaaatctttcc |
18989395 |
T |
|
| Q |
355 |
ccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatcttt |
454 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
18989394 |
acgatgctttgagtcccatagaaatttctttaagctgagagttaaggaagtgatttgtacttccaaagcacacataaacaa---ctaagttgatatcttt |
18989298 |
T |
|
| Q |
455 |
tgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtatgatgtatccatatctctgttgtaaactgagaatggacctata |
554 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18989297 |
tgtgtcaagccactttagacacttgtgtttattgatagagggttcttttccgcggtatgatgtatccatatctctgttgtaaactgagaatagacctata |
18989198 |
T |
|
| Q |
555 |
tgccattcnnnnnnnccaagaatctctctataataatcagcataaacaccatcaagctcatagaagctattgacaataacgccataactcctcgcctatg |
654 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| || |
|
|
| T |
18989197 |
tgccattctttttttccaataaactctctataataatcagcataaacaccgtcaagctcatagaagctattgataataacgccataactcctcacctctg |
18989098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 216 - 656
Target Start/End: Complemental strand, 19001964 - 19001530
Alignment:
| Q |
216 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | || ||||| | ||| ||| |
|
|
| T |
19001964 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccgtttcctttcatccttttctcaaattctggtagtcctttt-tctctatat |
19001866 |
T |
|
| Q |
316 |
cttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttact |
415 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
19001865 |
cttctctctttttcttcaccacccaaacaaaatctttccccgatgctttgagtcccatatcaatttctttaatctgagagttaaggaagtgatttgtact |
19001766 |
T |
|
| Q |
416 |
tccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtatgat |
515 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19001765 |
tccaaagaacacataaacaactga---gttgatatctt--gtgtcaagccactttagacactcatgtttattgatagagggttcttttccgcggtatgat |
19001671 |
T |
|
| Q |
516 |
gtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagcataaacaccatcaagctcat |
615 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
19001670 |
gtatccatatctctgttgaaaactgagaatggacctatatcccattcattttgtccaagaacctctctataataatcagcataagcaccgtcaagctcat |
19001571 |
T |
|
| Q |
616 |
agaagctattgacaataacgccataactcctcgcctatgat |
656 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
19001570 |
agaagctattgacaataatgccataactcctcacctctgat |
19001530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 55 - 647
Target Start/End: Original strand, 27688577 - 27689175
Alignment:
| Q |
55 |
ttttagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactcc |
154 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||| | || | |||||||||||||||||||||||| |
|
|
| T |
27688577 |
ttttaactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactcc |
27688676 |
T |
|
| Q |
155 |
agcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctctt |
254 |
Q |
| |
|
||| | || | ||| ||| | |||||||| ||||| ||||||| ||| || || |||| ||||| |||||||| | ||| ||||||||||||||| |
|
|
| T |
27688677 |
agctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctctt |
27688776 |
T |
|
| Q |
255 |
ataattagtccctttcctttcattcttttctcaaattctagaaga--cctttaatttctctatcttctgcatttttcttcaccacccaaacaaaatcttt |
352 |
Q |
| |
|
||||||||||| ||||||| | |||||| ||| ||| || | | || || || ||| |||||||| | | || |||| ||||||| ||||| | |
|
|
| T |
27688777 |
ataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcat--ctccatcttctgtctgtgtcctcacaacccaaataaaattatg |
27688874 |
T |
|
| Q |
353 |
ccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatct |
452 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||| |||| ||||||| ||||||||||| | |
|
|
| T |
27688875 |
ccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgtaaacaa---ctgagttgatattt |
27688971 |
T |
|
| Q |
453 |
tttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtatgat-gta--------tccatatctctgttgtaaactgaga |
543 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||||| | ||||||| | ||| ||| ||| ||| ||| ||| |||| || ||||| |
|
|
| T |
27688972 |
tttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttcttttcctcggtacgatggtatttcttcctccttatttctattgtgaattgaga |
27689071 |
T |
|
| Q |
544 |
atggacctatatgccattcnnnnnnnccaagaatctctctataataatcagcataaacaccatcaagctcatagaagctattgacaataacgccataact |
643 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||| ||||||||| || ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
27689072 |
atggacctatatgccattcttttattccaagtacctctctataataatctgcataaacattctcgagctcatagaagctattaacaataactccgtaact |
27689171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 14710100 - 14710151
Alignment:
| Q |
181 |
tccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaa |
232 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| || ||| ||||| |
|
|
| T |
14710100 |
tccaaccacaatgagtcacaattcctccaatagctttattttcaagtatcaa |
14710151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 17620215 - 17620164
Alignment:
| Q |
181 |
tccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaa |
232 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| || ||| ||||| |
|
|
| T |
17620215 |
tccaaccacaatgagtcacaattcctccaatagctttattttcaagtatcaa |
17620164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 12613729 - 12613691
Alignment:
| Q |
179 |
gttccatccacaatgagtcacaattgctccaatagcttt |
217 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
12613729 |
gttccaaccacaatgagtcacaattcctccaatagcttt |
12613691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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