View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4856_low_4 (Length: 363)
Name: NF4856_low_4
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4856_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 35182393 - 35182744
Alignment:
| Q |
1 |
accatccatctgctctctcctttggatacttccgcagatcggctacactttctgtcggttcgactggtgcttctacaggagatcgaagtcgagttaatat |
100 |
Q |
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| T |
35182393 |
accatccatctgctctctcctttggatacttccgcagatcggctacactttctgtcggttcgactggtgcttctacaggagatcgaagtcgagttaatat |
35182492 |
T |
|
| Q |
101 |
cccagtagtgcgggagcgaggaacaatctggtatcttagccttcgtcctcttcccgcatccaagaatacatttcgctccacagtatcgcctccagcaatg |
200 |
Q |
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| T |
35182493 |
cccagtagtgcgggagcgaggaacaatctggtatcttagccttcgtcctcttcccgcatccaagaatacatttcgctccacagtatcgcctccagcaatg |
35182592 |
T |
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| Q |
201 |
tcaatggaggcttcacatggctgatattcaaatccaaaggctccagcagcactcgacttaaatacaaggtatgctccgtacaaagtctttggagataaca |
300 |
Q |
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| T |
35182593 |
tcaatggaggcttcacatggctgatattcaaatccaaaggctccagcagcactcgacttaaatacaaggtatgctccgtacaaagtctttggagataaca |
35182692 |
T |
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| Q |
301 |
tgatagtgctgatccagcccctgatttcaaaccaacacacactcacaggttc |
352 |
Q |
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| T |
35182693 |
tgatagtgctgatccagcccctgatttcaaaccaacacacactcacaagttc |
35182744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 83 - 340
Target Start/End: Original strand, 35178506 - 35178763
Alignment:
| Q |
83 |
tcgaagtcgagttaatatcccagtagtgcgggagcgaggaacaatctggtatcttagccttcgtcctcttcccgcatccaagaatacatttcgctccaca |
182 |
Q |
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|||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
35178506 |
tcgaagtcgagtgaatatcccagtagtacggaagcgatgaacaatctggtatcttagccttcgtcctctttccacatccaagaatacatttcgctccaca |
35178605 |
T |
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| Q |
183 |
gtatcgcctccagcaatgtcaatggaggcttcacatggctgatattcaaatccaaaggctccagcagcactcgacttaaatacaaggtatgctccgtaca |
282 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35178606 |
gtatcacctccagcaatgacaatggaggcttcacatggctgatactcaaatccataggttccagaagcactcgacttaaatacaaggtatgctccgtaca |
35178705 |
T |
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| Q |
283 |
aagtctttggagataacatgatagtgctgatccagcccctgatttcaaaccaacacac |
340 |
Q |
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| T |
35178706 |
aagtctttggagataacatgatcgtgttgatccagccccggatttcgaaccaacacac |
35178763 |
T |
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