View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857-Insertion-10 (Length: 429)
Name: NF4857-Insertion-10
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Complemental strand, 31335236 - 31334814
Alignment:
| Q |
7 |
atagagtaggtaggaagtggagaaagatgttgaagttccacgttccatctccatgacaaagtgcaaccctacttttgcgcaagtcataagacatttggca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31335236 |
atagagtaggtaggaagtggagaaagatgttgaagttccacgttccatctccatgacaaagtgcaaccctacttttgcgcaagtcataagacatttggca |
31335137 |
T |
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| Q |
107 |
catagaagcatgcattggtaatctacttcactaaattgcaaactgattagcctacaatattcaagtgaaaaatgtatatnnnnnnncggtatttataaag |
206 |
Q |
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| T |
31335136 |
catagaagcatgcattggtaatctacttcactaaattgcaaactgattagcctacaatattcaagtgaaaaatgtatataaaaaaacggtatttataaag |
31335037 |
T |
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| Q |
207 |
ttgatgtgatttgaaatttaggcatcat-aatcaactttttaaattgctagggggcatttgtttcttggatgataaatttataaccaggaataatgttcc |
305 |
Q |
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| T |
31335036 |
ttgatgtgatttgaaatttaggcatcataaatcaactttttaaattgctagggggcatttgtttcttggatgagaaatttataaccaggaataatgttcc |
31334937 |
T |
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| Q |
306 |
cgggaattaagaagtggaatcttaatccgggtatttaaaaaatatatatattgattaattaatacattcctatgattatttgtaaagatggggaatatgg |
405 |
Q |
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| T |
31334936 |
cgggaattaagaagtggaatcttaatccgggtatttaaaaaa-aaatatattggttaattaatacattcctatgattatttgtaaagatggggaatatgg |
31334838 |
T |
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| Q |
406 |
gtagttactaggtggttacttaag |
429 |
Q |
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| T |
31334837 |
gtagttactaggtggttacttaag |
31334814 |
T |
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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 429
Target Start/End: Complemental strand, 35374197 - 35374024
Alignment:
| Q |
263 |
tttgtttcttggatgataaatttataaccaggaataatgttcccgggaattaagaagtggaatcttaat-ccgggtattt----aaaaaatatatatatt |
357 |
Q |
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|||| ||||||||||| ||||||||| |||||||||| |||| | ||||||||||| |||||||||| ||||||| || |||||| | ||| | |
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| T |
35374197 |
tttgcttcttggatgaaaaatttatacacaggaataattttcctagaaattaagaagtagaatcttaattccgggtacttttcaaaaaaaagtgtatggt |
35374098 |
T |
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| Q |
358 |
gattaattaatacattcctatgattatttgtaaagatggggaatatgggtagttacta--ggtggttacttaag |
429 |
Q |
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| T |
35374097 |
taatatttactacattcttaggattatttgtaaacatggggaatatgggtagttactatgtgtggttacttaag |
35374024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 29816018 - 29815939
Alignment:
| Q |
254 |
tagggggcatttgtttcttggatgataaatttataaccaggaataatgttcccgggaattaagaagtggaatcttaatcc |
333 |
Q |
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| T |
29816018 |
tagggggcgtttgtttcatggatgaaaaatttatgcccaggaataatgttcctaggaattaagagttggaatcttaatcc |
29815939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 44739692 - 44739649
Alignment:
| Q |
290 |
ccaggaataatgttcccgggaattaagaagtggaatcttaatcc |
333 |
Q |
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| T |
44739692 |
ccaggaataatgttcccaggaattaagaagtggaatcttaatcc |
44739649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 29815899 - 29815839
Alignment:
| Q |
369 |
acattcctatgattatttgtaaagatggggaatatgggtagttactaggtggttacttaag |
429 |
Q |
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| T |
29815899 |
acattcctgagattatttgtaaacatagggtatatgggttgtttctaggcggttacttaag |
29815839 |
T |
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