View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4856_low_5 (Length: 353)

Name: NF4856_low_5
Description: NF4856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4856_low_5
NF4856_low_5
[»] chr4 (18 HSPs)
chr4 (75-179)||(22523377-22523480)
chr4 (75-179)||(33634657-33634760)
chr4 (92-179)||(21295007-21295093)
chr4 (74-179)||(7764008-7764114)
chr4 (75-179)||(53258684-53258787)
chr4 (88-178)||(20446441-20446530)
chr4 (76-179)||(9392559-9392661)
chr4 (75-152)||(30535768-30535846)
chr4 (75-141)||(37041640-37041705)
chr4 (76-179)||(53456098-53456203)
chr4 (78-179)||(16590333-16590432)
chr4 (94-168)||(42238725-42238801)
chr4 (120-179)||(7784146-7784204)
chr4 (78-179)||(54178393-54178494)
chr4 (90-178)||(32038201-32038288)
chr4 (74-134)||(11327398-11327459)
chr4 (96-167)||(27531170-27531242)
chr4 (125-179)||(30106192-30106245)
[»] chr2 (13 HSPs)
chr2 (75-179)||(43973409-43973512)
chr2 (74-153)||(31510241-31510320)
chr2 (75-179)||(18209604-18209703)
chr2 (74-179)||(21501474-21501578)
chr2 (74-169)||(34810033-34810130)
chr2 (75-153)||(33259887-33259967)
chr2 (116-179)||(40896180-40896242)
chr2 (79-153)||(12483151-12483225)
chr2 (117-162)||(38455395-38455439)
chr2 (75-169)||(11476220-11476314)
chr2 (37-179)||(27577818-27577967)
chr2 (116-169)||(42714250-42714302)
chr2 (116-160)||(19283167-19283211)
[»] chr3 (13 HSPs)
chr3 (44-179)||(28404979-28405111)
chr3 (75-179)||(46250092-46250195)
chr3 (74-179)||(36841375-36841479)
chr3 (75-179)||(11150040-11150143)
chr3 (78-179)||(39555238-39555337)
chr3 (90-179)||(49864787-49864874)
chr3 (91-162)||(17229096-17229166)
chr3 (36-179)||(23605887-23606027)
chr3 (78-176)||(12830517-12830613)
chr3 (90-179)||(32739649-32739736)
chr3 (79-169)||(33760970-33761061)
chr3 (75-179)||(32959125-32959230)
chr3 (116-149)||(53656510-53656543)
[»] chr8 (13 HSPs)
chr8 (74-179)||(1596613-1596717)
chr8 (34-179)||(36396675-36396822)
chr8 (75-179)||(10011182-10011286)
chr8 (74-174)||(26802173-26802273)
chr8 (78-146)||(32550074-32550142)
chr8 (77-179)||(6147960-6148062)
chr8 (89-179)||(9682680-9682769)
chr8 (78-168)||(13343549-13343638)
chr8 (78-179)||(42586669-42586769)
chr8 (82-179)||(6893714-6893816)
chr8 (78-153)||(3941243-3941324)
chr8 (116-179)||(12178185-12178247)
chr8 (116-179)||(12422613-12422675)
[»] chr7 (13 HSPs)
chr7 (78-179)||(17040295-17040395)
chr7 (34-179)||(48176923-48177070)
chr7 (34-179)||(41161277-41161425)
chr7 (79-179)||(43212860-43212962)
chr7 (74-168)||(15314563-15314658)
chr7 (75-179)||(38603870-38603970)
chr7 (79-176)||(44415981-44416077)
chr7 (89-179)||(19738381-19738470)
chr7 (122-179)||(39390657-39390713)
chr7 (104-179)||(32228207-32228282)
chr7 (76-111)||(13467042-13467077)
chr7 (269-314)||(28897977-28898023)
chr7 (94-176)||(9104058-9104138)
[»] chr1 (18 HSPs)
chr1 (78-179)||(49291961-49292061)
chr1 (78-179)||(11336176-11336276)
chr1 (78-179)||(11494195-11494295)
chr1 (76-179)||(33299660-33299762)
chr1 (116-179)||(45563664-45563726)
chr1 (96-162)||(27070443-27070508)
chr1 (116-179)||(1060309-1060371)
chr1 (116-179)||(7412202-7412264)
chr1 (75-153)||(7625713-7625792)
chr1 (124-179)||(18340953-18341007)
chr1 (75-179)||(34824514-34824623)
chr1 (78-179)||(24059884-24059983)
chr1 (76-179)||(26543544-26543649)
chr1 (109-153)||(28750673-28750717)
chr1 (116-179)||(8318749-8318811)
chr1 (90-143)||(19070933-19070986)
chr1 (90-143)||(19118823-19118876)
chr1 (74-114)||(18341001-18341041)
[»] chr5 (14 HSPs)
chr5 (75-179)||(19459646-19459749)
chr5 (75-175)||(37523233-37523332)
chr5 (75-175)||(37563405-37563504)
chr5 (34-179)||(37687929-37688077)
chr5 (88-179)||(19131313-19131404)
chr5 (74-179)||(7669825-7669929)
chr5 (78-160)||(1761737-1761816)
chr5 (116-179)||(29930713-29930775)
chr5 (78-179)||(32125459-32125559)
chr5 (78-153)||(4576601-4576676)
chr5 (116-179)||(5271932-5271994)
chr5 (90-133)||(14103187-14103229)
chr5 (79-179)||(16159290-16159386)
chr5 (79-111)||(38639633-38639665)
[»] chr6 (6 HSPs)
chr6 (75-179)||(4295808-4295912)
chr6 (78-179)||(26542501-26542600)
chr6 (75-179)||(3545957-3546061)
chr6 (78-179)||(27840981-27841081)
chr6 (78-160)||(15120623-15120704)
chr6 (90-159)||(21803411-21803479)
[»] scaffold0068 (1 HSPs)
scaffold0068 (90-159)||(58465-58533)
[»] scaffold0025 (1 HSPs)
scaffold0025 (98-179)||(66699-66779)
[»] scaffold0571 (1 HSPs)
scaffold0571 (116-179)||(9304-9367)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 22523377 - 22523480
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||| |||||| |||||| ||||||||||||||||||| ||||    
T  22523377 gagttttaacttgtacatttgttacctccttgtttttgaaaaaaatagattttgagaaaagctaatccaaatagc-ttttcattttagggtcaaaataga 22523475  T
Q  175 ttttt 179  Q
    |||||    
T  22523476 ttttt 22523480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 33634657 - 33634760
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||||| ||||||||||||| ||||||||||||| ||||| ||||    
T  33634657 gagttttaacttgtacatgtgttacctccttgttgttgaaaaaaatagattttaagaaaagctaatcctaatagc-ttttcattttaggatcaaaataga 33634755  T
Q  175 ttttt 179  Q
    |||||    
T  33634756 ttttt 33634760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 21295093 - 21295007
Alignment:
Q  92 tgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||| |||| ||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  21295093 tgtgttacctccttgttttagaaaaaaatagattttaagaaaagttaatcctaatagc-ttttcattttagggtcaaaatagattttt 21295007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 7764008 - 7764114
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaaaa--tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaatt 171  Q
    |||||||||| |||||||||| |||||||||| |||||||| ||||  |||||||||| ||||| || |||| ||||||||| ||||||| ||||||| |    
T  7764008 agagttttaaattgtacatgtattacctccttgtttttgaaaaaaaagtagattttgagaaaagctattccttatagctttt-cattttacggtcaaact 7764106  T
Q  172 agattttt 179  Q
    ||||||||    
T  7764107 agattttt 7764114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 53258684 - 53258787
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    |||||||| |||||||||  |||||||| || |||||||| || |||||||| || ||||| ||||||||||||| ||||||||||||||| ||| ||||    
T  53258684 gagttttaccttgtacattggttacctcattgtttttgaaaaacatagatttcgagaaaagctaatcctaatagc-ttttcattttagggttaaaataga 53258782  T
Q  175 ttttt 179  Q
    |||||    
T  53258783 ttttt 53258787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 20446441 - 20446530
Alignment:
Q  88 tacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatttt 178  Q
    |||||||||||||||||| |||||||| ||| | |||| | | ||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  20446441 tacatgtgttacctccttgtttttgaaaaaacttgattataagaaaagttaatcctaatagc-ttttcattttaggatcaaaatagatttt 20446530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 9392559 - 9392661
Alignment:
Q  76 agttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagat 175  Q
    |||| |||| ||||||||||||| ||| || || ||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||  |||||| |||||    
T  9392559 agttctaacatgtacatgtgttatctctttgttgttgaaaaaaataaattttgagaaaagctaatcctaatagc-ttttcattttaatgtcaaaatagat 9392657  T
Q  176 tttt 179  Q
    ||||    
T  9392658 tttt 9392661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 30535768 - 30535846
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttg-aagaaaatagattttgaaaaaagttaatcctaatagcttt 152  Q
    |||||||||| |||| |||||||| ||||||||||||| || |||||||||||||  ||||| ||||||||||||||||    
T  30535768 gagttttaacctgtagatgtgttagctccttatttttgaaaaaaaatagattttgggaaaagctaatcctaatagcttt 30535846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 37041705 - 37041640
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatc 141  Q
    ||||||||||||||||| |||||||||||||  ||||||| |||||||||||||| |||||||||||    
T  37041705 gagttttaacttgtacaagtgttacctccttgcttttgaa-aaaatagattttgagaaaagttaatc 37041640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 53456098 - 53456203
Alignment:
Q  76 agttttaacttgtacatgtgttacctccttatttttgaagaaaa----tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaatt 171  Q
    |||||||| ||||||||||||||| || ||||| ||||| ||||    |||||||||| ||||| ||||||||||||| ||||||||||||| ||||| |    
T  53456098 agttttaatttgtacatgtgttacttcattattgttgaaaaaaaaaattagattttgagaaaagctaatcctaatagc-ttttcattttaggatcaaa-t 53456195  T
Q  172 agattttt 179  Q
    ||||||||    
T  53456196 agattttt 53456203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 16590432 - 16590333
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| ||  |||||| ||||| || |||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||  |||||| |||||||    
T  16590432 ttttaactagtttatgtgtcacctctttgtttttgaa-aaaatggattttgataaaagttaatcctaatagc-ttttcattttaaagtcaaaatagattt 16590335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 42238725 - 42238801
Alignment:
Q  94 tgttacctccttatttttg--aagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaa 168  Q
    |||||||||||||||||||  || |||| ||||||||| |||||||||||||||| | ||||||||||||| |||||    
T  42238725 tgttacctccttatttttggaaaaaaaaaagattttgagaaaagttaatcctaattgatttttcattttagagtcaa 42238801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 7784146 - 7784204
Alignment:
Q  120 tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  7784146 tagattttgagaaaagttaatccttatagc-ttttcattttagggtcaaactagattttt 7784204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 54178494 - 54178393
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaa-tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatt 176  Q
    |||||||| || ||||| ||||||| | || |||||| |||| |||||||||||||||| ||||||| ||||| |||||||||||| || ||| ||||||    
T  54178494 ttttaactagttcatgtcttacctcataatgtttgaaaaaaaatagattttgaaaaaagctaatccttatagc-ttttcattttagagtgaaaatagatt 54178396  T
Q  177 ttt 179  Q
    |||    
T  54178395 ttt 54178393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 32038201 - 32038288
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatttt 178  Q
    ||||| ||||||||| || |||||| |||||||||||||| ||||| |||| ||||||| ||||| ||||||  |||||| ||||||||    
T  32038201 catgttttacctcctcatctttgaaaaaaatagattttgagaaaagctaattctaatagattttt-attttaaagtcaaaatagatttt 32038288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 11327459 - 11327398
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttg-aagaaaatagattttgaaaaaa 134  Q
    ||||||||||||||||||| ||||||||| || | |||| || |||||||||||||||||||    
T  11327459 agagttttaacttgtacatatgttacctcattgtctttgaaaaaaaatagattttgaaaaaa 11327398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 27531170 - 27531242
Alignment:
Q  96 ttacctccttatttttgaagaaa--atagattttgaaaaaagttaatcctaatagctttttcattttagggtca 167  Q
    |||||||||| |||||| | |||  ||||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  27531170 ttacctccttgtttttgcaaaaagaatagattttgagaaaagctaatcctaatagc-atttcattttagggtca 27531242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 30106192 - 30106245
Alignment:
Q  125 tttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||| ||||| ||||||||||||| |||||||||||| |||||| |||||||||    
T  30106192 tttgagaaaagctaatcctaatagc-ttttcattttagagtcaaaatagattttt 30106245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 43973512 - 43973409
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||| || |||||||||||||||| ||||    
T  43973512 gagttttaacatgtacatgtgttacctccttgtttttgaaaaaaatagattttgagaaaagctaatcctaatagc-ttctcattttagggtcaaaataga 43973414  T
Q  175 ttttt 179  Q
    |||||    
T  43973413 ttttt 43973409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 31510320 - 31510241
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttt 153  Q
    |||||||||||  ||||| |||||||||| ||||||||||| |||||| ||||||| ||||| |||||||||||||||||    
T  31510320 agagttttaacacgtacacgtgttacctctttatttttgaaaaaaataaattttgagaaaagataatcctaatagctttt 31510241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 18209604 - 18209703
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    |||||||||||||||||||||||| ||||||||||||||| |||    | ||  || |||||||||||||||||| ||||||||||||||| ||| || |    
T  18209604 gagttttaacttgtacatgtgttagctccttatttttgaaaaaa----aattaaaataaagttaatcctaatagc-ttttcattttagggtaaaaatata 18209698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 21501474 - 21501578
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    |||||| |||| || ||||||||||  ||||| || ||||| |||||||||||||| ||||| ||||||| ||||| ||| ||||||||||| ||| |||    
T  21501474 agagttctaacatgcacatgtgttatatccttgttgttgaaaaaaatagattttgagaaaagctaatcctgatagc-tttacattttagggtaaaaatag 21501572  T
Q  174 attttt 179  Q
    ||||||    
T  21501573 attttt 21501578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 34810033 - 34810130
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttg--aagaaaatagattttga-aaaaagttaatcctaatagctttttcattttagggtcaaa 169  Q
    ||||||||||||||||||||||| |||||||| ||||||  || |||| | ||||||| ||||| |||||||||||| | |||||||||||| ||||||    
T  34810033 agagttttaacttgtacatgtgtgacctccttgtttttgaaaaaaaaaaatattttgagaaaaaattaatcctaataac-ttttcattttagagtcaaa 34810130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 33259887 - 33259967
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttg--aagaaaatagattttgaaaaaagttaatcctaatagctttt 153  Q
    ||||||||||||||||||||||||||||||| ||  ||  || ||||| |||||||| ||||| |||||||||| ||||||    
T  33259887 gagttttaacttgtacatgtgttacctccttgttgatgaaaaaaaaattgattttgagaaaagctaatcctaatggctttt 33259967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 40896180 - 40896242
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| || ||||||    
T  40896180 aaaatagattttgagaaaagctaatcctaatagc-ttttcattttaggatcaaaatatattttt 40896242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 12483151 - 12483225
Alignment:
Q  79 tttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttt 153  Q
    |||||| ||| |||||||||||||||| ||||| || | |||||| ||| | ||||| |||||||||||||||||    
T  12483151 tttaacatgttcatgtgttacctccttgttttttaaaagaatagactttcagaaaagctaatcctaatagctttt 12483225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 38455395 - 38455439
Alignment:
Q  117 aaatagattttgaaaaaagttaatcctaatagctttttcattttag 162  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  38455395 aaatagattttgaaaaaagttaatcctaatag-tttatcattttag 38455439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 11476220 - 11476314
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaata-gattttgaaaaaagttaatcctaatagctttttcattttagggtcaaa 169  Q
    |||||||||| ||| ||||||||||||| || |||   || |||| | |||||||| ||||| ||||||||||||| |||||||||||| ||||||    
T  11476220 gagttttaacatgtgcatgtgttacctctttgtttaaaaaaaaaaaaagattttgagaaaagctaatcctaatagc-ttttcattttagagtcaaa 11476314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 27577967 - 27577818
Alignment:
Q  37 gtttgcctactacccataaaaatccatttnnnnnnnga----gagttttaacttgtacatgtgttacctccttattttt-----gaagaaaatagatttt 127  Q
    |||||||||||||||||||||||||||||        |     |||||||| ||||||||||||||||||||| || ||      || |||| |||||||    
T  27577967 gtttgcctactacccataaaaatccattttaaaaaaaataataagttttaagttgtacatgtgttacctccttgttgttaaaaaaaaaaaaaaagatttt 27577868  T
Q  128 gaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    || ||||| |||| |||||||| ||||||||||||| ||||| |||||||||    
T  27577867 gagaaaagctaat-ctaatagc-ttttcattttaggatcaaaatagattttt 27577818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 42714250 - 42714302
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaa 169  Q
    |||||||||||||| ||||| |||||||||||| ||||| ||||||| ||||||    
T  42714250 aaaatagattttgagaaaagctaatcctaatag-ttttttattttagagtcaaa 42714302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 19283167 - 19283211
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcatttt 160  Q
    ||||||||||||||  ||| || ||||||||||||||||||||||    
T  19283167 aaaatagattttgaggaaatttgatcctaatagctttttcatttt 19283211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 28404979 - 28405111
Alignment:
Q  44 tactacccataaaaatccatttnnnnnnngagagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcct 143  Q
    ||||||||||||||||||||||        ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||    
T  28404979 tactacccataaaaatccatttaaaaaa--agagttttaacatgtacatgtgttacctccttgtttttgaaaaaaatagaatttgagaaaagctaatcct 28405076  T
Q  144 aatagctttttcattttagggtcaaattagattttt 179  Q
    |||||| ||||||||||||||||||| |||| ||||    
T  28405077 aatagc-ttttcattttagggtcaaaatagactttt 28405111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 46250092 - 46250195
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||||||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  46250092 gagttttaacttgtacatgagctacctccttgtttttgaaaaaaatagattttgagaaaaggtaatcctaatagc-ttttcattttatggtcaaaataga 46250190  T
Q  175 ttttt 179  Q
    |||||    
T  46250191 ttttt 46250195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 36841375 - 36841479
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    ||||||||||||||||||||||||| |||||| || ||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||| || || |||    
T  36841375 agagttttaacttgtacatgtgttatctccttgttgttgaaaaaaatagattttgagaaaagttaatcctaacagc-ttttcattttaggatccaaatag 36841473  T
Q  174 attttt 179  Q
    ||||||    
T  36841474 attttt 36841479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 11150040 - 11150143
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||| |||| || |||||||||| |||||| || ||||| ||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||||| ||||    
T  11150040 gagttctaacatgcacatgtgttatctccttgttgttgaaaaaaatggattttgagaaaagctaaccctaatagc-ttttcattttagggtcaaaataga 11150138  T
Q  175 ttttt 179  Q
    |||||    
T  11150139 ttttt 11150143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 39555337 - 39555238
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| || |||||||||||||||  | |||||| ||| |||||||| ||||||| ||||||||||||| |||||||||||| |||||| || ||||    
T  39555337 ttttaactagttcatgtgttacctcctg-tatttgaaaaaattagattttcaaaaaagctaatcctaatagc-ttttcattttagagtcaaaatatattt 39555240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 49864874 - 49864787
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||||||||||| || |||| ||| ||||| ||||||| |||||| ||||||||||||| |||||||||||| |||||| |||||||||    
T  49864874 catgtgttacctctttgttttagaa-aaaatggattttggaaaaagctaatcctaatagc-ttttcattttagagtcaaaatagattttt 49864787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 17229166 - 17229096
Alignment:
Q  91 atgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttag 162  Q
    |||| |||||| ||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  17229166 atgtcttaccttcttatgtttaaaaaaaatagattttgagaaaagttaatcctaatagc-ttttcattttag 17229096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 23606027 - 23605887
Alignment:
Q  36 tgtttgcctactacccataaaaatccatttnnnnnnngagagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaag 135  Q
    ||||||||||||  ||||||||||||||||         ||||| |||| |||| |||||||| |||||| || ||||| |||||||||||||| ||||     
T  23606027 tgtttgcctactctccataaaaatccatttttaaaaaatgagttctaacatgtatatgtgttatctccttgttgttgaaaaaaatagattttgagaaaa- 23605929  T
Q  136 ttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
      ||||| || ||| ||||||||||||||||||| |||||||||    
T  23605928 -aaatcccaacagc-ttttcattttagggtcaaaatagattttt 23605887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 12830613 - 12830517
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatt 176  Q
    |||||||| || ||||||||||||| || |||||||| ||||| |||||||| ||||| ||| ||| ||||| |||||||||||| |||||| ||||||    
T  12830613 ttttaactagttcatgtgttacctctttgtttttgaa-aaaatggattttgagaaaagctaaccctgatagc-ttttcattttagagtcaaaatagatt 12830517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 32739736 - 32739649
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||||| |||||||| |||||| ||||||| ||||| |||||||| ||| ||||||||||| | || ||| |||||||||    
T  32739736 catgtgttacctccttgtttttgaa-aaaataaattttgacaaaagctaatcctattag-tttttcattttggagtgaaaatagattttt 32739649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 33760970 - 33761061
Alignment:
Q  79 tttaacttgtacatgtgttacctccttatttttgaagaaaa-taga-ttttgaaaaaagttaatcctaatagctttttcattttagggtcaaa 169  Q
    ||||||| || ||||||||||||| ||||||||||| |||| |||| ||||| |||||| ||||||||||||  |||||||||||| ||||||    
T  33760970 tttaactagttcatgtgttacctctttatttttgaaaaaaactagatttttggaaaaagctaatcctaatag-attttcattttagagtcaaa 33761061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 32959230 - 32959125
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaata--gattttgaaaaaagttaatcctaatagctttttcattttagggtcaaatta 172  Q
    |||||||||| ||| |||||||||||||||| |||||||| |||| |  |||||||| ||||  ||||  |||||||||||| ||||||| | |||| ||    
T  32959230 gagttttaacatgtgcatgtgttacctccttgtttttgaaaaaaaaaatgattttgagaaaaactaattttaatagcttttt-attttagagccaaaata 32959132  T
Q  173 gattttt 179  Q
    |||||||    
T  32959131 gattttt 32959125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 53656543 - 53656510
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagc 149  Q
    |||||||||||||||||||||||||| |||||||    
T  53656543 aaaatagattttgaaaaaagttaatcttaatagc 53656510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 1596613 - 1596717
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||| |||||||| ||||| ||     
T  1596613 agagttttaacttgtacatgtgttacctccttgttattgaaaaaaatagattttaataaaagttaatcctaatagcttttt-attttaggatcaaaataa 1596711  T
Q  174 attttt 179  Q
    ||||||    
T  1596712 attttt 1596717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 36396675 - 36396822
Alignment:
Q  34 tttgtttgcctactacccataaaaatccatttnnnnnnnga---gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaa 130  Q
    ||||||||||||||||| ||||||||||||||        |   ||||||||||||||||||||||||||| ||| | |||||  ||||||||||||||     
T  36396675 tttgtttgcctactacctataaaaatccattttttaaaaaaaatgagttttaacttgtacatgtgttaccttcttgtgtttgagaaaaatagattttgag 36396774  T
Q  131 aaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  36396775 aaaagctaatcctaatagc-ttttcattttagggtcaaaatagattttt 36396822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 10011182 - 10011286
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaa-tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    |||||||||||| |||||||||||||| ||| || ||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||    
T  10011182 gagttttaacttatacatgtgttaccttcttgttgttgaaaaaaaatagattttgagaaaagctaatcctaatagc-ttttcattttagggtcaaaatag 10011280  T
Q  174 attttt 179  Q
    ||||||    
T  10011281 attttt 10011286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 26802273 - 26802173
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaa-aatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaatta 172  Q
    ||||||||||||||||||||| |||||||||| |||||||| || |||| |||||||||||||||||||||||||   ||||||||||||||||||| ||    
T  26802273 agagttttaacttgtacatgtcttacctccttgtttttgaaaaataataaattttgaaaaaagttaatcctaata-aattttcattttagggtcaaaata 26802175  T
Q  173 ga 174  Q
    ||    
T  26802174 ga 26802173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 32550142 - 32550074
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaat 146  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||    
T  32550142 ttttaacttgttcatgtgttacctccttgtttttgaaaaaaatagattttgagaaaagctaatcctaat 32550074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 6147960 - 6148062
Alignment:
Q  77 gttttaacttgtacatgtgttacctccttatttttgaagaaaa-tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagat 175  Q
    ||||| ||||||||||||||||||||||| |  ||||| |||| || ||||||||||||| ||||||||| ||| ||||||||||| | ||||| |||||    
T  6147960 gttttgacttgtacatgtgttacctccttgtagttgaaaaaaaataaattttgaaaaaagctaatcctaaaagc-ttttcattttatgatcaaaatagat 6148058  T
Q  176 tttt 179  Q
    ||||    
T  6148059 tttt 6148062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 9682769 - 9682680
Alignment:
Q  89 acatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||| ||| || || ||||| |||||||||||||| ||||| ||| ||||||||| |||||||||||||||| || |||||||||    
T  9682769 acatgtgttatctctttgttgttgaaaaaaatagattttgagaaaagctaaccctaatagc-ttttcattttagggtcgaaatagattttt 9682680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 13343549 - 13343638
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaa 168  Q
    |||||||| || ||||||||||||| || |||||||| ||||| |||||||  ||||| ||||||||||||| |||||||||||| |||||    
T  13343549 ttttaactagttcatgtgttacctctttgtttttgaaaaaaatggattttgggaaaagctaatcctaatagc-ttttcattttagagtcaa 13343638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 42586669 - 42586769
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| || ||||| || ||||||| | | |||| |||||||||||||| ||||| ||||||||||||| |||||||||||| |||| | |||||||    
T  42586669 ttttaactagttcatgtcttgcctccttgtgtctgaaaaaaatagattttgagaaaagctaatcctaatagc-ttttcattttagagtcataatagattt 42586767  T
Q  178 tt 179  Q
    ||    
T  42586768 tt 42586769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 6893816 - 6893714
Alignment:
Q  82 aacttgtacatgtgttacctccttatttttgaagaaa------atagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagat 175  Q
    |||||||||||||||||||||||||||||  || |||      ||||||||||| ||||  ||||||||||||| ||||||||||| ||||||| |||||    
T  6893816 aacttgtacatgtgttacctccttattttataaaaaataaaaaatagattttgagaaaaactaatcctaatagc-ttttcattttaaggtcaaaatagat 6893718  T
Q  176 tttt 179  Q
    ||||    
T  6893717 tttt 6893714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 3941324 - 3941243
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaa------atagattttgaaaaaagttaatcctaatagctttt 153  Q
    |||||||||||||||||||| ||||||| |||||||| |||      || |||||||| |||||||||||||||||||||||    
T  3941324 ttttaacttgtacatgtgttccctccttgtttttgaaaaaataaaaaattgattttgacaaaagttaatcctaatagctttt 3941243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 12178185 - 12178247
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||| ||||| |||||||||||| ||||| ||||||| || ||| |||||||||    
T  12178185 aaaatagattttgagaaaagctaatcctaatag-ttttttattttagagtgaaaatagattttt 12178247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 12422613 - 12422675
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||| ||||| |||||||||||| ||||| ||||||| || ||| |||||||||    
T  12422613 aaaatagattttgagaaaagctaatcctaatag-ttttttattttagagtgaaaatagattttt 12422675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 17040295 - 17040395
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||| ||| || ||||    
T  17040295 ttttaacttgttcatgtgttacctccttgtttttgaaaaaaatagattttaagaaaagttaatcctaatagc-ttttcattttagggttaaaatatattt 17040393  T
Q  178 tt 179  Q
    ||    
T  17040394 tt 17040395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 48176923 - 48177070
Alignment:
Q  34 tttgtttgcctactacccataaaaatccatttnnnnnnngagagttttaacttgtacatgtgttacctccttatttttg----aagaaaatagattttga 129  Q
    |||||||||||||||| |||||||||||||||         |||||| |||||||| ||||||||||||||| ||||||    || |||||||||||| |    
T  48176923 tttgtttgcctactactcataaaaatccatttaaaaaaaatgagtttcaacttgtaaatgtgttacctccttgtttttgaaaaaaaaaaatagattttaa 48177022  T
Q  130 aaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
     |||| ||||||||| |||| ||||||||||||||||||| |||||||||    
T  48177023 gaaaatttaatcctagtagc-ttttcattttagggtcaaa-tagattttt 48177070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 41161425 - 41161277
Alignment:
Q  34 tttgtttgcctactacccataaaaatccatttnnnnnnnga---gagttttaacttgtacatgtgttacctccttattt-ttgaagaaaatagattttga 129  Q
    |||||||| |||||||||||||||||||||||        |   |||||||||| |||||||||||||||||||| |||    || ||||||||||||||    
T  41161425 tttgtttgtctactacccataaaaatccatttttcaaagaaaatgagttttaacatgtacatgtgttacctccttgtttaaaaaaaaaaatagattttga 41161326  T
Q  130 aaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
     ||||| ||||||||||||| |||||||||||| |||||| |||||||||    
T  41161325 gaaaagctaatcctaatagc-ttttcattttagagtcaaaatagattttt 41161277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 43212962 - 43212860
Alignment:
Q  79 tttaacttgtacatgtgttacctccttattttt---gaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagat 175  Q
    ||||||||||||||||||||||||||| |||||    || ||||| |||||||| |||||||||| |||||||| |||||||||||||| |||| |||||    
T  43212962 tttaacttgtacatgtgttacctccttgtttttaaaaaaaaaaattgattttgagaaaagttaattctaatagc-ttttcattttagggacaaaatagat 43212864  T
Q  176 tttt 179  Q
    ||||    
T  43212863 tttt 43212860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 15314563 - 15314658
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttattttt-gaagaaaatagatttt-gaaaaaagttaatcctaatagctttttcattttagggtcaa 168  Q
    |||||||||||||| ||||||||||||||||| |||||  || |||||||||||| | |||||||||||||||||||| |||||||||||| |||||    
T  15314563 agagttttaacttgcacatgtgttacctccttgtttttaaaaaaaaatagattttgggaaaaagttaatcctaatagc-ttttcattttagagtcaa 15314658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 38603970 - 38603870
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||| |||| || |||||||||| |||||| ||   ||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||    
T  38603970 gagttctaacatgcacatgtgttatctccttgtt---gaaaaaaatagattttgagaaaagctaatcctaatagc-ttttcattttagggtcaaaataga 38603875  T
Q  175 ttttt 179  Q
    |||||    
T  38603874 ttttt 38603870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 44415981 - 44416077
Alignment:
Q  79 tttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatt 176  Q
    ||||||| || ||| | ||| |||||||| |||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| |||||| ||||||    
T  44415981 tttaactagttcatatcttatctccttatgtttgaaaaaaatagattttgagaaaagttaatccaaatagcttttt-attttagagtcaaaatagatt 44416077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 19738381 - 19738470
Alignment:
Q  89 acatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||  || || ||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||| | ||| |||||||||    
T  19738381 acatgtgttaccttgttgttgttgaaaaaaatagattttgagaaaagctaatcctaatagc-ttttcattttaggattaaaatagattttt 19738470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 39390713 - 39390657
Alignment:
Q  122 gattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||| ||||||||||||||||||| |||||||||||| |||||| |||| ||||    
T  39390713 gattttgagaaaagttaatcctaatagc-ttttcattttagagtcaaaatagactttt 39390657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 32228207 - 32228282
Alignment:
Q  104 ttatttttgaagaaaa-tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||||||||| |||| || ||||| ||||||  ||||||||||||| ||||||||||||| ||||| |||||||||    
T  32228207 ttatttttgaaaaaaaatatattttaaaaaaaaataatcctaatagc-ttttcattttaggatcaaaatagattttt 32228282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 13467042 - 13467077
Alignment:
Q  76 agttttaacttgtacatgtgttacctccttattttt 111  Q
    |||||||||||||||||||||||||||||| |||||    
T  13467042 agttttaacttgtacatgtgttacctccttgttttt 13467077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 28897977 - 28898023
Alignment:
Q  269 ttttatgggttgagttagact-aacacacattctaatagttattaat 314  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||    
T  28897977 ttttatgggttgagttggactcaacacaaattctaatagttattaat 28898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 9104138 - 9104058
Alignment:
Q  94 tgttacctccttatttttgaagaaaatagattt-tgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatt 176  Q
    ||||||||| || ||||||||||||| | |||| |||||||  ||||||||||||||  ||||||||||| |||||| ||||||    
T  9104138 tgttacctctttgtttttgaagaaaaaatatttgtgaaaaa--ttaatcctaatagc-ctttcattttagagtcaaaatagatt 9104058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 49292061 - 49291961
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    ||||||||||| |||||| |||||||||||  ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||    
T  49292061 ttttaacttgtgcatgtgctacctccttatccttgaaaaaaatagattttgagaaaagctaatcctaatagcttttt-attttagggtcaaaatagattt 49291963  T
Q  178 tt 179  Q
    ||    
T  49291962 tt 49291961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 11336276 - 11336176
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||| ||||| |||||||| ||||||||||||||| || || || ||||||||||| ||||||||||||| ||||||| ||||||||||  |||||||    
T  11336276 ttttaatttgtatatgtgttatctccttatttttgaaaaacatggaatttgaaaaaagctaatcctaatagc-ttttcatattagggtcaagatagattt 11336178  T
Q  178 tt 179  Q
    ||    
T  11336177 tt 11336176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 11494295 - 11494195
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||| ||||| |||||||| ||||||||||||||| || || || ||||||||||| ||||||||||||| ||||||| ||||||||||  |||||||    
T  11494295 ttttaatttgtatatgtgttatctccttatttttgaaaaacatggaatttgaaaaaagctaatcctaatagc-ttttcatattagggtcaagatagattt 11494197  T
Q  178 tt 179  Q
    ||    
T  11494196 tt 11494195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 33299660 - 33299762
Alignment:
Q  76 agttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagat 175  Q
    |||| |||| || |||| ||||| |||||| || ||||| ||| |||||||||| ||||  ||||||||||||| ||||||||||||||||||| |||||    
T  33299660 agttctaacatgcacatatgttatctccttgttgttgaaaaaagtagattttgagaaaaactaatcctaatagc-ttttcattttagggtcaaaatagat 33299758  T
Q  176 tttt 179  Q
    ||||    
T  33299759 tttt 33299762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 45563726 - 45563664
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  45563726 aaaattgattttgagaaaagttaatcctaatagcttttt-attttagagtcaaaatagattttt 45563664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 27070443 - 27070508
Alignment:
Q  96 ttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttag 162  Q
    |||||||||| |||||||| ||||| ||||||| |||||||||||| ||||||| ||||||||||||    
T  27070443 ttacctccttgtttttgaaaaaaattgattttggaaaaagttaatcgtaatagc-ttttcattttag 27070508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 1060309 - 1060371
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||| ||||||||| ||||| |||| |||||||||||| ||||||||||||||| |||||||||    
T  1060309 aaaaaagattttgagaaaagctaattctaatagctttt-cattttagggtcaaaatagattttt 1060371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 7412202 - 7412264
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||| || |  ||||||||||||||||| ||||||||||||||| |||||||||    
T  7412202 aaaatagattttgagaagaactaatcctaatagctttt-cattttagggtcaaaatagattttt 7412264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 7625792 - 7625713
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttg-aagaaaatagattttgaaaaaagttaatcctaatagctttt 153  Q
    ||||||||||||||| ||||  | ||| ||| |||||| || |||||||||||||| ||||||||||||||||| |||||    
T  7625792 gagttttaacttgtaaatgtcctgccttcttgtttttggaaaaaaatagattttgagaaaagttaatcctaataactttt 7625713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 18341007 - 18340953
Alignment:
Q  124 ttttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||    
T  18341007 ttttgaaaaaagttaatcctaataacttttt-attttaggatcaaaatagattttt 18340953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 34824623 - 34824514
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttg------aagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaa 168  Q
    |||||||||| |||||||||||||||||||| |||||       || |||||  ||||||| ||||| ||||| ||||||||||| ||||||||| ||||    
T  34824623 gagttttaacctgtacatgtgttacctccttgttttttttagaaaaaaaaatgaattttgagaaaagctaatcataatagctttt-cattttaggatcaa 34824525  T
Q  169 attagattttt 179  Q
    | |||||||||    
T  34824524 aatagattttt 34824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 24059983 - 24059884
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| || |||||||||| || || ||||| || ||| | |||||||| ||||  ||||||||||||||||| |||||||| |||||| |||||||    
T  24059983 ttttaactagttcatgtgttacgtctttgttttttaataaa-tggattttgagaaaaactaatcctaatagctttt-cattttagagtcaaaatagattt 24059886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 26543649 - 26543544
Alignment:
Q  76 agttttaacttgtacatgtgttacctccttatttttgaaga---aaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaatta 172  Q
    ||||||||||| ||||| |||||| |||||||||||||| |   ||||||||||| |||||||  |||| |||||  | |||||||||||| ||||| ||    
T  26543649 agttttaacttatacatatgttacgtccttatttttgaaaaattaaatagattttaaaaaaagcgaatcgtaata-atctttcattttaggatcaaaata 26543551  T
Q  173 gattttt 179  Q
     ||||||    
T  26543550 aattttt 26543544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 28750717 - 28750673
Alignment:
Q  109 tttgaagaaaatagattttgaaaaaagttaatcctaatagctttt 153  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||    
T  28750717 tttgaaaaaaatagattttagaaaaagttaatcctaatagctttt 28750673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 8318749 - 8318811
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||| ||||||||| ||||| |||| |||||||| ||||||||||||||| ||| |||||||||    
T  8318749 aaaaaagattttgagaaaagctaattctaatagc-ttttcattttagggtaaaaatagattttt 8318811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 19070986 - 19070933
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcct 143  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||  ||||||||    
T  19070986 catgtcttacctccttatgtttgaaataaatagattttgaaaaacattaatcct 19070933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 19118876 - 19118823
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcct 143  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||  ||||||||    
T  19118876 catgtcttacctccttatgtttgaaataaatagattttgaaaaacattaatcct 19118823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 18341041 - 18341001
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaa 114  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  18341041 agagttttaacttgtacatatgttacttccttgtttttgaa 18341001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 19459749 - 19459646
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||||||||||||||| ||||||||||||| || ||||| || ||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| ||||    
T  19459749 gagttttaacttgtacacgtgttacctccttgttgttgaaaaagatagattttgagaaaagctaatcctaatagc-ttttcattttaggatcaaaataga 19459651  T
Q  175 ttttt 179  Q
    |||||    
T  19459650 ttttt 19459646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 37523233 - 37523332
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||| ||||||||||| | ||||| ||||    
T  37523233 gagttttaacttgtacatgtgttacctccttgttgttgaaaaaaatagattttgagaaaagctaatcctaatagc-ttttcattttatgatcaaaataga 37523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 37563405 - 37563504
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattaga 174  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||||||| ||||||||||| | ||||| ||||    
T  37563405 gagttttaacttgtacatgtgttacctccttgttgttgaaaaaaatagattttgagaaaagctaatcctaatagc-ttttcattttatgatcaaaataga 37563503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 37687929 - 37688077
Alignment:
Q  34 tttgtttgcctactacccataaaaatccatttnnnnnnnga---gagttttaacttgtacatgtgttacctccttattt-ttgaagaaaatagattttga 129  Q
    |||||||| |||||||||||||||||||||||        |   ||||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||    
T  37687929 tttgtttgtctactacccataaaaatccattttttctaaaaaatgagttttaacttgtacatgtgttacctcctcttttgttgaaaaaaatagattttga 37688028  T
Q  130 aaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
     ||||| ||||||||||||| ||||||||||| | ||||| |||||||||    
T  37688029 gaaaagctaatcctaatagc-ttttcattttatgatcaaaatagattttt 37688077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 19131404 - 19131313
Alignment:
Q  88 tacatgtgttacctccttatttttgaagaa-aatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||||||||||||| || |||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19131404 tacatgtgttacctctttgtttttgaaaaacaatagattttaaaaaaagttaatcctaatagc-ttttcattttagggtcaaaatagattttt 19131313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 7669929 - 7669825
Alignment:
Q  74 agagttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| || | | ||||| |||| | |||||| ||||||| ||||||||||||||||||| |||    
T  7669929 agagttttaacatgtacatgtattacctccttattgttgaaaaagacatattttaaaaagaattaatcttaatagc-ttttcattttagggtcaaaatag 7669831  T
Q  174 attttt 179  Q
     |||||    
T  7669830 tttttt 7669825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 1761816 - 1761737
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcatttt 160  Q
    |||||||| || |||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||  |||||||||||    
T  1761816 ttttaactagttcatgtgttacctccttgtttt--aaaaaaatagattttgaaaaaagttaatcctaata-atttttcatttt 1761737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 29930775 - 29930713
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  29930775 aaaatagattttgagaaaagctaatcctaatagc-ttttcattttagggtcaaaatagattttt 29930713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 32125459 - 32125559
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| || ||| |||||||||||| || ||||| |||||||||||||  ||||| ||||||||| ||| |||||||||||| || ||| |||||||    
T  32125459 ttttaactagttcatatgttacctccttgttcttgaaaaaaatagattttgggaaaagctaatcctaacagc-ttttcattttagagtgaaaatagattt 32125557  T
Q  178 tt 179  Q
    ||    
T  32125558 tt 32125559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 4576601 - 4576676
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttt 153  Q
    |||||||| || ||||| ||||||| || |||||||| ||||| |||||| | |||||||||||||||||||||||    
T  4576601 ttttaactagttcatgtcttacctctttgtttttgaaaaaaatggattttaagaaaagttaatcctaatagctttt 4576676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 5271932 - 5271994
Alignment:
Q  116 aaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||||| | |||||||||| |||||| | |||||||||||| |||||| |||||||||    
T  5271932 aaaatagattttaagaaaagttaattctaataac-ttttcattttagagtcaaaatagattttt 5271994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 14103187 - 14103229
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaa 133  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  14103187 catgtgttacctccttgtttttgaa-aaaatagattttgaaaaa 14103229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 16159290 - 16159386
Alignment:
Q  79 tttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagatttt 178  Q
    ||||||| || ||||||||||||| ||  |||||| |||||| |||||||  ||||| |||| |||||||||||   ||||||| |||||| ||||||||    
T  16159290 tttaactagttcatgtgttacctctttggttttga-gaaaatggattttgggaaaagctaattctaatagcttt---attttagagtcaaaatagatttt 16159385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 38639665 - 38639633
Alignment:
Q  79 tttaacttgtacatgtgttacctccttattttt 111  Q
    |||||||||||||||||||||| ||||||||||    
T  38639665 tttaacttgtacatgtgttaccaccttattttt 38639633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 4295808 - 4295912
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttg-aagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    ||||||||||||||||||||||||||||||| |  ||| || ||||| |||||||||||||| || || |||||| |||||||||||||| ||||| |||    
T  4295808 gagttttaacttgtacatgtgttacctccttgtagttgaaaaaaaattgattttgaaaaaagctactcttaatag-tttttcattttaggatcaaaatag 4295906  T
Q  174 attttt 179  Q
    ||||||    
T  4295907 attttt 4295912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 26542600 - 26542501
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| || ||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||| |||||||||||| |||||| |||||||    
T  26542600 ttttaactagttcatgtgttacctctttgtttttaaa-aaaattgattttgagaaaagttaatcctaatagc-ttttcattttagagtcaaaatagattt 26542503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 3545957 - 3546061
Alignment:
Q  75 gagttttaacttgtacatgtgttacctccttatttttgaagaaaa-tagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattag 173  Q
    ||||| |||| |||||||||| |||||||||||  ||||| |||| || ||||||| ||||| |||||||||||| ||||||| |||||||||||| |||    
T  3545957 gagttataacatgtacatgtgctacctccttatcgttgaaaaaaaataaattttgagaaaagctaatcctaatag-tttttcaatttagggtcaaaatag 3546055  T
Q  174 attttt 179  Q
    ||||||    
T  3546056 attttt 3546061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 27840981 - 27841081
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattt 177  Q
    |||||||| || |||||||||||| ||| |||||||| |||||| ||||||| ||||  ||||||||||||| |||||||||||| || ||| |||||||    
T  27840981 ttttaactagttcatgtgttaccttcttgtttttgaaaaaaatatattttgagaaaaactaatcctaatagc-ttttcattttagagttaaaatagattt 27841079  T
Q  178 tt 179  Q
    ||    
T  27841080 tt 27841081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 15120704 - 15120623
Alignment:
Q  78 ttttaacttgtacatgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcatttt 160  Q
    |||||||| || | ||| |||||||||||| |||||| ||||||||||| || ||||| |||||||||||| |||||||||||    
T  15120704 ttttaactagttcgtgtcttacctccttatgtttgaaaaaaatagatttcgagaaaagctaatcctaatag-tttttcatttt 15120623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 21803411 - 21803479
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattt 159  Q
    ||||| ||||||| |||| ||| ||  ||||| |||||||||||| ||||||||||||| ||||||||||    
T  21803411 catgtcttacctcgttatgtttaaaataaatatattttgaaaaaaattaatcctaatag-tttttcattt 21803479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 58533 - 58465
Alignment:
Q  90 catgtgttacctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattt 159  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| || |||||||||| ||||||||||    
T  58533 catgtcttacctccttatgtttgaaataaatagattttgaaaaaaatttatcctaatag-tttttcattt 58465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 66779 - 66699
Alignment:
Q  98 acctccttatttttgaagaaaatagattttgaaaaaagttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    |||||||||| |||||| |||||| ||||||| ||||  |||||||||||| ||||||||||||  || ||| |||||||||    
T  66779 acctccttatgtttgaataaaatatattttgagaaaaactaatcctaatag-tttttcattttaaagttaaaatagattttt 66699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 9367 - 9304
Alignment:
Q  116 aaaatagattttgaaaaaa-gttaatcctaatagctttttcattttagggtcaaattagattttt 179  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| || ||||||    
T  9367 aaaatagattttgaaaaaaagctaatcctaatagc-ttttcattttaggatcaaaatatattttt 9304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University