View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4857-Insertion-3 (Length: 860)

Name: NF4857-Insertion-3
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4857-Insertion-3
NF4857-Insertion-3
[»] scaffold0638 (1 HSPs)
scaffold0638 (306-570)||(4044-4305)
[»] chr5 (51 HSPs)
chr5 (381-584)||(43228624-43228827)
chr5 (372-581)||(32953640-32953850)
chr5 (362-584)||(37779595-37779817)
chr5 (372-584)||(16567721-16567934)
chr5 (362-584)||(37607386-37607610)
chr5 (372-558)||(7162056-7162242)
chr5 (381-584)||(1672468-1672671)
chr5 (412-559)||(16667506-16667653)
chr5 (420-577)||(12267430-12267587)
chr5 (412-584)||(15675232-15675404)
chr5 (412-585)||(13942792-13942969)
chr5 (412-585)||(35468820-35468994)
chr5 (420-584)||(21068927-21069092)
chr5 (412-580)||(34846289-34846458)
chr5 (306-584)||(33006824-33007113)
chr5 (412-546)||(17192682-17192816)
chr5 (475-581)||(36234646-36234752)
chr5 (462-584)||(13694766-13694888)
chr5 (412-584)||(15503847-15504007)
chr5 (426-541)||(37654762-37654877)
chr5 (462-583)||(13694982-13695103)
chr5 (451-581)||(9738306-9738436)
chr5 (412-585)||(30248894-30249056)
chr5 (426-541)||(37551932-37552047)
chr5 (475-584)||(34443896-34444006)
chr5 (475-583)||(2476335-2476444)
chr5 (481-586)||(8214694-8214799)
chr5 (475-586)||(42989461-42989574)
chr5 (306-415)||(37654865-37654971)
chr5 (533-585)||(767230-767282)
chr5 (497-584)||(39605924-39606011)
chr5 (306-399)||(1672375-1672465)
chr5 (306-415)||(37552035-37552141)
chr5 (481-546)||(6900742-6900807)
chr5 (306-399)||(14832699-14832789)
chr5 (305-402)||(12267270-12267364)
chr5 (482-584)||(14832854-14832955)
chr5 (306-399)||(35469040-35469130)
chr5 (412-506)||(767283-767373)
chr5 (306-394)||(13942641-13942726)
chr5 (362-399)||(15504086-15504123)
chr5 (362-402)||(6900901-6900941)
chr5 (363-402)||(767432-767471)
chr5 (363-394)||(15675455-15675486)
chr5 (363-402)||(34846480-34846519)
chr5 (668-722)||(1279780-1279834)
chr5 (306-340)||(7161972-7162006)
chr5 (306-340)||(21069214-21069248)
chr5 (306-340)||(43228531-43228565)
chr5 (426-467)||(36234609-36234650)
chr5 (308-337)||(37394940-37394969)
[»] chr4 (43 HSPs)
chr4 (381-584)||(9003488-9003690)
chr4 (362-584)||(9694019-9694241)
chr4 (306-581)||(14044279-14044552)
chr4 (305-569)||(11826935-11827195)
chr4 (412-584)||(25237495-25237668)
chr4 (412-586)||(4728475-4728650)
chr4 (426-584)||(2576091-2576249)
chr4 (480-584)||(50383819-50383924)
chr4 (412-584)||(8901735-8901895)
chr4 (481-588)||(52373666-52373773)
chr4 (420-546)||(46645561-46645687)
chr4 (481-584)||(32828146-32828250)
chr4 (413-583)||(41972462-41972622)
chr4 (412-583)||(49744972-49745131)
chr4 (412-584)||(31364067-31364227)
chr4 (472-584)||(15034545-15034658)
chr4 (475-584)||(32005846-32005955)
chr4 (309-437)||(32828243-32828368)
chr4 (481-583)||(1585642-1585744)
chr4 (412-529)||(10058512-10058629)
chr4 (475-584)||(4552116-4552226)
chr4 (475-584)||(10715585-10715696)
chr4 (475-584)||(10929355-10929466)
chr4 (475-584)||(2017512-2017622)
chr4 (412-586)||(31929055-31929229)
chr4 (426-515)||(2521969-2522057)
chr4 (494-586)||(9809723-9809815)
chr4 (495-585)||(6017046-6017137)
chr4 (509-584)||(36947447-36947522)
chr4 (475-585)||(40969154-40969265)
chr4 (363-402)||(41972384-41972423)
chr4 (306-402)||(52373889-52373982)
chr4 (363-402)||(2521840-2521879)
chr4 (363-402)||(25237723-25237762)
chr4 (306-394)||(46645746-46645831)
chr4 (363-399)||(4728696-4728732)
chr4 (307-402)||(10058651-10058743)
chr4 (364-399)||(10715794-10715829)
chr4 (364-399)||(10929564-10929599)
chr4 (363-402)||(31364249-31364288)
chr4 (363-402)||(50100005-50100044)
chr4 (306-340)||(4552379-4552413)
chr4 (309-338)||(43003075-43003104)
[»] chr7 (33 HSPs)
chr7 (309-584)||(25688102-25688375)
chr7 (376-584)||(5991396-5991602)
chr7 (362-584)||(30852275-30852484)
chr7 (372-581)||(22206658-22206868)
chr7 (372-581)||(22227871-22228081)
chr7 (372-537)||(7873192-7873357)
chr7 (412-584)||(41759632-41759804)
chr7 (412-584)||(26722962-26723134)
chr7 (412-584)||(28694064-28694236)
chr7 (412-584)||(35300452-35300625)
chr7 (412-580)||(19377319-19377486)
chr7 (414-529)||(3012284-3012399)
chr7 (479-584)||(21932857-21932963)
chr7 (428-529)||(5850707-5850808)
chr7 (483-569)||(815068-815154)
chr7 (412-584)||(38129017-38129186)
chr7 (412-489)||(23704493-23704570)
chr7 (412-509)||(4843298-4843395)
chr7 (306-402)||(3012456-3012549)
chr7 (412-473)||(21688145-21688206)
chr7 (306-394)||(22206574-22206659)
chr7 (372-473)||(38991149-38991245)
chr7 (412-477)||(42439598-42439663)
chr7 (500-584)||(41862419-41862503)
chr7 (306-402)||(814861-814954)
chr7 (492-536)||(42439666-42439710)
chr7 (363-402)||(4843454-4843493)
chr7 (412-459)||(21932803-21932850)
chr7 (363-394)||(26722901-26722932)
chr7 (306-340)||(19400264-19400298)
chr7 (306-339)||(6113587-6113620)
chr7 (635-720)||(14088691-14088775)
chr7 (635-720)||(14398709-14398793)
[»] chr3 (31 HSPs)
chr3 (304-584)||(26278289-26278565)
chr3 (362-584)||(53987800-53988011)
chr3 (365-581)||(35077151-35077368)
chr3 (362-584)||(9600287-9600497)
chr3 (420-585)||(41218403-41218569)
chr3 (414-584)||(37516567-37516737)
chr3 (412-546)||(7500919-7501053)
chr3 (623-791)||(8175631-8175796)
chr3 (412-581)||(33179148-33179306)
chr3 (412-584)||(53651835-53651995)
chr3 (412-584)||(26371045-26371218)
chr3 (475-582)||(14461007-14461111)
chr3 (475-584)||(44047520-44047630)
chr3 (420-578)||(41358646-41358805)
chr3 (475-584)||(25391899-25392009)
chr3 (475-584)||(12909763-12909866)
chr3 (481-584)||(44625634-44625738)
chr3 (481-579)||(43700235-43700333)
chr3 (793-841)||(8175598-8175646)
chr3 (475-586)||(41199965-41200077)
chr3 (475-584)||(28311213-28311323)
chr3 (420-539)||(53068224-53068331)
chr3 (501-586)||(38239388-38239473)
chr3 (475-584)||(47511719-47511826)
chr3 (307-394)||(26370931-26371015)
chr3 (306-399)||(28311420-28311510)
chr3 (306-402)||(37516761-37516854)
chr3 (363-399)||(33179034-33179070)
chr3 (363-399)||(41218297-41218333)
chr3 (306-340)||(53988031-53988065)
chr3 (502-584)||(54845987-54846069)
[»] chr8 (23 HSPs)
chr8 (306-584)||(38214689-38214953)
chr8 (381-584)||(27321843-27322034)
chr8 (420-584)||(39431694-39431859)
chr8 (626-722)||(30794382-30794477)
chr8 (413-584)||(36406514-36406686)
chr8 (412-582)||(13243025-13243185)
chr8 (412-583)||(34282921-34283081)
chr8 (412-586)||(24964961-24965124)
chr8 (441-584)||(8968260-8968404)
chr8 (451-580)||(3384082-3384211)
chr8 (412-585)||(28927989-28928151)
chr8 (475-586)||(21138133-21138245)
chr8 (412-545)||(31500855-31500985)
chr8 (309-399)||(27321753-27321840)
chr8 (305-399)||(28928197-28928288)
chr8 (795-841)||(30794290-30794336)
chr8 (469-569)||(12478081-12478181)
chr8 (7-54)||(13820495-13820543)
chr8 (363-399)||(34282802-34282838)
chr8 (307-394)||(36406378-36406462)
chr8 (665-720)||(14051246-14051301)
chr8 (498-584)||(43843107-43843193)
chr8 (508-570)||(376380-376442)
[»] chr6 (25 HSPs)
chr6 (451-591)||(28614434-28614575)
chr6 (412-584)||(9046939-9047111)
chr6 (412-584)||(9695975-9696147)
chr6 (372-581)||(14938894-14939092)
chr6 (372-584)||(2960615-2960816)
chr6 (471-584)||(34188721-34188835)
chr6 (412-584)||(2836224-2836396)
chr6 (626-791)||(22258274-22258436)
chr6 (475-584)||(5582407-5582516)
chr6 (412-536)||(15528914-15529038)
chr6 (412-584)||(10397816-10397977)
chr6 (412-584)||(23663783-23663944)
chr6 (482-586)||(339266-339369)
chr6 (412-536)||(15122011-15122135)
chr6 (420-581)||(34249045-34249195)
chr6 (412-496)||(2941230-2941314)
chr6 (793-841)||(22258241-22258289)
chr6 (412-584)||(1781046-1781207)
chr6 (362-399)||(28614345-28614382)
chr6 (313-399)||(9696193-9696276)
chr6 (363-396)||(31200099-31200132)
chr6 (363-399)||(2836109-2836145)
chr6 (307-394)||(10397698-10397782)
chr6 (363-394)||(1780985-1781016)
chr6 (363-402)||(31188254-31188293)
[»] chr1 (34 HSPs)
chr1 (412-584)||(14727248-14727421)
chr1 (306-584)||(31844529-31844817)
chr1 (306-585)||(4773936-4774199)
chr1 (412-584)||(8239210-8239384)
chr1 (412-585)||(6331605-6331777)
chr1 (475-583)||(44238934-44239042)
chr1 (412-543)||(48940440-48940571)
chr1 (481-584)||(49898345-49898449)
chr1 (475-584)||(6802175-6802284)
chr1 (412-584)||(27584037-27584198)
chr1 (412-584)||(27460626-27460787)
chr1 (475-585)||(25007393-25007504)
chr1 (412-584)||(24745334-24745503)
chr1 (412-546)||(25011560-25011682)
chr1 (475-555)||(4642145-4642225)
chr1 (475-546)||(9527014-9527085)
chr1 (412-585)||(24645983-24646144)
chr1 (475-585)||(37154065-37154176)
chr1 (475-584)||(44305342-44305452)
chr1 (497-584)||(4163372-4163460)
chr1 (475-584)||(11647071-11647180)
chr1 (472-581)||(33469013-33469121)
chr1 (497-584)||(37574864-37574951)
chr1 (306-399)||(14727467-14727557)
chr1 (498-584)||(26686524-26686610)
chr1 (475-580)||(33169357-33169462)
chr1 (481-540)||(1428461-1428520)
chr1 (363-402)||(4641979-4642018)
chr1 (363-399)||(1428361-1428397)
chr1 (307-394)||(33468860-33468944)
chr1 (364-399)||(27460816-27460851)
chr1 (305-335)||(4163556-4163586)
chr1 (515-577)||(41751909-41751971)
chr1 (306-340)||(42817789-42817823)
[»] scaffold0021 (2 HSPs)
scaffold0021 (421-584)||(109332-109494)
scaffold0021 (426-507)||(112255-112333)
[»] chr2 (28 HSPs)
chr2 (412-546)||(25562893-25563027)
chr2 (412-586)||(34756608-34756783)
chr2 (480-584)||(304202-304307)
chr2 (412-586)||(13203696-13203859)
chr2 (475-584)||(33909416-33909525)
chr2 (412-580)||(22572724-22572880)
chr2 (475-584)||(2475753-2475863)
chr2 (498-584)||(4570577-4570663)
chr2 (412-546)||(6799909-6800031)
chr2 (412-584)||(41114893-41115054)
chr2 (412-543)||(18299166-18299285)
chr2 (421-549)||(17148748-17148864)
chr2 (475-582)||(41010409-41010516)
chr2 (475-569)||(42152602-42152696)
chr2 (486-567)||(27701998-27702079)
chr2 (414-536)||(12000502-12000613)
chr2 (306-399)||(29257504-29257594)
chr2 (363-400)||(2475943-2475980)
chr2 (535-584)||(15651169-15651218)
chr2 (412-473)||(15651238-15651299)
chr2 (363-399)||(17148934-17148970)
chr2 (363-399)||(18299084-18299120)
chr2 (363-399)||(41010650-41010686)
chr2 (363-402)||(17249465-17249504)
chr2 (420-467)||(29257403-29257450)
chr2 (306-340)||(303979-304013)
chr2 (362-396)||(13203908-13203942)
chr2 (364-394)||(45444396-45444426)
[»] scaffold0108 (1 HSPs)
scaffold0108 (475-584)||(21075-21183)
[»] scaffold0075 (2 HSPs)
scaffold0075 (480-582)||(6843-6946)
scaffold0075 (480-585)||(11455-11559)
[»] scaffold0618 (2 HSPs)
scaffold0618 (306-399)||(1833-1923)
scaffold0618 (420-467)||(1732-1779)


Alignment Details
Target: scaffold0638 (Bit Score: 170; Significance: 9e-91; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 306 - 570
Target Start/End: Complemental strand, 4305 - 4044
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatc 405  Q
    |||||||||||||| ||||||||||||| ||||||       |||||  |||||   |||||||||||||||||||||||||||||||| || |||||||    
T  4305 cagtggcggagccataaattttatagagcctgggcaaaaaaattatcgcaaaat---gttacttccttcctgcgaataatttcacatttcctacggaatc 4209  T
Q  406 tgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagta 505  Q
    ||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  4208 tgcaggaaatcctgggcaaaatctgcaggaaatgtgtttcctacggaatttacataaacatccgcaggtaaattcgcaggaaaagctaaaagttctagta 4109  T
Q  506 atggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggggg 570  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4108 atggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctaactggggg 4044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 8e-85; HSPs: 51)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 381 - 584
Target Start/End: Original strand, 43228624 - 43228827
Alignment:
Q  381 ataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattc 480  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |    
T  43228624 ataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaacatccgcaggtaaatcc 43228723  T
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||    
T  43228724 gtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagctgggggtggctccgcc 43228823  T
Q  581 cctg 584  Q
    ||||    
T  43228824 cctg 43228827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 372 - 581
Target Start/End: Original strand, 32953640 - 32953850
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||    
T  32953640 ttcctgcagataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctacggaatttacataaaaatttgca 32953739  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-ggggg 570  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  32953740 ggtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagctgggggg 32953839  T
Q  571 tggctccgccc 581  Q
    |||||||||||    
T  32953840 tggctccgccc 32953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 362 - 584
Target Start/End: Complemental strand, 37779817 - 37779595
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacata 461  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||  | |||||||||||||    
T  37779817 tgttacttccttccagcgaataatttcacatttcctgcggaatctgcaggaaatcctagacaaaatctgcaggaaatgtgtttcatacggaatttacata 37779718  T
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    || ||  |||||||||| ||||| ||||  |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  37779717 aatattcgcaggtaaatccgcagaaaaaactaaaagttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggct 37779618  T
Q  562 agctgggggtggctccgcccctg 584  Q
    |||||||||||||||||||||||    
T  37779617 agctgggggtggctccgcccctg 37779595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 372 - 584
Target Start/End: Complemental strand, 16567934 - 16567721
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| |||  |||    
T  16567934 ttcctgcggataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgtaggaaatgtgtttcctgcgaaatttacataacaattcgca 16567835  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-gggg 570  Q
    ||||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  16567834 ggtaaatccgcaagaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggggg 16567735  T
Q  571 tggctccgcccctg 584  Q
    ||||||||||||||    
T  16567734 tggctccgcccctg 16567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 362 - 584
Target Start/End: Complemental strand, 37607610 - 37607386
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacata 461  Q
    |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||  | |||||||||||||    
T  37607610 tgttacttccttccagcaaataatttcacatttcctgcggaatctgcaggaaatcctagacaaaatctgcaggaaatgtgtttcatacggaatttacata 37607511  T
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagt--tctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccagg 559  Q
    || || ||||||||||| ||||| ||||  |||||||  ||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  37607510 aatatttgcaggtaaatccgcagaaaaaactaaaagttctctcgtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccagg 37607411  T
Q  560 ctagctgggggtggctccgcccctg 584  Q
    |||||||||||||||||||||||||    
T  37607410 ctagctgggggtggctccgcccctg 37607386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 372 - 558
Target Start/End: Original strand, 7162056 - 7162242
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||  ||    
T  7162056 ttcctgtggataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgtggaatttacataaaaatcctca 7162155  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccag 558  Q
    ||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7162156 ggtaaatccgcaggaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccag 7162242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 381 - 584
Target Start/End: Original strand, 1672468 - 1672671
Alignment:
Q  381 ataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattc 480  Q
    |||||||||||||| ||  |||||||| |||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||||||  |||||||||| |    
T  1672468 ataatttcacatttcctatggaatctgtaggaaatcctaggcaaaatctgcagaaaatatgtttcctgcggaatgtacataaaaattcgcaggtaaatcc 1672567  T
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    |||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1672568 gcaggaaaggataaaagttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagctgggggtggctccgcc 1672667  T
Q  581 cctg 584  Q
    ||||    
T  1672668 cctg 1672671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 412 - 559
Target Start/End: Original strand, 16667506 - 16667653
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  16667506 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaagttctagtaatggct 16667605  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccagg 559  Q
    || ||||||||||||||| ||||||||||| |||| ||||||||||||    
T  16667606 ggacttgctacaaagaaagttggagctgagtctgggctagtgcccagg 16667653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 420 - 577
Target Start/End: Original strand, 12267430 - 12267587
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| |||| ||||||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||| ||| |||||||    
T  12267430 ggcaaaatctacaggaaatgtgtttcttgcggaatttacataaaaatccgcaggtaaatccacaggaaaagctaaaagttctagtaattgctaggcttgc 12267529  T
Q  520 tacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctcc 577  Q
    |||||||||| |||||||| ||||| || ||||||||| ||||| |||||||||||||    
T  12267530 tacaaagaaagttggagctaagcctagattagtgcccaagctagttgggggtggctcc 12267587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 15675404 - 15675232
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||| || |||||||||| ||||| ||||||||||| |||||||||||| |    
T  15675404 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatccgcagaaaaagttaaaaattctagtaatggtt 15675305  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||| |||| ||||||||| || |||| |||||||| |    ||||||||||||||||||||||||||||||||    
T  15675304 gggtttgcaacaaagaaagttagagccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 15675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 412 - 585
Target Start/End: Original strand, 13942792 - 13942969
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtg---tttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatg 508  Q
    ||||||| ||||| ||||||||||||||||   |||| || ||||| |||| ||||||||||||||||||  | |||||||| | ||||||||||||| |    
T  13942792 aaatccttggcaaaatctgcaggaaatgtggtgtttattgtggaatctacacaaaaatctgcaggtaaatcggtaggaaaagctcaaagttctagtaaag 13942891  T
Q  509 gctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg-ggtggctccgcccctga 585  Q
    |||||| |||||||||||||| ||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  13942892 gctgggtttgctacaaagaaagttggacctgagcctgggctagtgcccaggctagttgggaggtggctccgcccctga 13942969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 412 - 585
Target Start/End: Complemental strand, 35468994 - 35468820
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaag-ttaaaagttctagtaatggc 510  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||  |||| ||||| ||||| | |||| |||||| |||||     
T  35468994 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagaaaaatccgcagaaaaagctaaaaaattctagcaatggt 35468895  T
Q  511 tgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctga 585  Q
    ||||||||||||||||||| ||||||| |||||||| |    |||||||||||||||||||||||||||||||||    
T  35468894 tgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtggctccgcccctga 35468820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 420 - 584
Target Start/End: Complemental strand, 21069092 - 21068927
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| |||||||||||||||||||  |||||||| |||| ||||||  |||||||||| ||||||||| | ||||| |||||||||||| ||||||| |    
T  21069092 ggcaaaatctgcaggaaatgtgtttcttgcggaatatacacaaaaatgcgcaggtaaatccgcaggaaaggctaaaaattctagtaatggttgggcttac 21068993  T
Q  520 tacaaagaaaattggagctgagcctggactagtgcccaggctagctgggg-gtggctccgcccctg 584  Q
    |||||||||| || ||| ||||||||  |||||||||||||||||||||| |||||||||||||||    
T  21068992 tacaaagaaagttagagttgagcctgagctagtgcccaggctagctggggtgtggctccgcccctg 21068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 412 - 580
Target Start/End: Complemental strand, 34846458 - 34846289
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||| ||||| |||||||||||| |    
T  34846458 aaatccttggcaaaatctgtaggaaatgtgtttactgcggaatttacacaaaaatccggaggtaaatccgcaggataagctaaaaattctagtaatggtt 34846359  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcc 580  Q
     | ||||||||||||||| ||||||| |||||||| |    ||||||||||||| |||||||||||||||    
T  34846358 tgacttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcc 34846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 306 - 584
Target Start/End: Complemental strand, 33007113 - 33006824
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga-at 404  Q
    ||||||||||||||| |||||||||||||||||||       |||||  ||||    |||||||||||||||||||||||||||||||| || |||| ||    
T  33007113 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacatttcctacggatat 33007017  T
Q  405 -------ctgcag----gaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagtta 493  Q
           |||| |     ||||||| ||||| ||||||||||||||||||| || ||||||||||| ||||||| |||||||||| ||||||||||| ||    
T  33007016 atctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaaaatccgcaggtaaatccgcaggaaaagcta 33006917  T
Q  494 aaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct--gggggtggctccgcccctg 584  Q
    |||  | ||||||||| |||| |||||||||||||| ||||||| |||||||| |    |||||||||||||  |||||||||||| ||||||    
T  33006916 aaaaatttagtaatggttgggtttgctacaaagaaagttggagccgagcctgggcattagcccaggctagctgggggggtggctcctcccctg 33006824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 412 - 546
Target Start/End: Original strand, 17192682 - 17192816
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| | ||| ||||||||||||||| ||| |||||||||| ||| ||||||| || ||||||| |||||||| || ||||||||||||||||||||    
T  17192682 aaatccttgacaaaatctgcaggaaatgtatttcctgcggaattgacacaaaaatccgccggtaaatccgcaggaagagctaaaagttctagtaatggct 17192781  T
Q  512 gggcttgctacaaagaaaattggagctgagcctgg 546  Q
    | |||||||||||||||| ||||||||||||||||    
T  17192782 gagcttgctacaaagaaagttggagctgagcctgg 17192816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 475 - 581
Target Start/End: Original strand, 36234646 - 36234752
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||    
T  36234646 aaatccgcatgaaaagttaaaagttctaataatggctgggcttgctacaaagaaaattggagctgagtctgggctagtgtccaggctaactgggggtggc 36234745  T
Q  575 tccgccc 581  Q
    |||||||    
T  36234746 tccgccc 36234752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 462 - 584
Target Start/End: Complemental strand, 13694888 - 13694766
Alignment:
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    |||||| |||| ||||| | |||||||||  | ||||||||||||||| ||||||||||||||||||| ||| || ||||||||| ||||||||||||||    
T  13694888 aaaatccgcagataaatccacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggctagtgcccaggct 13694789  T
Q  562 agctgggggtggctccgcccctg 584  Q
    |||||||||||||||||||||||    
T  13694788 agctgggggtggctccgcccctg 13694766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 15504007 - 15503847
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||| ||||||||| |||||||            ||||||||||| ||||| |||||||||||| |    
T  15504007 aaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggtt 15503920  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
     ||||||||||||||||| ||| || ||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  15503919 aggcttgctacaaagaaatttgaaggtgagcctgggctagtgcccagactagcttggggtggctccgcccctg 15503847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 426 - 541
Target Start/End: Complemental strand, 37654877 - 37654762
Alignment:
Q  426 atctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaa 525  Q
    ||||||||||||||||||| ||  ||||||||||||| |||  |||||||||| ||||||||||| |||||||||||||||| ||||| ||||||| |||    
T  37654877 atctgcaggaaatgtgtttcctatggaatttacataacaattcgcaggtaaatccgcaggaaaagataaaagttctagtaatagctggacttgctagaaa 37654778  T
Q  526 gaaaattggagctgag 541  Q
    ||||||||||||||||    
T  37654777 gaaaattggagctgag 37654762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 462 - 583
Target Start/End: Complemental strand, 13695103 - 13694982
Alignment:
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    ||||||||||||||||| | |||||||||  | ||||||||||||||| ||  ||||||||||||||| ||| |||||||||||  ||||||||||||||    
T  13695103 aaaatctgcaggtaaatccacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagctgagcctgagctagtgcccaggct 13695004  T
Q  562 agctgggggtggctccgcccct 583  Q
    |||| |||||||||||||||||    
T  13695003 agctaggggtggctccgcccct 13694982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 451 - 581
Target Start/End: Complemental strand, 9738436 - 9738306
Alignment:
Q  451 gaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggacta 550  Q
    ||||||||| |||||||||||||||||| ||||||||| |  | ||||||||||||||| |||||||||| |||||||| | | ||||||| | || |||    
T  9738436 gaatttacacaaaaatctgcaggtaaatccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagtagaagctgagtcagggcta 9738337  T
Q  551 gtgcccaggctagctgggggtggctccgccc 581  Q
    |||| ||  ||||||||||||||||||||||    
T  9738336 gtgcacaaactagctgggggtggctccgccc 9738306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 412 - 585
Target Start/End: Complemental strand, 30249056 - 30248894
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||| ||||| ||||| |||||||||| | |    
T  30249056 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcagaaaaagctaaaaattctagtaatagtt 30248969  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctga 585  Q
    |||||||||||||||||| ||||||| |||||||| |    ||||||||||||| ||||||||||||||||||||    
T  30248968 gggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcccctga 30248894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 426 - 541
Target Start/End: Complemental strand, 37552047 - 37551932
Alignment:
Q  426 atctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaa 525  Q
    |||| |||||||||||||| ||  | ||||||||||| |||  |||||||| | ||||||||||| |||||||||||||||| ||||| ||||||| |||    
T  37552047 atctacaggaaatgtgtttcctatgaaatttacataacaattcgcaggtaactccgcaggaaaagataaaagttctagtaatagctggacttgctagaaa 37551948  T
Q  526 gaaaattggagctgag 541  Q
    ||||||||||||||||    
T  37551947 gaaaattggagctgag 37551932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 34444006 - 34443896
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| || || ||||||||||||  |||||||||||||||||| |||||||||||||||| |    ||||||||||||| ||||||||    
T  34444006 aaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 34443907  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  34443906 ctccgcccctg 34443896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 583
Target Start/End: Complemental strand, 2476444 - 2476335
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  || |||||||||||||||||||||||||||||||| |    ||||||||||||| ||||| ||    
T  2476444 aaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggcactagcccaggctagctggggggagg 2476345  T
Q  574 ctccgcccct 583  Q
    ||||||||||    
T  2476344 ctccgcccct 2476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 586
Target Start/End: Original strand, 8214694 - 8214799
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    |||||||||| ||||| |||||||||||||| | |||| |||||| ||| |||||||| || |||||||||||| |||||||||||| ||||| ||||||    
T  8214694 gcaggaaaagataaaacttctagtaatggctagacttgttacaaaaaaagttggagctaagtctggactagtgctcaggctagctggaggtggttccgcc 8214793  T
Q  581 cctgat 586  Q
     |||||    
T  8214794 tctgat 8214799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 586
Target Start/End: Complemental strand, 42989574 - 42989461
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtg-cccaggctagct-gggggtg 572  Q
    |||||||||| |||||  | |||||||||||||||||||||||||  |||||||| | | |||||| ||||| |||||| |||||||||||| |||||||    
T  42989574 aaattcgcagaaaaagcgagaagttctagtaatggctgggcttgcctcaaagaaagtagaagctgatcctgggctagtgccccaggctagctggggggtg 42989475  T
Q  573 gctccgcccctgat 586  Q
    ||||||||||||||    
T  42989474 gctccgcccctgat 42989461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 306 - 415
Target Start/End: Complemental strand, 37654971 - 37654865
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatc 405  Q
    |||||| ||||||||||||||||||||| ||||||       ||||   |||||   |||||||||||||||||||||||||||||||| ||||||||||    
T  37654971 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaat---gttacttccttcctgcgaataatttcacatttcctgcggaatc 37654875  T
Q  406 tgcaggaaat 415  Q
    ||||||||||    
T  37654874 tgcaggaaat 37654865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 533 - 585
Target Start/End: Complemental strand, 767282 - 767230
Alignment:
Q  533 ggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctga 585  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  767282 ggagctgagcctgggctagtgcccaggctagctgggggtggctccgcccctga 767230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 497 - 584
Target Start/End: Original strand, 39605924 - 39606011
Alignment:
Q  497 gttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||| |||||| ||| |||| |||||||||| | | ||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  39605924 gttctaataatggatggacttgttacaaagaaagtagaagctgagtctgggctagtgctcaggctagctgggggtggctccgcccctg 39606011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 1672375 - 1672465
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||| ||||||       |||||  |||||   |||||||||||||||||||||||||||||||||||||    
T  1672375 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaat---gttacttccttcctgcgaataatttcacattttctgc 1672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 415
Target Start/End: Complemental strand, 37552141 - 37552035
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatc 405  Q
    |||||| ||||||||||||||||||||| ||||||       ||||   |||||   |||||||||||||||||||||||||||||||| ||||||||||    
T  37552141 cagtggtggagccagaaattttatagagcctgggcaaaaaaattattgcaaaat---gttacttccttcctgcgaataatttcacatttcctgcggaatc 37552045  T
Q  406 tgcaggaaat 415  Q
    | ||||||||    
T  37552044 tacaggaaat 37552035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 481 - 546
Target Start/End: Complemental strand, 6900807 - 6900742
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg 546  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||    
T  6900807 gcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagttgaggctgg 6900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 14832699 - 14832789
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||||||       |||||  |||| |   ||||||||||||||||||||||||||||||| ||||    
T  14832699 cagtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaaca---ttacttccttcctgcgaataatttcacatttcctgc 14832789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 12267270 - 12267364
Alignment:
Q  305 acagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||||||| ||||||||||| ||||||       |||||  ||||    ||||||||||||||| ||||||||||||||||||||||||    
T  12267270 acagtggcggagccagacattttatagagcctgggcaaaaagtttatcgcaaaac---gttacttccttcctgtgaataatttcacattttctgcgga 12267364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 584
Target Start/End: Original strand, 14832854 - 14832955
Alignment:
Q  482 caggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg--actagtgcccaggctagctgggggtggctccgc 579  Q
    ||||||||| ||||| || ||||||||| ||| ||||||||||| ||| ||||||| ||||||||  ||||  ||||||  |||||||||||| ||||||    
T  14832854 caggaaaagataaaaattttagtaatggttggacttgctacaaa-aaagttggagccgagcctgggtacta--gcccagcttagctgggggtgactccgc 14832950  T
Q  580 ccctg 584  Q
    |||||    
T  14832951 ccctg 14832955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 35469130 - 35469040
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||| ||||||| |||||||||||| ||||||       |||||  |||||   |||||||||||||||||||||||||||||||| ||||    
T  35469130 cagtggctgagccaggaattttatagagcctgggcaaaaaatttatcgcaaaat---gttacttccttcctgcgaataatttcacatttcctgc 35469040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 767373 - 767283
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaa 506  Q
    ||||||| ||||| | ||| ||||||||||||| |||||||||||| | |||||||     |||||| ||||||||||| |||||||||| ||||    
T  767373 aaatccttggcaaaacctgtaggaaatgtgtttcctgcggaatttatacaaaaatc----cgtaaatccgcaggaaaagctaaaagttcttgtaa 767283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 13942641 - 13942726
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    |||||||||||||||||||||||||||| |||||        |||||  ||||    ||||||||||||||||||||||||||||||||    
T  13942641 cagtggcggagccagaaattttatagagcctgggtaaaaaaattatcgcaaaac---gttacttccttcctgcgaataatttcacattt 13942726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 15504123 - 15504086
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15504123 tgttacttccttcctgcgaataatttcacatttcctgc 15504086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 6900941 - 6900901
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  6900941 tgttacttccttcatgcgaataatttcacatttcctgcgga 6900901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 767471 - 767432
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  767471 gttactttcttcctgcgaataatttctcattttctgcgga 767432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 394
Target Start/End: Complemental strand, 15675486 - 15675455
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattt 394  Q
    ||||||||||||||||||||||||||||||||    
T  15675486 gttacttccttcctgcgaataatttcacattt 15675455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 34846519 - 34846480
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||||||||||||||||||||| || ||||    
T  34846519 gttacttccttcctgcgaataatttcacatttcctacgga 34846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 1279780 - 1279834
Alignment:
Q  668 ctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccacct 722  Q
    |||||||| ||||| |||||||  ||||||||| |||||||||||||| ||||||    
T  1279780 ctcaatcgatactttctttatatatgacccaactcaatagcccattaacccacct 1279834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 7161972 - 7162006
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    |||||||||||||||||||||||||||| ||||||    
T  7161972 cagtggcggagccagaaattttatagagcctgggc 7162006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 21069248 - 21069214
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    |||||| ||||||||||||||||||||||||||||    
T  21069248 cagtggtggagccagaaattttatagagtctgggc 21069214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 43228531 - 43228565
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    |||||||||||||||||||||||||||| ||||||    
T  43228531 cagtggcggagccagaaattttatagagcctgggc 43228565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 36234609 - 36234650
Alignment:
Q  426 atctgcaggaaatgtgtttactgcggaatttacataaaaatc 467  Q
    |||||||||||||| |||| |||| |||||||||||||||||    
T  36234609 atctgcaggaaatgcgtttcctgctgaatttacataaaaatc 36234650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 337
Target Start/End: Complemental strand, 37394969 - 37394940
Alignment:
Q  308 gtggcggagccagaaattttatagagtctg 337  Q
    ||||||||||||||||||||||||||||||    
T  37394969 gtggcggagccagaaattttatagagtctg 37394940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 5e-80; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 381 - 584
Target Start/End: Complemental strand, 9003690 - 9003488
Alignment:
Q  381 ataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattc 480  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||| |    
T  9003690 ataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa-tccgcaggtaaatcc 9003592  T
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    | || |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9003591 gaagaaaaagttaaaagttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggctagctgggggtggctacgcc 9003492  T
Q  581 cctg 584  Q
    ||||    
T  9003491 cctg 9003488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 362 - 584
Target Start/End: Complemental strand, 9694241 - 9694019
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacata 461  Q
    ||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  9694241 tgttatttccttcttgcgaataatttgacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacata 9694142  T
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    ||| || |||  ||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  9694141 aaattccgcaaataaatccgcagaaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcacaggct 9694042  T
Q  562 agctgggggtggctccgcccctg 584  Q
    |||||| |||| |||||||||||    
T  9694041 agctggaggtgactccgcccctg 9694019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 306 - 581
Target Start/End: Complemental strand, 14044552 - 14044279
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatc 405  Q
    ||||||||||||||||||||||||||||| |||||       |||||  |||||   ||||| ||||||||| |||||||||||||||| |||||||||     
T  14044552 cagtggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaat---gttacctccttcctgagaataatttcacatttcctgcggaata 14044456  T
Q  406 tgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagta 505  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||||| ||||| || | |||    
T  14044455 tgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaattcgcaggtaaatccgcaggaaaagctaaaaattttcgta 14044356  T
Q  506 atggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgccc 581  Q
    |||||| ||||||||||||||||||||||||||||| |||  ||||||||||  ||||||| |||||||||||||||    
T  14044355 atggcttggcttgctacaaagaaaattggagctgagactgagctagtgcccaaactagctggggggtggctccgccc 14044279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 305 - 569
Target Start/End: Original strand, 11826935 - 11827195
Alignment:
Q  305 acagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaat 404  Q
    ||||||||| ||||||||||||||||||| || |||       ||||| ||||||   |||||||||||||||||||||||||||||||| || ||||||    
T  11826935 acagtggcgaagccagaaattttatagagcctaggcaaaaaaattatcgtaaaat---gttacttccttcctgcgaataatttcacatttcctacggaat 11827031  T
Q  405 ctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagt 504  Q
    |||||||||||||||||||| |||| |||||||||| ||| ||||| |||||||||||||||||||| |||||| ||||| ||||| |||||||||||||    
T  11827032 ctgcaggaaatcctaggcaaaatctacaggaaatgtattt-ctgcgaaatttacataaaaatctgcaagtaaatccgcagaaaaagctaaaagttctagt 11827130  T
Q  505 aatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggg 569  Q
    ||||||| | ||| |||||||||||||||||||||||||||| ||||| |||| |||| ||||||    
T  11827131 aatggctagacttactacaaagaaaattggagctgagcctgggctagtacccatgctaactgggg 11827195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 25237668 - 25237495
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||| || |||||||||| ||||| ||| | ||||||||||||||||| ||    
T  25237668 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaattccgcaggtaaatccgcagaaaacgctaaaagttctagtaatgact 25237569  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgcccctg 584  Q
    || ||| ||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  25237568 ggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagctggggggtggctccgcccctg 25237495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 412 - 586
Target Start/End: Complemental strand, 4728650 - 4728475
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||  ||||||| |||||||||| ||||||||||| ||||| |||||||||||| |    
T  4728650 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttactcaaaaatccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggtt 4728551  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctgat 586  Q
     ||||||||||||||||| ||||||| ||| |||| |    ||||| ||||||| |||||||||||||||||||||    
T  4728550 tggcttgctacaaagaaagttggagccgagtctgggcactagcccaagctagctggggggtggctccgcccctgat 4728475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 426 - 584
Target Start/End: Complemental strand, 2576249 - 2576091
Alignment:
Q  426 atctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaa 525  Q
    ||||||||||||||||||| |||||||||||| | ||||||  ||| |||||||||||| ||||| ||||| |||| ||||||| |||||||||||||||    
T  2576249 atctgcaggaaatgtgtttcctgcggaatttatacaaaaattcgcaagtaaattcgcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaa 2576150  T
Q  526 gaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||| |||||||||||||||| |    |||||| |||||||||| ||||||||||||||    
T  2576149 gaaagttggagctgagcctgggcactagcccagactagctggggttggctccgcccctg 2576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 480 - 584
Target Start/End: Complemental strand, 50383924 - 50383819
Alignment:
Q  480 cgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccg 578  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  50383924 cgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggccagtgcccaggctagctggggggtggctccg 50383825  T
Q  579 cccctg 584  Q
    ||||||    
T  50383824 cccctg 50383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 8901895 - 8901735
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||            |||||||||||||||||  |||||||    
T  8901895 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggagtttacacaaaaatctgcagg------------aaaagttaaaagttctaaaaatggct 8901808  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||| | |||||| ||||||||||||||||    
T  8901807 gggctttctacaaagaaagttggagctgagcctgggctagtgcccagacaagctggcggtggctccgcccctg 8901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 481 - 588
Target Start/End: Complemental strand, 52373773 - 52373666
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    |||| ||||||||||||||||||||||| ||| |||| ||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  52373773 gcagaaaaagttaaaagttctagtaatgactgagcttactataaagaaagttggagctgagcctgggctagtgcccagactagctgggggtggctccgcc 52373674  T
Q  581 cctgatgt 588  Q
    ||||||||    
T  52373673 cctgatgt 52373666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 420 - 546
Target Start/End: Complemental strand, 46645687 - 46645561
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| ||||||| ||||||||||| |||| ||||||||| ||||||| |||||||||| ||||| ||||| ||||| |||||||||||| |||||||||    
T  46645687 ggcaaaatctgcatgaaatgtgtttcctgcagaatttacacaaaaatccgcaggtaaatccgcagaaaaagctaaaaattctagtaatggttgggcttgc 46645588  T
Q  520 tacaaagaaaattggagctgagcctgg 546  Q
    ||||||| || ||||||||||||||||    
T  46645587 tacaaaggaagttggagctgagcctgg 46645561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 481 - 584
Target Start/End: Complemental strand, 32828250 - 32828146
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggg-gtggctccgc 579  Q
    |||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  32828250 gcaggaaaagctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggtttggctccgc 32828151  T
Q  580 ccctg 584  Q
    |||||    
T  32828150 ccctg 32828146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 413 - 583
Target Start/End: Original strand, 41972462 - 41972622
Alignment:
Q  413 aatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctg 512  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||||||||| |||||||||||||||||| |     
T  41972462 aatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaagttctagtaatggttc 41972549  T
Q  513 ggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct--gggggtggctccgcccct 583  Q
    ||||||||||||||||| ||||||||||||||   ||||||||||| ||||||  ||||||||||||||||||    
T  41972550 ggcttgctacaaagaaagttggagctgagcctaagctagtgcccagcctagctgggggggtggctccgcccct 41972622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 412 - 583
Target Start/End: Complemental strand, 49745131 - 49744972
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||||||| |||||||||| || ||||||||||| |||||||| ||||            ||||| ||||| ||||||||||||||    
T  49745131 aaatccttggcaaaatctgcagaaaatgtgtttcctacggaatttacacaaaaatctacagg------------aaaaggtaaaacttctagtaatggct 49745044  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccct 583  Q
     | |||| || ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  49745043 agacttgttataaagaaagttggagctgagcctggactagtgcccagactagctggggttggctccgcccct 49744972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 31364227 - 31364067
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||||||||  ||||| |||||||||||| |    
T  31364227 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaaactaaaatttctagtaatggtt 31364140  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||  |||||||||||||| ||||||| |||||||| |    ||||||||||||||||||||||||||||||||    
T  31364139 ggatttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 31364067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 472 - 584
Target Start/End: Original strand, 15034545 - 15034658
Alignment:
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-ggggg 570  Q
    |||||||  ||||||||||  ||||||||||||||||| |||||||| |||||||||| ||| |||||||| ||| |||||||||||||||| | |||||    
T  15034545 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctagttgggggg 15034644  T
Q  571 tggctccgcccctg 584  Q
    ||||||||||||||    
T  15034645 tggctccgcccctg 15034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 32005955 - 32005846
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| ||||||||||| ||||| ||||| ||||||  |||||||||||||||||| |||||||||||||||| |    ||||||||||||||||||||||    
T  32005955 aaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggc 32005856  T
Q  575 tccgcccctg 584  Q
    ||||||||||    
T  32005855 tccgcccctg 32005846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 309 - 437
Target Start/End: Complemental strand, 32828368 - 32828243
Alignment:
Q  309 tggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatctgc 408  Q
    ||||||||||||||||||||||| | ||||||       |||||| ||||||   ||||||||||||||| |||||||| |||||| |||||||||||||    
T  32828368 tggcggagccagaaattttatagggcctgggcaaaaaaattatcacaaaata---ttacttccttcctgcaaataattttacatttcctgcggaatctgc 32828272  T
Q  409 aggaaatcctaggcaatatctgcaggaaa 437  Q
    |||||||||||||||| || |||||||||    
T  32828271 aggaaatcctaggcaaaatatgcaggaaa 32828243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 481 - 583
Target Start/End: Complemental strand, 1585744 - 1585642
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    |||||||||| ||||| ||||||||||||  |||||||||||||||||| ||| |||||||||||| |    ||||||||||||||||||||||||||||    
T  1585744 gcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggctagctgggggtggctccgcc 1585645  T
Q  581 cct 583  Q
    |||    
T  1585644 cct 1585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 412 - 529
Target Start/End: Complemental strand, 10058629 - 10058512
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| || || |||||| |||||||||||| |||||||||||||| |||| ||  ||||||||| ||| ||||||| ||||| |||| ||||||| |    
T  10058629 aaatccttggtaaaatctgctggaaatgtgtttcctgcggaatttacacaaaattccccaggtaaatccgcgggaaaagctaaaaattctcgtaatggtt 10058530  T
Q  512 gggcttgctacaaagaaa 529  Q
    ||||||||||||||||||    
T  10058529 gggcttgctacaaagaaa 10058512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 4552226 - 4552116
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  |||||||||||||||||| |||||||||||||||| |    ||||||||||||| ||||| ||    
T  4552226 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggggg 4552127  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  4552126 ctccgcccctg 4552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 10715696 - 10715585
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc-tacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtg 572  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||||| |||||||||| ||||||| |||||||| |    ||||||||||||| |||||||    
T  10715696 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtg 10715597  T
Q  573 gctccgcccctg 584  Q
    ||||||||||||    
T  10715596 gctccgcccctg 10715585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 10929466 - 10929355
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc-tacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtg 572  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||||| |||||||||| ||||||| |||||||| |    ||||||||||||| |||||||    
T  10929466 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtg 10929367  T
Q  573 gctccgcccctg 584  Q
    ||||||||||||    
T  10929366 gctccgcccctg 10929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 475 - 584
Target Start/End: Original strand, 2017512 - 2017622
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  | |||||||||||||||| |||||||| ||||||| |    ||||||||||||| ||||||||    
T  2017512 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggcactagcccaggctagctggggggtgg 2017611  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  2017612 ctccgcccctg 2017622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 412 - 586
Target Start/End: Original strand, 31929055 - 31929229
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| || ||||||||||||||||  ||| |||||||||  |||||| |||  ||||| |||||||||||  |    |||||||||||  |    
T  31929055 aaatccttggcaaaatttgcaggaaatgtgtttcttgcagaatttacaataaaatccgcaaataaatccgcaggaaaagcgagggattctagtaatgatt 31929154  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctgat 586  Q
    |||||||||||||||||| |   |||| || || | |||| ||||||||||||||||||||| ||||||| ||||    
T  31929155 gggcttgctacaaagaaagtaaaagctaagtcttggctagcgcccaggctagctgggggtggttccgcccttgat 31929229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 2521969 - 2522057
Alignment:
Q  426 atctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggc 515  Q
    |||| |||||||||||||| ||||||| |||||| ||||||| ||||||||| || ||||||||| ||||||||| ||||||||||||||    
T  2521969 atctacaggaaatgtgtttcctgcggactttacacaaaaatccgcaggtaaa-tcccaggaaaagctaaaagttcaagtaatggctgggc 2522057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 586
Target Start/End: Complemental strand, 9809815 - 9809723
Alignment:
Q  494 aaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctgat 586  Q
    |||||||| ||||||||||| ||||||||||||||| || ||||| |||||||  |||||| ||||| || |||||||||||||||| |||||    
T  9809815 aaagttcttgtaatggctggacttgctacaaagaaagtttgagctaagcctgggttagtgctcaggcaagatgggggtggctccgcctctgat 9809723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 495 - 585
Target Start/End: Complemental strand, 6017137 - 6017046
Alignment:
Q  495 aagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctga 585  Q
    ||||||||||||| |  |||||||||||||||||| | | || ||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  6017137 aagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggctagtgcccatgctagctagggggtggctccgcccctga 6017046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 36947522 - 36947447
Alignment:
Q  509 gctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||||| ||||||||||||||| | |||||||||| ||  |||||||| | ||||||||||| ||||||||||||||    
T  36947522 gctggacttgctacaaagaaagtaggagctgagcttgagctagtgcctaagctagctggggttggctccgcccctg 36947447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 40969265 - 40969154
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggggg-tgg 573  Q
    |||| ||||||||||| ||||| ||||  |||||| ||| ||||||||||||||| ||| |||||||||||  |    |||||||||||||||||| | |    
T  40969265 aaatccgcaggaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaagctgagcctgagcactagcccaggctagctgggggatag 40969166  T
Q  574 ctccgcccctga 585  Q
    ||||||||||||    
T  40969165 ctccgcccctga 40969154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 41972384 - 41972423
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41972384 gttacttccttcctgcgaataatttcacattttctgcgga 41972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 52373982 - 52373889
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||||| |||||||||||||||| ||       |||||  ||||    |||||||||||||||||||||||||||||||| |||||||    
T  52373982 cagtggcggagccaggaattttatagagtctgtgcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacatttcctgcgga 52373889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 2521840 - 2521879
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  2521840 gttacttccttcctgcgaataatttcacatttcctgcgga 2521879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 25237762 - 25237723
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  25237762 gttacttccttcctgcgaataatttcacatttcctgcgga 25237723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 394
Target Start/End: Complemental strand, 46645831 - 46645746
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    ||||||||||||||| ||||||||||||||||||        |||||  ||||    ||||||||||||||||||||||||||||||||    
T  46645831 cagtggcggagccaggaattttatagagtctgggaaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacattt 46645746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 4728732 - 4728696
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4728732 gttacttccttcctgcaaataatttcacattttctgc 4728696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 10058743 - 10058651
Alignment:
Q  307 agtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||| |||||||||||| ||||||       |||||  ||||    |||||||||||||||||||||||||||||||| || ||||    
T  10058743 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacatttcctacgga 10058651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 10715829 - 10715794
Alignment:
Q  364 ttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10715829 ttacttccttcctgcgaataatttcacatttcctgc 10715794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 10929599 - 10929564
Alignment:
Q  364 ttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10929599 ttacttccttcctgcgaataatttcacatttcctgc 10929564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 31364288 - 31364249
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||||||||||||||||||||| || ||||    
T  31364288 gttacttccttcctgcgaataatttcacatttcctacgga 31364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 50100044 - 50100005
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  50100044 gttacttccttcctacgaataatttcacatttcctgcgga 50100005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 4552413 - 4552379
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    ||||||||||||||| |||||||||||||||||||    
T  4552413 cagtggcggagccaggaattttatagagtctgggc 4552379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 43003075 - 43003104
Alignment:
Q  309 tggcggagccagaaattttatagagtctgg 338  Q
    ||||||||||||||||||||||||||||||    
T  43003075 tggcggagccagaaattttatagagtctgg 43003104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 8e-79; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 309 - 584
Target Start/End: Original strand, 25688102 - 25688375
Alignment:
Q  309 tggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatctgc 408  Q
    ||||||||||||||||||||||||| |||||        ||||| ||||||   ||||||||||| ||| |||||||||||||||| |||||||||||||    
T  25688102 tggcggagccagaaattttatagagcctgggtaaaaaaattatcgtaaaat---gttacttcctttctgtgaataatttcacatttcctgcggaatctgc 25688198  T
Q  409 aggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatg 508  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| || |||||||||||  |||||||||| |||||||| ||||||||    
T  25688199 aggaaatcctaggcaaaatctgcaggaaatatgtttcctgcggaatttacataaacatttgcaggtaaatctgcaggaaaagctaaaagttttagtaatg 25688298  T
Q  509 gctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg-ggtggctccgcccctg 584  Q
    |||| |||||||||||||||||||||||||||| |||| ||||| ||||| ||| ||||| ||||||||||||||||    
T  25688299 gctgagcttgctacaaagaaaattggagctgagtctgggctagtacccagactaactgggtggtggctccgcccctg 25688375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 376 - 584
Target Start/End: Original strand, 5991396 - 5991602
Alignment:
Q  376 tgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggta 475  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||   | |||||||    
T  5991396 tgcggataatttcacatttcctgcagaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaa---ccgcaggta 5991492  T
Q  476 aattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggc 574  Q
    ||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  5991493 aatccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggctagtgcccaggctagctggggggtggc 5991592  T
Q  575 tccgcccctg 584  Q
    ||||||||||    
T  5991593 tccgcccctg 5991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 362 - 584
Target Start/End: Complemental strand, 30852484 - 30852275
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacata 461  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  30852484 tgttgcttccttcctgcgaataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgaaggaaatgtgtttcctgcggaatttacata 30852385  T
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    ||| ||            ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  30852384 aaattc------------cgcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcccaggct 30852297  T
Q  562 agctgggggtggctccgcccctg 584  Q
    |||| |||||||||| |||||||    
T  30852296 agct-ggggtggctctgcccctg 30852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 372 - 581
Target Start/End: Original strand, 22206658 - 22206868
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||| |   | |    
T  22206658 ttcctgcggataatctcacatttcctgcggaatctgcaggaaatcctaagtaaaatctgcaggaaatgtgtttcctgcggaatttacataaacactcgta 22206757  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg-gg 570  Q
    ||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  22206758 ggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtgg 22206857  T
Q  571 tggctccgccc 581  Q
    |||||||||||    
T  22206858 tggctccgccc 22206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 372 - 581
Target Start/End: Complemental strand, 22228081 - 22227871
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||| |   | |    
T  22228081 ttcctgcggataatctcacatttcctgcggaatctgcaggaaatcctaagtaaaatctgcaggaaatgtgtttcctgcggaatttacataaacactcgta 22227982  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg-gg 570  Q
    ||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  22227981 ggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtgg 22227882  T
Q  571 tggctccgccc 581  Q
    |||||||||||    
T  22227881 tggctccgccc 22227871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 372 - 537
Target Start/End: Original strand, 7873192 - 7873357
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||| ||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |||    
T  7873192 ttcctgcggataatttcacatttcatgtggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaacccgca 7873291  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagc 537  Q
    ||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  7873292 ggtaaatccgcagaaaaagctaaaagttctagtaatggttgggcttgctacaaagaaaattggagc 7873357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 41759632 - 41759804
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||  ||||||  || ||||||  ||| |||||| ||||||||||||||||||||    
T  41759632 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacaccaaaatccacaagtaaatctgcaagaaaagctaaaagttctagtaatggct 41759731  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41759732 gggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctgggggtggctccgcccctg 41759804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 26722962 - 26723134
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||| ||||| |||||||||||| |    
T  26722962 aaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatccgcaggtaaatccgtaggaaaagctaaaatttctagtaatggtt 26723061  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||  |||||||||| ||| ||||||| |||||||||     ||||||||||||||||||||||||||||||||    
T  26723062 ggatttgctacaaaaaaagttggagccgagcctggaaactagcccaggctagctgggggtggctccgcccctg 26723134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 28694064 - 28694236
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||| ||||| || ||| |||||| |||||||||||||||||     
T  28694064 aaatcctgggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatccgcagctaaatccg-aggcaaagtttaaagttctagtaatggcg 28694162  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggggg-tggctccgcccctg 584  Q
    |  ||||||||||||||| ||||||||||||||||  ||||| |||||||||||||||| ||||| ||||||||    
T  28694163 gaacttgctacaaagaaagttggagctgagcctgggttagtgtccaggctagctgggggatggctacgcccctg 28694236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 35300452 - 35300625
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||||||||||||   ||| |||||||||||||| ||||||| |||||||||| ||||||||||| ||||  ||||||||||||      
T  35300452 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaacattctagtaatggta 35300551  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    |||||||||||||||||| |||||||||||||||| |    ||||||||||||| |||||||||||||||||||    
T  35300552 gggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 35300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 412 - 580
Target Start/End: Complemental strand, 19377486 - 19377319
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||| ||| || |||||||| || ||| ||| ||||||||||  ||| |||||||||||| | ||||||||||||    
T  19377486 aaatccttggcaaaatctgcaggaaatgtatttccttcggaatttccacaaacatccgcaggtaaatctgcaagaaaagttaaaactactagtaatggct 19377387  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    ||  ||| |||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  19377386 ggagttgttacaaagaaagttggagctgagcctgggctagtgcccaagctagct-ggggtggctccgcc 19377319  T

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Target: chr7; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 414 - 529
Target Start/End: Complemental strand, 3012399 - 3012284
Alignment:
Q  414 atcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgg 513  Q
    ||||| ||||| ||||||||||| ||||||| ||||||||| |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||| |||    
T  3012399 atccttggcaaaatctgcaggaagtgtgtttcctgcggaatgtacacaaaaatcggcaggtaaatccgcaggaaaagctaaaagttctagtaatggttgg 3012300  T
Q  514 gcttgctacaaagaaa 529  Q
    ||||||||||||||||    
T  3012299 gcttgctacaaagaaa 3012284  T

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Target: chr7; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 479 - 584
Target Start/End: Original strand, 21932857 - 21932963
Alignment:
Q  479 tcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctcc 577  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||  | ||||||||||||    
T  21932857 tcgcaggaaaagttaaaagttttagtaatggttgggcttgctacaaagaaagttggagttgagcctgggctagtgcccaggctaattggggggtggctcc 21932956  T
Q  578 gcccctg 584  Q
     ||||||    
T  21932957 acccctg 21932963  T

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Target: chr7; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 428 - 529
Target Start/End: Complemental strand, 5850808 - 5850707
Alignment:
Q  428 ctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaaga 527  Q
    ||||||||||||||||| |||| ||||||||| || | ||||||| ||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  5850808 ctgcaggaaatgtgttttctgcagaatttacacaacattctgcagataaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaaga 5850709  T
Q  528 aa 529  Q
    ||    
T  5850708 aa 5850707  T

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Target: chr7; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 483 - 569
Target Start/End: Original strand, 815068 - 815154
Alignment:
Q  483 aggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggg 569  Q
    |||||||| |||||||||||||||||||| |  |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  815068 aggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggctagtgcccaggctaactgggg 815154  T

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Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 38129017 - 38129186
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| || |||||||||||||||| || | ||||||||| ||||||| |||||||||   ||||||||| || |||||| |  || ||| |    
T  38129017 aaatccttggcaaaatatgcaggaaatgtgtttccttcagaatttacacaaaaatccgcaggtaaaactgcaggaaaaatt-aaagttatcatattggtt 38129115  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    || |||||||  |||||| || ||||||||||||   ||||||||| ||||||| ||||||||||||||||||    
T  38129116 ggacttgcta-taagaaagtttgagctgagcctgagttagtgcccatgctagct-ggggtggctccgcccctg 38129186  T

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Target: chr7; HSP #17
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 412 - 489
Target Start/End: Original strand, 23704493 - 23704570
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaa 489  Q
    ||||||| ||||| ||||||||||||||||||| | |||||||||||| |||||||  ||||||||| ||||||||||    
T  23704493 aaatccttggcaaaatctgcaggaaatgtgttttcggcggaatttacacaaaaatccacaggtaaatccgcaggaaaa 23704570  T

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Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 412 - 509
Target Start/End: Complemental strand, 4843395 - 4843298
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatgg 509  Q
    ||||||| ||||| ||||||| |||||||||||  |||||||| |||| ||| ||| | |||||||| || |||||||| |||||||||||| |||||    
T  4843395 aaatccttggcaaaatctgcatgaaatgtgtttcatgcggaatgtacacaaatatccgtaggtaaatccgaaggaaaagctaaaagttctagaaatgg 4843298  T

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Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 3012549 - 3012456
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||||||||||||||||||||||||       ||||   ||||    ||||||||||||||| |||||||||||||||| |||||||    
T  3012549 cagtggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaa---cgttacttccttcctgtgaataatttcacatttcctgcgga 3012456  T

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Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 21688206 - 21688145
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcagg 473  Q
    |||||||  |||| ||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  21688206 aaatccttcgcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcagg 21688145  T

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Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 22206574 - 22206659
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    |||||||||||| ||||||||||||||| ||||||       |||||  |||||   ||||||||||||||||||||||||||||||||    
T  22206574 cagtggcggagcaagaaattttatagagcctgggcaagaaaattatcgcaaaat---gttacttccttcctgcgaataatttcacattt 22206659  T

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Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 372 - 473
Target Start/End: Original strand, 38991149 - 38991245
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    ||||| |||||||||||||||||||||||||  ||     ||||||| ||||| ||||||||||||||||||| |  ||||||||| | ||||||| |||    
T  38991149 ttcctacgaataatttcacattttctgcggatcct-----aaatccttggcaaaatctgcaggaaatgtgtttccaacggaatttatacaaaaatccgca 38991243  T

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Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 412 - 477
Target Start/End: Original strand, 42439598 - 42439663
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaa 477  Q
    ||||||| ||||| |||||||| |||||||||| ||||| |||||||| |||| ||||||||||||    
T  42439598 aaatccttggcaaaatctgcagaaaatgtgtttcctgcgaaatttacacaaaactctgcaggtaaa 42439663  T

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Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 584
Target Start/End: Original strand, 41862419 - 41862503
Alignment:
Q  500 ctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||||||||   ||||| |||||||| | |||||||||  ||| ||||||||||| |||||||||  ||||||||||||||    
T  41862419 ctagtaatggctgaatttgctgcaaagaaagtaggagctgagtatgggctagtgcccagactagctgggtttggctccgcccctg 41862503  T

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Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 814861 - 814954
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||||| |||| ||||||||||||||       |||||  ||||    |||||||| ||||||| |||||||||||||||||||||||    
T  814861 cagtggcggagccaggaattatatagagtctgggcaaaaaaattatcgcaaaac---gttacttcattcctgctaataatttcacattttctgcgga 814954  T

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Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 492 - 536
Target Start/End: Original strand, 42439666 - 42439710
Alignment:
Q  492 taaaagttctagtaatggctgggcttgctacaaagaaaattggag 536  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||    
T  42439666 taaaagttctagtaatggctgagcatgctacaaagaaagttggag 42439710  T

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Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 4843493 - 4843454
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  4843493 gttacttctttcctgcgaataatttcacatttcctgcgga 4843454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 21932803 - 21932850
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttaca 459  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||||||    
T  21932803 aaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatttaca 21932850  T

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Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 394
Target Start/End: Original strand, 26722901 - 26722932
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattt 394  Q
    ||||||||||||||||||||||||||||||||    
T  26722901 gttacttccttcctgcgaataatttcacattt 26722932  T

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Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 19400298 - 19400264
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    |||||||||||||||||||||||||||| ||||||    
T  19400298 cagtggcggagccagaaattttatagagcctgggc 19400264  T

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Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 6113620 - 6113587
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctggg 339  Q
    ||||||||||||||||||||||||| ||||||||    
T  6113620 cagtggcggagccagaaattttatacagtctggg 6113587  T

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Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 720
Target Start/End: Original strand, 14088691 - 14088775
Alignment:
Q  635 caccccccggccaccccgggcacccgcccggggctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccac 720  Q
    |||| |||||| |||||||||||  ||||||| |||||||| ||||| |||||||  || | ||||||| ||||||||||| ||||    
T  14088691 caccacccggcgaccccgggcacttgcccggg-ctcaatcgatactttctttatatatggctcaacccattagcccattaacccac 14088775  T

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Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 720
Target Start/End: Original strand, 14398709 - 14398793
Alignment:
Q  635 caccccccggccaccccgggcacccgcccggggctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccac 720  Q
    |||| |||||| |||||||||||  ||||||| |||||||| ||||| |||||||  || | ||||||| ||||||||||| ||||    
T  14398709 caccacccggcgaccccgggcacttgcccggg-ctcaatcgatactttctttatatatggctcaacccattagcccattaacccac 14398793  T

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Target: chr3 (Bit Score: 150; Significance: 8e-79; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 304 - 584
Target Start/End: Complemental strand, 26278565 - 26278289
Alignment:
Q  304 cacagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaa 403  Q
    |||||||||||||| |||||||||||||||| | |||       |||||  |||||   | |||||||||| ||||||||||||||||||| || || ||    
T  26278565 cacagtggcggagcaagaaattttatagagtttaggcaaaaaaattatcgcaaaat---gatacttccttcttgcgaataatttcacatttcctacgaaa 26278469  T
Q  404 tctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctag 503  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| | |||||||| |||| |||||| ||||| ||||||    
T  26278468 tctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctccggaatttacataaaaatccgtaggtaaatccgcatgaaaagctaaaaattctag 26278369  T
Q  504 taatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  26278368 taatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggctagct-ggggtggctccgcccctg 26278289  T

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Target: chr3; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 362 - 584
Target Start/End: Complemental strand, 53988011 - 53987800
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacata 461  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  53988011 tgttacttccttcctgcgaataatttcacatttcctgcggaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacata 53987912  T
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    ||||||            ||||||||||| |||||||||||||||||| || |||  ||||||||||||||| ||||||||||||||||||||||| |||    
T  53987911 aaaatc------------cgcaggaaaagctaaaagttctagtaatggttgagctgactacaaagaaaattgaagctgagcctggactagtgcccaagct 53987824  T
Q  562 agctg-ggggtggctccgcccctg 584  Q
    ||||| ||||||||||||||||||    
T  53987823 agctgaggggtggctccgcccctg 53987800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 365 - 581
Target Start/End: Complemental strand, 35077368 - 35077151
Alignment:
Q  365 tacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaa 464  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  35077368 tacttcattcctgcgaataatttcacattttctgcaaaatctgcaggaaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaa 35077269  T
Q  465 atctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagc 564  Q
    ||   ||||||||| ||||| ||||| |||||||||| | |||||||  |||||||||||||||||||||| |||||| | | |||||||||| ||||||    
T  35077268 attcccaggtaaatccgcagaaaaagctaaaagttctggcaatggctacgcttgctacaaagaaaattggaactgagcttaggctagtgcccaagctagc 35077169  T
Q  565 tggg-ggtggctccgccc 581  Q
    |||| |||||||||||||    
T  35077168 tgggtggtggctccgccc 35077151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 362 - 584
Target Start/End: Complemental strand, 9600497 - 9600287
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacata 461  Q
    ||||||||||||||| |||||||||||| |||| |||||||||| ||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||    
T  9600497 tgttacttccttcctacgaataatttcatatttcctgcggaatcggcaggaaatcctaagcaaaatctgcaggaaatgtgtttcctgcagaatttacata 9600398  T
Q  462 aaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggct 561  Q
    ||||||            |||||||||||  |||||||||||||||||||||| || ||||||||||||| |||||||||| ||| ||||||||||||||    
T  9600397 aaaatc------------cgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaataggagctgagcttgggctagtgcccaggct 9600310  T
Q  562 agctgggggtggctccgcccctg 584  Q
    |||||||||||||||||||||||    
T  9600309 agctgggggtggctccgcccctg 9600287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 420 - 585
Target Start/End: Original strand, 41218403 - 41218569
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| ||| ||||||||||||||| |||||||||||| | ||||||  ||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  41218403 ggcaaaatcggcaggaaatgtgtttcctgcggaatttagacaaaaatgcgcaagtaaatccgcaggaaaagctaaaagttctagtaatggctgggcttgc 41218502  T
Q  520 tacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctga 585  Q
    ||||| |||| | |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  41218503 tacaaggaaagtcggagctgagcctgggctagtgctcaggctagctggggggtggctccgcccctga 41218569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 414 - 584
Target Start/End: Complemental strand, 37516737 - 37516567
Alignment:
Q  414 atcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgg 513  Q
    ||||| ||||| ||||||||||||||||||| |||| ||||||||| |||| || |||||||||| ||||||||||| ||||| |||||||||||| |||    
T  37516737 atccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaattccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggttgg 37516638  T
Q  514 gcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
     ||||||||||||||| ||||| | |||||||| |    ||||||||||||||||||||||||||||||||    
T  37516637 acttgctacaaagaaagttggaaccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 37516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 412 - 546
Target Start/End: Complemental strand, 7501053 - 7500919
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||| ||||||||||||| |||||||||||||| ||| ||| ||| |||||| ||||||||||| ||||| |||||||||||| |    
T  7501053 aaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaacatccgcatgtaaatccgcaggaaaagctaaaaattctagtaatggtt 7500954  T
Q  512 gggcttgctacaaagaaaattggagctgagcctgg 546  Q
    |||||||||||||||||| ||||||| ||||||||    
T  7500953 gggcttgctacaaagaaagttggagccgagcctgg 7500919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 623 - 791
Target Start/End: Complemental strand, 8175796 - 8175631
Alignment:
Q  623 catgggcgttttcaccccccggccaccccgggcacccgcccggggctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccacct 722  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  8175796 catggacgttttcacctcccggccaccccgggcacccgcctggg-ctcaatcggtacttgctttatagttgacccaacccaatatcccattaaaccacct 8175698  T
Q  723 nnnnnnnnnnnnnnnnttgggcaaactcatattattcacacacgtgcaaagcggaaaacagaaacaacg 791  Q
                    |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  8175697 --aaaaaaacaaaaaattggacaaactcatattattcacacacgcgcaaagcagaaaacagaaacaacg 8175631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 412 - 581
Target Start/End: Original strand, 33179148 - 33179306
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||            |||||||||||| ||||||||||||||||||||    
T  33179148 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaat------------tcgcaggaaaagctaaaagttctagtaatggct 33179235  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggggg-tggctccgccc 581  Q
    || ||||||||||| ||| ||||||||||||||   |||||||||||||||| |||||| |||||||||||    
T  33179236 ggacttgctacaaaaaaagttggagctgagcctaagctagtgcccaggctagttgggggatggctccgccc 33179306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 53651995 - 53651835
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||  ||| |||||||||||||| |||||||            ||||||||||| ||||| ||||||||||||      
T  53651995 aaatccttggcaaaatctgcaggaaatgcatttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggta 53651908  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||||||||||||| |||||||||||||||| |    ||||||||||||||||||||||||||||||||    
T  53651907 gggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggctccgcccctg 53651835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 26371045 - 26371218
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||| ||| | ||||| |||||||||||| |    
T  26371045 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaatccgcagaaaatgctaaaatttctagtaatggtt 26371144  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    ||  |||||| ||| ||| ||||||| |||||| | |    ||||||||||| | |||||||||||| ||||||    
T  26371145 ggatttgctaaaaataaagttggagccgagcctaggcactagcccaggctagttggggggtggctccacccctg 26371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 475 - 582
Target Start/End: Complemental strand, 14461111 - 14461007
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||| |    ||||||||| |||||||| |||    
T  14461111 aaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattggagctgagcctgggc---agcccaggctcgctgggggaggc 14461015  T
Q  575 tccgcccc 582  Q
    ||||||||    
T  14461014 tccgcccc 14461007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 44047630 - 44047520
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg--actagtgcccaggctagct-gggggt 571  Q
    |||| ||||||||||| ||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||  ||||  ||||||||||||| ||||||    
T  44047630 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggtacta--gcccaggctagctggggggt 44047533  T
Q  572 ggctccgcccctg 584  Q
    |||||||||||||    
T  44047532 ggctccgcccctg 44047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 420 - 578
Target Start/End: Original strand, 41358646 - 41358805
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaattt-acataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttg 518  Q
    ||||| ||| |||||||||||||||   | ||||||| ||| ||| ||| ||| |||||| || ||||||||  | |||||||| |||||| || | |||    
T  41358646 ggcaaaatccgcaggaaatgtgtttttggaggaattttacacaaatatccgcaagtaaatccgtaggaaaagcgagaagttctaataatggttgagtttg 41358745  T
Q  519 ctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccg 578  Q
    ||||||||||| | | ||||||| ||||||||| ||||||||||||||||||||||||||    
T  41358746 ctacaaagaaagtagaagctgagtctggactagcgcccaggctagctgggggtggctccg 41358805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 475 - 584
Target Start/End: Original strand, 25391899 - 25392009
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  ||||||||||| |||||| |||||||||||||||| |    ||||||||||||| ||||||||    
T  25391899 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggcattagcccaggctagctggggggtgg 25391998  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  25391999 ctccgcccctg 25392009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 12909866 - 12909763
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  |||||||||||||||||| |||||||||||||||       ||||||||||||| ||||||||    
T  12909866 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctg-------gcccaggctagctggggggtgg 12909774  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  12909773 ctccgcccctg 12909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 481 - 584
Target Start/End: Complemental strand, 44625738 - 44625634
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgc 579  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||||||| ||||||| |||||||| |    ||||||||||||| ||||||||||||||    
T  44625738 gcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgc 44625639  T
Q  580 ccctg 584  Q
    |||||    
T  44625638 ccctg 44625634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 481 - 579
Target Start/End: Original strand, 43700235 - 43700333
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcct--ggactagtgcccaggctagctgggggtggctccg 578  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||  | ||||||  |||||||| |||||||||||||||    
T  43700235 gcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgagcactagt--ccaggctaactgggggtggctccg 43700332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 793 - 841
Target Start/End: Complemental strand, 8175646 - 8175598
Alignment:
Q  793 gaaaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctc 841  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8175646 gaaaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctc 8175598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 586
Target Start/End: Original strand, 41199965 - 41200077
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| |||||||||||  | | ||||||||||| ||||||||| ||||||| ||| | | |||||||||||| ||||||| ||||||| || ||||||||    
T  41199965 aaatccgcaggaaaaggcagaggttctagtaattgctgggcttactacaaaaaaagtagaagctgagcctgggctagtgctcaggctaactggggggtgg 41200064  T
Q  574 ctccgcccctgat 586  Q
    |||||||||||||    
T  41200065 ctccgcccctgat 41200077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 28311323 - 28311213
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg--actagtgcccaggctagct-gggggt 571  Q
    |||| ||||||||||  ||||| ||||||||||||  ||||||| |||||||||| ||||||||||||||||  |||| |  ||||||||||| ||||||    
T  28311323 aaatccgcaggaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttggagctgagcctgggcactatt--ccaggctagctggggggt 28311226  T
Q  572 ggctccgcccctg 584  Q
    |||||||||||||    
T  28311225 ggctccgcccctg 28311213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 420 - 539
Target Start/End: Complemental strand, 53068331 - 53068224
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| ||||||||||||||||||| ||| |||||||||| |||||||            ||||||||||||||||| |||||||||||||||| ||||     
T  53068331 ggcaaaatctgcaggaaatgtgtttcctgtggaatttacacaaaaatc------------cgcaggaaaagttaaaacttctagtaatggctggacttgt 53068244  T
Q  520 tacaaagaaaattggagctg 539  Q
    |||||||||| |||||||||    
T  53068243 tacaaagaaagttggagctg 53068224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 501 - 586
Target Start/End: Complemental strand, 38239473 - 38239388
Alignment:
Q  501 tagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctgat 586  Q
    ||||||||||||  ||||||||||||| | |   || ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  38239473 tagtaatggctgaacttgctacaaagatagtaaaagttgagcctggacgagtgcccaggttagctgggggtggctccgcccctgat 38239388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 584
Target Start/End: Original strand, 47511719 - 47511826
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||||||||||  ||| ||||||||||||||||| |||| |||||||||| | | ||||||| ||||||||||| ||| ||||||  |||||| |    
T  47511719 aaatccgcaggaaaagcgaaaggttctagtaatggctggacttgttacaaagaaattagaagctgag-ctggactagtgtccatgctagc-cggggtgtc 47511816  T
Q  575 tccgcccctg 584  Q
    ||||||||||    
T  47511817 tccgcccctg 47511826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 26370931 - 26371015
Alignment:
Q  307 agtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    |||||||||||||| |||||||||||||||||||       |||||  ||||    ||||||||||||||||||||||||||||||||    
T  26370931 agtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacattt 26371015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 28311510 - 28311420
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||| |||||||||||||||||||       |||||  |||| |   ||||||||||||| ||||||||||||||||| ||||    
T  28311510 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaaca---ttacttccttcctacgaataatttcacatttcctgc 28311420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 37516854 - 37516761
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||||| |||||||||||| ||||||       |||||  ||||    |||||||||||||||||||||||||||||||| || ||||    
T  37516854 cagtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacatttcctacgga 37516761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 33179034 - 33179070
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33179034 gttacttcattcctgcgaataatttcacattttctgc 33179070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 41218297 - 41218333
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||| ||||    
T  41218297 gttacttccttcctgcgaataatttcacatttcctgc 41218333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 53988065 - 53988031
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    |||||||||||||||||||||||||||||| ||||    
T  53988065 cagtggcggagccagaaattttatagagtccgggc 53988031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 502 - 584
Target Start/End: Complemental strand, 54846069 - 54845987
Alignment:
Q  502 agtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||| ||  ||||||||||||||| | | || |||| |||| |||||| ||| ||||||||||||||| ||| ||||||    
T  54846069 agtaatggatgaacttgctacaaagaaagtagaagttgagtctgggctagtgtccaagctagctgggggtggttccacccctg 54845987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 1e-65; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 306 - 584
Target Start/End: Complemental strand, 38214953 - 38214689
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcggaatc 405  Q
    ||||||||||||||||||||||||||||  |||||       |||||  |||||   |||||||| ||||||||||||||||||||||| |||||||||     
T  38214953 cagtggcggagccagaaattttatagagcttgggcaaaaaaattatcgcaaaat---gttacttcattcctgcgaataatttcacatttcctgcggaatt 38214857  T
Q  406 tgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagta 505  Q
    ||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||||||            ||||||||||| ||||||||||||||    
T  38214856 tgcaggaaatcctagacaaaatctgcaggaaatgtgttttatgcagaatttacataaaaatc------------cgcaggaaaagctaaaagttctagta 38214769  T
Q  506 atggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgcccctg 584  Q
     ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  38214768 ttggctggacttgctacaaagaaaattggagctgagcccgggctagtgcccaggctagctggggggtggctccgcccctg 38214689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 381 - 584
Target Start/End: Original strand, 27321843 - 27322034
Alignment:
Q  381 ataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattc 480  Q
    |||||||||||| | |||| ||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||||||            |    
T  27321843 ataatttcacatatcctgcagaatctgcaggaaattctaggcaaaatttgcaggaaatgtgtttcctgcggaatttacataaaaatc------------c 27321930  T
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  27321931 gcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcaagtgcccaggctagctgggggtggctccgcc 27322030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 420 - 584
Target Start/End: Original strand, 39431694 - 39431859
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| ||||||| ||||||||||| || ||||||||||| |||| || |||||||||| |||| |||||| ||||||||| |||||| |  ||| ||||    
T  39431694 ggcaaaatctgcacgaaatgtgtttcctacggaatttacacaaaactccgcaggtaaatccgcaagaaaagctaaaagttcaagtaattgaagggtttgc 39431793  T
Q  520 tacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    |||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||| |||||||    
T  39431794 tacaaagaaagttggagctgagcccgggctagtgcccaggctagctggggggtggctctgcccctg 39431859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 626 - 722
Target Start/End: Complemental strand, 30794477 - 30794382
Alignment:
Q  626 gggcgttttcaccccccggccaccccgggcacccgcccggggctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccacct 722  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30794477 gggcgttttcacctcccggccaccccgggcacccgcccggg-ctcaatcggtaattgctttatagttgacccaacccaatagcccattaagccacct 30794382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 413 - 584
Target Start/End: Original strand, 36406514 - 36406686
Alignment:
Q  413 aatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctg 512  Q
    |||||| ||||| ||||||||||||||||||| || ||||||||||| ||| ||| |||||||||| | ||||||||| ||||| || ||||||||  ||    
T  36406514 aatccttggcaaaatctgcaggaaatgtgtttcctacggaatttacacaaatatccgcaggtaaatccacaggaaaagctaaaaattatagtaatgtttg 36406613  T
Q  513 ggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    ||||||||||||||||| ||||||| |||||||| |    ||||||||||||| |||||||||||||||||||    
T  36406614 ggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcccctg 36406686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 412 - 582
Target Start/End: Complemental strand, 13243185 - 13243025
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||| |||||||||||||| |||||||||||||| |||| || |||| |||||  |||||||||| ||||||||||| ||||||||    
T  13243185 aaatccttggcaaaatctacaggaaatgtgtttcctgcggaatttacacaaaactccgcagataaatctgcaggaaaagctaaaagttctaataatggct 13243086  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccc 582  Q
    |||||||||||||| ||| |||||| ||          |||||||||||||||||||||||||||||||||    
T  13243085 gggcttgctacaaaaaaagttggaggtg----------agtgcccaggctagctgggggtggctccgcccc 13243025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 412 - 583
Target Start/End: Original strand, 34282921 - 34283081
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||| |||||||||  ||||||            |||| |||||| ||||||||||||||||| ||    
T  34282921 aaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttacactaaaatc------------cgcaagaaaagctaaaagttctagtaatgact 34283008  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccct 583  Q
    || ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  34283009 ggacttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgcccct 34283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 412 - 586
Target Start/End: Complemental strand, 24965124 - 24964961
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||||||||| ||||| |||||||||||| |    
T  24965124 aaatcctaggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggtt 24965037  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg-ggtggctccgcccctgat 586  Q
    |||||||||||||||||| ||||||| |||||||| |    |||||||||||||||| ||||||||||||| ||||    
T  24965036 gggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggtggtggctccgcccatgat 24964961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 441 - 584
Target Start/End: Complemental strand, 8968404 - 8968260
Alignment:
Q  441 gtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctga 540  Q
    |||| ||||||||||||||  || ||| |||||||||| ||||| |||||| | | ||||||||||||||||| |||||||||||| || | | ||||||    
T  8968404 gtttcctgcggaatttacaccaatatccgcaggtaaatccgcagaaaaagtgataggttctagtaatggctggacttgctacaaaggaagtagaagctga 8968305  T
Q  541 gcctggactagtgcccaggctagctg-ggggtggctccgcccctg 584  Q
    | |||| |||||||| |||||||||| |||||||||||| |||||    
T  8968304 gtctgggctagtgcctaggctagctggggggtggctccgtccctg 8968260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 451 - 580
Target Start/End: Original strand, 3384082 - 3384211
Alignment:
Q  451 gaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggacta 550  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| ||||| ||||| ||||||  || ||||||||||||||| |||||||||||||||| |      
T  3384082 gaatttacacaaaaatccgcaggtaaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctgggcac 3384181  T
Q  551 gtgcccaggctagctgggggtggctccgcc 580  Q
       |||||||||||||| ||||||||||||    
T  3384182 taacccaggctagctggaggtggctccgcc 3384211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 412 - 585
Target Start/End: Complemental strand, 28928151 - 28927989
Alignment:
Q  412 aaatcctaggcaatatctgcagg-aaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggc 510  Q
    ||||||| ||||| ||||||||| |||||||||| |||||||||||||| |||| ||            ||||||||||| ||||| ||||||||||||     
T  28928151 aaatccttggcaaaatctgcagggaaatgtgtttcctgcggaatttacacaaaactc------------cgcaggaaaagctaaaaattctagtaatggt 28928064  T
Q  511 tgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctga 585  Q
    | ||||||||||||||||| ||||||| |||||||| |    ||||||  |||||||||||||||||||||||||    
T  28928063 taggcttgctacaaagaaagttggagccgagcctgggcactagcccagaatagctgggggtggctccgcccctga 28927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 475 - 586
Target Start/End: Original strand, 21138133 - 21138245
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| |||||||||||  | | ||||||||||||| | ||||||||||||||||| | | |||||||||||||||| |||| | ||||||| ||||||||    
T  21138133 aaatccgcaggaaaagcaagaggttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagctggggggtgg 21138232  T
Q  574 ctccgcccctgat 586  Q
    |||||||||||||    
T  21138233 ctccgcccctgat 21138245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 412 - 545
Target Start/End: Original strand, 31500855 - 31500985
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||| | ||||||||||||| |||| ||||||||||  ||||| ||| |||||| | ||| ||||| ||||| || ||||||||||     
T  31500855 aaatccttggcaaaatccgtaggaaatgtgtttcctgcagaatttacat--aaatccgcaagtaaatcctcagaaaaagctaaaaattttagtaatggcg 31500952  T
Q  512 gggcttgctacaaagaaaattggagctgagcctg 545  Q
    | || ||||||||||||| |||||||||||||||    
T  31500953 gagc-tgctacaaagaaagttggagctgagcctg 31500985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 27321753 - 27321840
Alignment:
Q  309 tggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||| |||||||||||||||||||| ||||||       |||||  |||||   |||||||||||||||||||||||||||||||||||||    
T  27321753 tggcagagccagaaattttatagagcctgggcaaaaaaattatcgcaaaat---gttacttccttcctgcgaataatttcacattttctgc 27321840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 28928288 - 28928197
Alignment:
Q  305 acagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||| ||||||| ||||||||||        ||||| |||||    |||||||||||||||||||||||||||||||||||||    
T  28928288 acagtggcggagccaggaattttaaagagtctgggtaaaaaatttatcgtaaaaa---gttacttccttcctgcgaataatttcacattttctgc 28928197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 795 - 841
Target Start/End: Complemental strand, 30794336 - 30794290
Alignment:
Q  795 aaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctc 841  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  30794336 aaacagaaacaacactctctgcctctctcatttcagtttcagcgctc 30794290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 569
Target Start/End: Complemental strand, 12478181 - 12478081
Alignment:
Q  469 gcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg 568  Q
    |||||||||  |||||||||||  | | ||||||| ||| | ||| ||||||||||||||| | | || ||| ||||| |||||||||||||||||||||    
T  12478181 gcaggtaaacccgcaggaaaagagagaggttctagcaatagatggacttgctacaaagaaagtagaagttgatcctgggctagtgcccaggctagctggg 12478082  T
Q  569 g 569  Q
    |    
T  12478081 g 12478081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 13820495 - 13820543
Alignment:
Q  7 attaatcaccaagccaa-gtcacaccttataattaagagtttaaggatg 54  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  13820495 attaatcaccaagccaaagccacaccttataattaagagtttaaggatg 13820543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 34282802 - 34282838
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34282802 gttacttccttcctgcgaataatttcacatttcctgc 34282838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 36406378 - 36406462
Alignment:
Q  307 agtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    |||||||||||||| |||||||||||| ||||||       |||||  ||||    ||||||||||||||||||||||||||||||||    
T  36406378 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacattt 36406462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 720
Target Start/End: Original strand, 14051246 - 14051301
Alignment:
Q  665 gggctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccac 720  Q
    |||||||||| ||| || ||||||| ||| ||||||| ||||||||||||||||||    
T  14051246 gggctcaatcagtattttctttatatttggcccaacctaatagcccattaagccac 14051301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 43843193 - 43843107
Alignment:
Q  498 ttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgg-gggtggctccgcccctg 584  Q
    |||||||||||||||  ||||||||||||||| | | || |||||| || |||||| ||||||||| ||| |||||||||| ||||||    
T  43843193 ttctagtaatggctgaccttgctacaaagaaagtagaagttgagcccgggctagtg-ccaggctagatggagggtggctccacccctg 43843107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 376442 - 376380
Alignment:
Q  508 ggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggggg 570  Q
    |||||| |||| || ||||||| | | ||||||||| || |||||||||||||||||||||||    
T  376442 ggctggacttggtataaagaaagtagcagctgagcccgggctagtgcccaggctagctggggg 376380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 8e-48; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 451 - 591
Target Start/End: Original strand, 28614434 - 28614575
Alignment:
Q  451 gaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggacta 550  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||    
T  28614434 gaatttacataaaaatccgcaggtaaatccgtaggaaaagttaaaagttctagtaatggctaggcttgctacaaagataattggagctgagcctgggcta 28614533  T
Q  551 gtgcccaggctagct-gggggtggctccgcccctgatgtgtc 591  Q
    ||||||| ||||||| |||||||||||| |||||| ||||||    
T  28614534 gtgcccacgctagctggggggtggctccacccctgctgtgtc 28614575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 9046939 - 9047111
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||| |||| |||||||| ||||||||| ||||||||||| ||||| |||||||||||| |    
T  9046939 aaatccttgacaaaatctgcaggaaatgtgtttcctgcggaatctacacaaaaatctacaggtaaatccgcaggaaaagctaaaaattctagtaatggtt 9047038  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    || ||| ||||||||||| ||| ||||||| ||||||    ||||||||||||||||||||||||||||||||    
T  9047039 ggacttactacaaagaaagttgaagctgagtctggacactagcccaggctagctgggggtggctccgcccctg 9047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 9696147 - 9695975
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||  ||||| ||||| |||||  |    
T  9696147 aaatccttggcaaaatctgcaggaaatatgtttcctgcggaatttacacaaaaatctgcaggtaaatccgcaggaaaatctaaaaattctaataatgatt 9696048  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||||||||||||| ||||||| |||||||| |    |||||||||||||||||||| |||||||||||    
T  9696047 gggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtgactccgcccctg 9695975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 372 - 581
Target Start/End: Original strand, 14938894 - 14939092
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||  |||||||||||||| || | ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||    
T  14938894 ttcctgcagataatttcacatttcctacagaatctgcaggaaatcctaagcaaaatctgcaggaaatgtgtttcctgcggaatttacataaaaatcagca 14938993  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-ggggg 570  Q
      ||          ||||  |||||||||||||||||||| || ||||||||||||||||||||||||||||||  |||||| ||||||||||| |||||    
T  14938994 --ta----------aaaaactaaaagttctagtaatggctaggtttgctacaaagaaaattggagctgagcctgagctagtgtccaggctagctgggggg 14939081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 372 - 584
Target Start/End: Complemental strand, 2960816 - 2960615
Alignment:
Q  372 ttcctgcgaataatttcacattttctgcggaatctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgca 471  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||  ||||||||||||||| ||||| ||||||||||| ||||        
T  2960816 ttcctgcggataatttcacattttctagggaatctgcaggaaatcctgggcaaaattagcaggaaatgtgttttctgcgaaatttacataataatc---- 2960721  T
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-ggggg 570  Q
            ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | || | |||||    
T  2960720 --------cgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggctagtacccagacaagttgggggg 2960629  T
Q  571 tggctccgcccctg 584  Q
    | ||||||||||||    
T  2960628 tcgctccgcccctg 2960615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 471 - 584
Target Start/End: Complemental strand, 34188835 - 34188721
Alignment:
Q  471 aggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggg-g 569  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |    
T  34188835 aggtaaatccgcaggaaaagttgaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagctgggag 34188736  T
Q  570 gtggctccgcccctg 584  Q
    ||| |||||||||||    
T  34188735 gtgactccgcccctg 34188721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 2836224 - 2836396
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| | ||| ||||||||||||||| ||| ||||||||||||||  |||||| |||| | ||| ||||| ||||| |||||||||||| ||||| |    
T  2836224 aaatccttgacaaaatctgcaggaaatgtatttcctgcggaatttacacgaaaatccgcagatcaatccgcagaaaaagctaaaagttctaggaatggtt 2836323  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||| |||||||||||||| |||||||| | |||| ||||||||||  | ||||||||||||||||||||||||    
T  2836324 gggtttgctacaaagaaagttggagctaaacctgaactagtgcccgagttagctgggggtggctccgcccctg 2836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 626 - 791
Target Start/End: Complemental strand, 22258436 - 22258274
Alignment:
Q  626 gggcgttttcaccccccggccaccccgggcacccgcccggggctcaatcggtacttgctttatagttgacccaacccaatagcccattaagccacctnnn 725  Q
    |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||       
T  22258436 gggcgttttcacccccag-ccaccccgggcacccgcccggg-ctcaatcggtacttgctttatagttgatccaacccaatagcccattaagccacct-aa 22258340  T
Q  726 nnnnnnnnnnnnnttgggcaaactcatattattcacacacgtgcaaagcggaaaacagaaacaacg 791  Q
                 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  22258339 aaaaaacaaaaaattgggcaaactcatattattcacacacgcgcaaagcagaaaacagaaacaacg 22258274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 5582516 - 5582407
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||||||||||  | | ||||||||||| |||| |||||||||||||||| | | || ||||||||| |||||||||||||||||||||||||||    
T  5582516 aaatccgcaggaaaagcgagaggttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgggggtggc 5582417  T
Q  575 tccgcccctg 584  Q
    ||||||||||    
T  5582416 tccgcccctg 5582407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 412 - 536
Target Start/End: Complemental strand, 15529038 - 15528914
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||||||||||||   ||| |||||||||||||| ||| ||| |||||||||| ||||||||||| ||||| ||||| ||||||      
T  15529038 aaatccttggcaaaatctgcaggaaatacatttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaaattctaataatggta 15528939  T
Q  512 gggcttgctacaaagaaaattggag 536  Q
    |||||||||||||||||| ||||||    
T  15528938 gggcttgctacaaagaaagttggag 15528914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 10397816 - 10397977
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| || |||||||||||||||| |||||||||||||| || ||||            ||||||||||| ||||| |||| ||||||| |    
T  10397816 aaatccttggcaaaatatgcaggaaatgtgtttcctgcggaatttacacaacaatc------------cgcaggaaaagctaaaaattctcgtaatggtt 10397903  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    ||| |||||||||||||| |||||||||||||||| |    ||||||||||||| |||||||||||||||||||    
T  10397904 gggtttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccgcccctg 10397977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 23663783 - 23663944
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||||||||| ||||| || ||| ||||| |    
T  23663783 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaaattatagcaatggtt 23663870  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    |||||||||||||||||| ||||||| |||||||| |    ||||||||||||| |||||||||||| ||||||    
T  23663871 gggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctcctcccctg 23663944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 482 - 586
Target Start/End: Complemental strand, 339369 - 339266
Alignment:
Q  482 caggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgccc 581  Q
    ||||||||| |||||||| |||||||||||| | |||||||||||||| || |||||||  |||| ||| |||||||||||||| |||||||||||||||    
T  339369 caggaaaagctaaaagttttagtaatggctgagtttgctacaaagaaagttagagctgaatctgggctaatgcccaggctagct-ggggtggctccgccc 339271  T
Q  582 ctgat 586  Q
     ||||    
T  339270 ttgat 339266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 412 - 536
Target Start/End: Complemental strand, 15122135 - 15122011
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||| ||||||| | | ||||| |||||||||| ||||| ||||| ||||| ||||| |||||       
T  15122135 aaatccttggcaaaatctgcaggaaatgtgtttcctgcagaatttagacacaaatccgcaggtaaatccgcagaaaaagctaaaaattctaataatgata 15122036  T
Q  512 gggcttgctacaaagaaaattggag 536  Q
    ||| || ||||||||||||||||||    
T  15122035 gggttttctacaaagaaaattggag 15122011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 420 - 581
Target Start/End: Original strand, 34249045 - 34249195
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgc 519  Q
    ||||| ||||||||||||||||||| |||| ||||||||| |||||||            ||||||||||| ||||| |||||||||||| |||||||||    
T  34249045 ggcaaaatctgcaggaaatgtgtttcctgcagaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggttgggcttgc 34249132  T
Q  520 tacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgccc 581  Q
    |||||||||| |||||| |||| |||| |    ||||| ||||||| ||||||||||||||||    
T  34249133 tacaaagaaagttggagttgagtctgggcactagcccaagctagctggggggtggctccgccc 34249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 412 - 496
Target Start/End: Complemental strand, 2941314 - 2941230
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaa 496  Q
    ||||||| ||||| ||||||||||||||||||| ||||| ||||||||  |||||| |||||||||| ||||||||||| |||||    
T  2941314 aaatccttggcaaaatctgcaggaaatgtgtttcctgcgaaatttacactaaaatccgcaggtaaatccgcaggaaaagataaaa 2941230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 793 - 841
Target Start/End: Complemental strand, 22258289 - 22258241
Alignment:
Q  793 gaaaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctc 841  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22258289 gaaaacagaaacaacgctctctgcctctctcgtttcagtttcagcgctc 22258241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 1781046 - 1781207
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||||||||| |||||||            | ||||||||| ||||| || ||||||||| |    
T  1781046 aaatccttggcaaaatctgcaggaaatgtgtttcctgaggaatttacacaaaaatc------------cacaggaaaagctaaaatttatagtaatggtt 1781133  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    ||| |||||||||||||| ||||||| || ||||| |    |||||| |||||| |||||||||||||||||||    
T  1781134 gggtttgctacaaagaaagttggagccgaacctgggcactagcccagactagctggggggtggctccgcccctg 1781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 28614345 - 28614382
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28614345 tgttacttccttcctgcgaataatttcacattttctgc 28614382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 9696276 - 9696193
Alignment:
Q  313 ggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||||||||||||||||       |||||  ||||    |||||||||||||||||||||||||||||||| ||||    
T  9696276 ggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacatttcctgc 9696193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 31200099 - 31200132
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttc 396  Q
    ||||||||||||||||||||||||||||||||||    
T  31200099 gttacttccttcctgcgaataatttcacattttc 31200132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 2836109 - 2836145
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2836109 gttacttccttcctgcgaataatttcacatttcctgc 2836145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 10397698 - 10397782
Alignment:
Q  307 agtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    ||||||||| |||| |||||||||||||||||||       |||||  ||||    ||||||||||||||||||||||||||||||||    
T  10397698 agtggcggaaccaggaattttatagagtctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacattt 10397782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 394
Target Start/End: Original strand, 1780985 - 1781016
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattt 394  Q
    ||||||||||||||||||||||||||||||||    
T  1780985 gttacttccttcctgcgaataatttcacattt 1781016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 31188254 - 31188293
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  31188254 gttacttccttcctgtgaataatttcacattttctacgga 31188293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 8e-48; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 14727421 - 14727248
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||| || |||||||||| ||||||||||| ||||| |||||||||||| |    
T  14727421 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaactccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggtt 14727322  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagc-tgggggtggctccgcccctg 584  Q
    || ||||||||||||||| |||||||||||||||| |    |||||||||||| ||||||||||||||||||||    
T  14727321 ggacttgctacaaagaaagttggagctgagcctgggcactagcccaggctagcttgggggtggctccgcccctg 14727248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 306 - 584
Target Start/End: Original strand, 31844529 - 31844817
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga--- 402  Q
    ||||||||||||||| |||||||||||||||||||       |||||  |||||   |||||||||||||||||||||||||||||||| || ||||       
T  31844529 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaat---gttacttccttcctgcgaataatttcacatttcctacggatat 31844625  T
Q  403 atct-----gcagga----aatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagtta 493  Q
    ||||     || | |    |||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||| ||    
T  31844626 atctttcctgcggaacctaaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatctgcaggtaaatccgtaggaaaagcta 31844725  T
Q  494 aaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    ||| |||||||||||| |||| |||||| ||||||| |||||| ||||||||| |    |  |||||||||| |||||||||||||||||||    
T  31844726 aaatttctagtaatggttgggtttgctagaaagaaagttggagttgagcctgggcactagatcaggctagctggggggtggctccgcccctg 31844817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 306 - 585
Target Start/End: Complemental strand, 4774199 - 4773936
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgcgga-at 404  Q
    |||||||||||||||||||||||||||||||||||       |||||  |||||   ||||||| ||||||||||||||||||||||||  |||||| |     
T  4774199 cagtggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaat---gttactttcttcctgcgaataatttcacatttcttgcggataa 4774103  T
Q  405 ctgcaggaaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagt 504  Q
     | ||  |  ||||  | |||  ||||||||||||||||| |||||||||||||||||| |||            ||||||||||| |||||||||||||    
T  4774102 tttcac-atttcctgcggaat--ctgcaggaaatgtgtttcctgcggaatttacataaatatc------------cgcaggaaaagctaaaagttctagt 4774018  T
Q  505 aatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgcccctga 585  Q
    ||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||||    
T  4774017 aatggctgggcttgctacaaaaaaaattggagttgagtctgggctagtgcccaggctagctggggggtggctccgcccctga 4773936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 8239384 - 8239210
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgt--ttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatgg 509  Q
    ||||||| ||||| ||||||||||||| | |  || |||||||||||||| ||||||| ||||||||||  |||||||||| ||||| ||||||||||||    
T  8239384 aaatccttggcaaaatctgcaggaaatatatatttcctgcggaatttacacaaaaatccgcaggtaaatctgcaggaaaagctaaaaattctagtaatgg 8239285  T
Q  510 ctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
      ||| || ||||||||||| |||||||||||||||| |    ||||||||||||||||||||||||||||||||    
T  8239284 tagggattactacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggctccgcccctg 8239210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 412 - 585
Target Start/End: Complemental strand, 6331777 - 6331605
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||| ||||||||||||| |||||||||||||| ||||||| | |||||||  ||||||||||| ||||| |||||||||||| |    
T  6331777 aaatccttggcaaaatctgtaggaaatgtgtttcctgcggaatttacacaaaaatccggaggtaaacccgcaggaaaagctaaaatttctagtaatggtt 6331678  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctga 585  Q
    | | |||||||| ||||| ||||||| |||||||| |    ||||||||||||| |||||||||||||||||||    
T  6331677 gagtttgctacatagaaagttggagccgagcctgggcactagcccaggctagct-ggggtggctccgcccctga 6331605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 475 - 583
Target Start/End: Original strand, 44238934 - 44239042
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||| |||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  44238934 aaatccgcaagaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgcccagactagctgggggtggc 44239033  T
Q  575 tccgcccct 583  Q
    |||||||||    
T  44239034 tccgcccct 44239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 412 - 543
Target Start/End: Original strand, 48940440 - 48940571
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| | ||| ||||||| ||||||||||| |||||||||||||| ||||||| |||  ||||| ||||||||||| ||||||||||||||||||||    
T  48940440 aaatccttgacaaaatctgcatgaaatgtgtttcctgcggaatttacacaaaaatccgcaaataaatccgcaggaaaagctaaaagttctagtaatggct 48940539  T
Q  512 gggcttgctacaaagaaaattggagctgagcc 543  Q
     ||||||||||||||||  |||||||||||||    
T  48940540 tggcttgctacaaagaatgttggagctgagcc 48940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 481 - 584
Target Start/End: Complemental strand, 49898449 - 49898345
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgc 579  Q
    |||||||||| ||||| |||||||||||||||  |||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  49898449 gcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgc 49898350  T
Q  580 ccctg 584  Q
    |||||    
T  49898349 ccctg 49898345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 475 - 584
Target Start/End: Original strand, 6802175 - 6802284
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||||||||||  | |||||||||||||||||| |||||||||||||||| | | || ||||||||| |||||||||||||||||||||||||||    
T  6802175 aaatccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgggggtggc 6802274  T
Q  575 tccgcccctg 584  Q
    || |||||||    
T  6802275 tctgcccctg 6802284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 27584037 - 27584198
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||||||||| ||||| |||||||||||| |    
T  27584037 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggtt 27584124  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
     ||||||||||||||||| ||||||| |||||||| |    ||||||||||||| |||||||||||||||||||    
T  27584125 tggcttgctacaaagaaagttggagccgagcctgggcgctagcccaggctagctggggggtggctccgcccctg 27584198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 27460787 - 27460626
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||            |||| |||||| ||||| |||||||||||| |    
T  27460787 aaatccttggcaaaatctgcaggaaatgtgtttccttcggaatttacacaaaaatc------------cgcaagaaaagctaaaaattctagtaatggtt 27460700  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctg 584  Q
    |||||||||||||||||| |||||||||||||||| |    ||||| ||||||| |||||||||||||||||||    
T  27460699 gggcttgctacaaagaaagttggagctgagcctgggcactagcccatgctagctagggggtggctccgcccctg 27460626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 25007504 - 25007393
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  |||||||||||||||||| |||||||||||||||| |    ||||||||||||| ||||||||    
T  25007504 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcattagcccaggctagctggggggtgg 25007405  T
Q  574 ctccgcccctga 585  Q
    ||||||||||||    
T  25007404 ctccgcccctga 25007393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 412 - 584
Target Start/End: Complemental strand, 24745503 - 24745334
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||||||| |||||||||| |||| ||||||||| ||||| |  ||||||||| || ||  |||| ||||| |||||||||| |||    
T  24745503 aaatccttggcaaaatctgcagaaaatgtgtttcctgcagaatttacacaaaaaaccacaggtaaatccgtag--aaagctaaaaattctagtaatagct 24745406  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
      ||| | |||||||||| ||||||||||| |||| ||||| ||||| |||  ||||||||||||||||||||    
T  24745405 cagct-gttacaaagaaagttggagctgagactgggctagtacccagactaattgggggtggctccgcccctg 24745334  T

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Target: chr1; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 412 - 546
Target Start/End: Original strand, 25011560 - 25011682
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||||||| |||||||||| |||||||||||||| |||||||            ||||||||||| ||||| |||||||||||| |    
T  25011560 aaatccttggcaaaatctgcagaaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggtt 25011647  T
Q  512 gggcttgctacaaagaaaattggagctgagcctgg 546  Q
    |||||||||||||||||| ||||||||||||||||    
T  25011648 gggcttgctacaaagaaagttggagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 555
Target Start/End: Original strand, 4642145 - 4642225
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcc 555  Q
    |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||||||||    
T  4642145 aaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagcctggactagtgcc 4642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 475 - 546
Target Start/End: Complemental strand, 9527085 - 9527014
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg 546  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  9527085 aaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgggcctgg 9527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 412 - 585
Target Start/End: Complemental strand, 24646144 - 24645983
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| || |||||| |||| |||||||            | ||||||||| |||||||||||||||||| |    
T  24646144 aaatccttggcaaaatctgcaggaaatgtgtttcctacggaatgtacacaaaaatc------------cacaggaaaagctaaaagttctagtaatggtt 24646057  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgcccctga 585  Q
    | | |||||||||||||| |||||| ||||||||  |||||| ||| |||||||| |||||||||||||||||||    
T  24646056 gag-ttgctacaaagaaagttggagttgagcctgagctagtgtccatgctagctggggggtggctccgcccctga 24645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 585
Target Start/End: Original strand, 37154065 - 37154176
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| ||||||||||||  | |||| ||||||||||| |||||||||||||||| |    ||||||||||||| ||||||||    
T  37154065 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 37154164  T
Q  574 ctccgcccctga 585  Q
    ||||||||||||    
T  37154165 ctccgcccctga 37154176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 44305452 - 44305342
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtgg 573  Q
    |||| ||||||||||| ||||| |||||||||| |  |||||| ||||||||||| |||||||||||||||| |    ||||||||||||| ||||||||    
T  44305452 aaatccgcaggaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtgg 44305353  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  44305352 ctccgcccctg 44305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 584
Target Start/End: Complemental strand, 4163460 - 4163372
Alignment:
Q  497 gttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgcccctg 584  Q
    |||| |||||| ||||||||||||| ||||||| |||||||| | ||||| ||||||||||||||||||| |||||||||||| |||||    
T  4163460 gttccagtaatagctgggcttgctataaagaaagttggagctaaacctgggctagtgcccaggctagctggggggtggctccgtccctg 4163372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 11647180 - 11647071
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||||||||||  | | ||||| ||||||||| ||||||||||||||||| | | || |||| || |  |||||| |||||||||||||||||||    
T  11647180 aaatccgcaggaaaagcgagaggttcttgtaatggcttggcttgctacaaagaaagtagaagttgagtctcggatagtgctcaggctagctgggggtggc 11647081  T
Q  575 tccgcccctg 584  Q
    ||||||||||    
T  11647080 tccgcccctg 11647071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 472 - 581
Target Start/End: Original strand, 33469013 - 33469121
Alignment:
Q  472 ggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggt 571  Q
    ||||||| ||||||||||| ||||| |||||||||||| ||   |||||| ||||||| |||||||||||||| | |    ||||||||||||| |||||    
T  33469013 ggtaaatccgcaggaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgagcctaggcactagcccaggctagct-ggggt 33469111  T
Q  572 ggctccgccc 581  Q
    ||||||||||    
T  33469112 ggctccgccc 33469121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 497 - 584
Target Start/End: Complemental strand, 37574951 - 37574864
Alignment:
Q  497 gttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||||||||||   ||||||| ||||||| | | || |||| ||||||||||| |||| |||| ||||||||||||||||||||    
T  37574951 gttctagtaatggctatacttgctataaagaaagtagaagttgagtctggactagtgtccagactaggtgggggtggctccgcccctg 37574864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 14727557 - 14727467
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||| ||||||       |||||  ||||    |||||||||||||||||||||||||||||||| ||||    
T  14727557 cagtggcggagccagaaattttatagagcctgggcaaaaaaattatcgcaaaac---gttacttccttcctgcgaataatttcacatttcctgc 14727467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 26686524 - 26686610
Alignment:
Q  498 ttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||||||||||| | ||| |||||||||| ||| | | ||||||| |||||||||||||||   |||||||||||||||||| |||||    
T  26686524 ttctagtaatgaccgggtttgctacaaaaaaagtagaagctgagtctggactagtgcccatattagctgggggtggctccgtccctg 26686610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 475 - 580
Target Start/End: Original strand, 33169357 - 33169462
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| |||||||||||  | | ||| ||||||||| |||||||| |||||| ||| | | |||||||| |||  ||||||| ||||||||| ||||||||    
T  33169357 aaatccgcaggaaaagcgagaggttatagtaatggttgggcttgttacaaaaaaagtagaagctgagcttgggttagtgcctaggctagctaggggtggc 33169456  T
Q  575 tccgcc 580  Q
    ||||||    
T  33169457 tccgcc 33169462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 481 - 540
Target Start/End: Original strand, 1428461 - 1428520
Alignment:
Q  481 gcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctga 540  Q
    |||||||||  ||||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  1428461 gcaggaaaaactaaaaattctagtaatggtagggcttgctacaaagaaagttggagctga 1428520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 4641979 - 4642018
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4641979 gttacttccttcctgcgaataatttcacatttcctgcgga 4642018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 1428361 - 1428397
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1428361 gttacttccttcctacgaataatttcacattttctgc 1428397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 33468860 - 33468944
Alignment:
Q  307 agtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattt 394  Q
    |||||||||||||| |||||||||||| ||||||       |||||  ||||    ||||||||||||||||||||||||||||||||    
T  33468860 agtggcggagccaggaattttatagagcctgggcaaaaaatttatcgcaaaac---gttacttccttcctgcgaataatttcacattt 33468944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 27460851 - 27460816
Alignment:
Q  364 ttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27460851 ttacttccttcctgcgaataatttcacatttcctgc 27460816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 4163586 - 4163556
Alignment:
Q  305 acagtggcggagccagaaattttatagagtc 335  Q
    |||||||||||||||||||||||||||||||    
T  4163586 acagtggcggagccagaaattttatagagtc 4163556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 577
Target Start/End: Complemental strand, 41751971 - 41751909
Alignment:
Q  515 cttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctcc 577  Q
    ||||||||||||||| | | || || | |||| |||||||||||||||||||||| |||||||    
T  41751971 cttgctacaaagaaagtagaagttgcgtctgggctagtgcccaggctagctggggttggctcc 41751909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 42817823 - 42817789
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    ||||||||||||||| |||||||||||||||||||    
T  42817823 cagtggcggagccaggaattttatagagtctgggc 42817789  T

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Target: scaffold0021 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 421 - 584
Target Start/End: Original strand, 109332 - 109494
Alignment:
Q  421 gcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgct 520  Q
    |||| |||||||| | |||||||| |||||||||||||| ||||||  |||||||||| | ||||||||||||||||||||||||||  ||||| |||||    
T  109332 gcaaaatctgcagaacatgtgttttctgcggaatttacacaaaaattcgcaggtaaatccacaggaaaagttaaaagttctagtaataactggggttgct 109431  T
Q  521 acaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||    
T  109432 acaaagaaagttggagctgagcctggactagtgcccaagctagct-ggggtggctccacccctg 109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 507
Target Start/End: Original strand, 112255 - 112333
Alignment:
Q  426 atctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaat 507  Q
    |||||||| ||||||||   ||| |||||||||| ||||||  |||||||||| || |||||||||||||||||||||||||    
T  112255 atctgcagaaaatgtgt---ctgtggaatttacacaaaaattcgcaggtaaatccgtaggaaaagttaaaagttctagtaat 112333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 412 - 546
Target Start/End: Complemental strand, 25563027 - 25562893
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||||||| || |||| |||| ||||| ||||||||||| |||||||||||||||||| |    
T  25563027 aaatccttggcaaaatctgcaggaaatgtatttcctgcggaatttacaaaacaatccgcagataaatccgcaggaaaagctaaaagttctagtaatggtt 25562928  T
Q  512 gggcttgctacaaagaaaattggagctgagcctgg 546  Q
    |||||||||||||||||| ||||||||||||||||    
T  25562927 gggcttgctacaaagaaagttggagctgagcctgg 25562893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 412 - 586
Target Start/End: Complemental strand, 34756783 - 34756608
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||  ||||||| ||| || || |||||||||||  ||||||||||||||||| |||||||||||| | | |||||||||| |||     
T  34756783 aaatccttggcaaaatccacaggaaacgtgattcctacggaatttacaccaaaatctgcaggtaaatccgcaggaaaagtgagaggttctagtaacggcc 34756684  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtggctccgcccctgat 586  Q
    || ||||||||||||||| | | |||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  34756683 ggacttgctacaaagaaagtagaagctgagcctgggctagtgcccaggctagctggggggtggctccgtccctgat 34756608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 480 - 584
Target Start/End: Original strand, 304202 - 304307
Alignment:
Q  480 cgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccg 578  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||| ||||||| ||||||||| |||    
T  304202 cgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggctagtgcccaagctagctggggggtggcaccg 304301  T
Q  579 cccctg 584  Q
    ||||||    
T  304302 cccctg 304307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 412 - 586
Target Start/End: Complemental strand, 13203859 - 13203696
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| |||||||||||| |||||| |||||||||||||| |||||||            ||||||||||| ||||| |||||||||||| |    
T  13203859 aaatccttggcaaaatctgcaggaaacgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagctaaaaattctagtaatggtt 13203772  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagct-gggggtggctccgcccctgat 586  Q
    |||||||||||||||||| |||||||||||||||| |    ||||||||||||| |||||||||||| ||||||||    
T  13203771 gggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggctccacccctgat 13203696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 475 - 584
Target Start/End: Original strand, 33909416 - 33909525
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||||||||||||||  ||||| ||||||||||| ||| |||||||||||||||| |||||||| || |||| |||||||||||| |||||| |||||||    
T  33909416 aaattcgcaggaaaaactaaaaattctagtaatgactgagcttgctacaaagaaagttggagctaagtctgggctagtgcccaggttagctgagggtggc 33909515  T
Q  575 tccgcccctg 584  Q
    ||||||||||    
T  33909516 tccgcccctg 33909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 412 - 580
Target Start/End: Original strand, 22572724 - 22572880
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||||||||| ||||||            |||||||||||| ||||  |||||||||||| |    
T  22572724 aaatccttggcaaaatctgcaggaaatgtgtttcctggggaatttacacaaaaat------------tcgcaggaaaagctaaatattctagtaatggtt 22572811  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcc 580  Q
     ||||||||||||||||| ||||||||||||||||||    |||||||||||| |||||||||||||||    
T  22572812 aggcttgctacaaagaaagttggagctgagcctggacactagcccaggctagccgggggtggctccgcc 22572880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 475 - 584
Target Start/End: Complemental strand, 2475863 - 2475753
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctg-ggggtgg 573  Q
    |||| |||| || ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||  ||||||| |||||||    
T  2475863 aaatccgcaagacaagctaaaagttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgcccaaactagctggggggtgg 2475764  T
Q  574 ctccgcccctg 584  Q
    ||||| |||||    
T  2475763 ctccgtccctg 2475753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 4570577 - 4570663
Alignment:
Q  498 ttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||||||||||||||| ||||||||||| | | |||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  4570577 ttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggctagtgcccatgctagctgggggtggctccgcccctg 4570663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 412 - 546
Target Start/End: Original strand, 6799909 - 6800031
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            ||||||||||||||||| |||||||||||| |    
T  6799909 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaggaaaagttaaaaattctagtaatggtt 6799996  T
Q  512 gggcttgctacaaagaaaattggagctgagcctgg 546  Q
    | |||||||||||||||| ||||||| ||||||||    
T  6799997 gagcttgctacaaagaaagttggagccgagcctgg 6800031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 584
Target Start/End: Original strand, 41114893 - 41115054
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||  ||||||            ||||||||||  ||||| |||||||||||| |    
T  41114893 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacgaaaatc------------cgcaggaaaaactaaaaattctagtaatggtt 41114980  T
Q  512 gggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctggggg-tggctccgcccctg 584  Q
    | |||||||||||||||| ||||||| |||||||| |    |||||||||||||||||| ||||||||||||||    
T  41114981 gagcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggatggctccgcccctg 41115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 412 - 543
Target Start/End: Original strand, 18299166 - 18299285
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggct 511  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||            |||| |||||||||||| |||||||||||| |    
T  18299166 aaatccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatc------------cgcaagaaaagttaaaaattctagtaatggtt 18299253  T
Q  512 gggcttgctacaaagaaaattggagctgagcc 543  Q
    |||||||||||||||||| |||||| ||||||    
T  18299254 gggcttgctacaaagaaagttggaggtgagcc 18299285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 421 - 549
Target Start/End: Complemental strand, 17148864 - 17148748
Alignment:
Q  421 gcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgggcttgct 520  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||              |||||||| |||||||||||| |||||||    
T  17148864 gcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaaaatccgcaggtaaacc------------taaaagttatagtaatggctgagcttgct 17148777  T
Q  521 acaaagaaaattggagctgagcctggact 549  Q
    ||||||||| |||||||||||||||||||    
T  17148776 acaaagaaagttggagctgagcctggact 17148748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 582
Target Start/End: Complemental strand, 41010516 - 41010409
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggggtggc 574  Q
    |||| ||||| ||||  |||||||||||||||| ||||  |||  |||||| ||| ||||||||||| || |||||||||||||||||||||||| ||||    
T  41010516 aaatccgcagaaaaaactaaaagttctagtaatagctgaacttagtacaaaaaaagttggagctgagtctagactagtgcccaggctagctggggttggc 41010417  T
Q  575 tccgcccc 582  Q
    ||||||||    
T  41010416 tccgcccc 41010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 475 - 569
Target Start/End: Original strand, 42152602 - 42152696
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggg 569  Q
    |||| |||||||||||  | | |||||| ||||||||||  |||||||||||||| | | |||||| ||||||||||||||||| ||||||||||    
T  42152602 aaatccgcaggaaaagcgagaggttctaataatggctggatttgctacaaagaaagtagaagctgaacctggactagtgcccagactagctgggg 42152696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 486 - 567
Target Start/End: Complemental strand, 27702079 - 27701998
Alignment:
Q  486 aaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgg 567  Q
    ||||| ||||| || |||||||||||||  ||| |||| ||||| |||||||||||||| | ||||||||||||||| ||||    
T  27702079 aaaagctaaaacttttagtaatggctggatttgttacagagaaagttggagctgagcctaggctagtgcccaggctaactgg 27701998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 536
Target Start/End: Complemental strand, 12000613 - 12000502
Alignment:
Q  414 atcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcaggtaaattcgcaggaaaagttaaaagttctagtaatggctgg 513  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||| |||           | || ||||||||||| ||||| ||||| ||||||||||    
T  12000613 atccttggcaaaatctgcaggaaatgtgtttcctgcggaatttacacaaa-----------acatccgcaggaaaagctaaaacttctactaatggctgg 12000525  T
Q  514 gcttgctacaaagaaaattggag 536  Q
     |||| |||||||||| ||||||    
T  12000524 acttgttacaaagaaagttggag 12000502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 29257594 - 29257504
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||| |||||||||||||||||||       |||||  ||||    ||||||||||| |||||||||||||||||||| ||||    
T  29257594 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaa---cgttacttcctttctgcgaataatttcacatttcctgc 29257504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 2475980 - 2475943
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcg 400  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2475980 gttacttccttcctgcgaataatttcacatttcctgcg 2475943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 15651218 - 15651169
Alignment:
Q  535 agctgagcctggactagtgcccaggctagctgggggtggctccgcccctg 584  Q
    |||||||| ||| |||||| | ||||||||||||||||||||||||||||    
T  15651218 agctgagcatgggctagtgtcgaggctagctgggggtggctccgcccctg 15651169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 15651299 - 15651238
Alignment:
Q  412 aaatcctaggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatctgcagg 473  Q
    ||||||| ||||| ||  ||||||||||||||| |||||||||||||| |||| ||||||||    
T  15651299 aaatccttggcaaaatacgcaggaaatgtgtttcctgcggaatttacacaaaactctgcagg 15651238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 17148970 - 17148934
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||| ||||    
T  17148970 gttacttccttcctgcgaataatttcacatttcctgc 17148934  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 18299084 - 18299120
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||| ||||    
T  18299084 gttacttccttcctgcgaataatttcacatttcctgc 18299120  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 41010686 - 41010650
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgc 399  Q
    |||||||||||||||||||||||||||||||| ||||    
T  41010686 gttacttccttcctgcgaataatttcacatttcctgc 41010650  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 17249504 - 17249465
Alignment:
Q  363 gttacttccttcctgcgaataatttcacattttctgcgga 402  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  17249504 gttactttcttcctgcgaataatttcacatttcctgcgga 17249465  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 467
Target Start/End: Complemental strand, 29257450 - 29257403
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatc 467  Q
    ||||| ||||||||||||||||||| ||||| |||||||| |||||||    
T  29257450 ggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatc 29257403  T

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Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 303979 - 304013
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggc 340  Q
    ||||||||||||||||||||||||||||| |||||    
T  303979 cagtggcggagccagaaattttatagagtttgggc 304013  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 13203942 - 13203908
Alignment:
Q  362 tgttacttccttcctgcgaataatttcacattttc 396  Q
    |||||||||||||| ||||||||||||||||||||    
T  13203942 tgttacttccttccagcgaataatttcacattttc 13203908  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 364 - 394
Target Start/End: Original strand, 45444396 - 45444426
Alignment:
Q  364 ttacttccttcctgcgaataatttcacattt 394  Q
    |||||||||||||||||||||||||||||||    
T  45444396 ttacttccttcctgcgaataatttcacattt 45444426  T

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Target: scaffold0108 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 475 - 584
Target Start/End: Original strand, 21075 - 21183
Alignment:
Q  475 aaattcgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagctgggg-gtgg 573  Q
    |||| |||||||||||| |||||||  |||||||||||||||||  ||||||||| ||| |||||||||||| ||||||||||||||||||||||  |||    
T  21075 aaatccgcaggaaaagtgaaaagtt--agtaatggctgggcttgtaacaaagaaagttgaagctgagcctgggctagtgcccaggctagctggggattgg 21172  T
Q  574 ctccgcccctg 584  Q
    |||||||||||    
T  21173 ctccgcccctg 21183  T

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Target: scaffold0075 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 480 - 582
Target Start/End: Complemental strand, 6946 - 6843
Alignment:
Q  480 cgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctggactagtgcccaggctagc-tgggggtggctccg 578  Q
    ||||||||||| ||||| ||||||||||||  |||||||||||||||||| |||||||| || |||| ||||||||||||||||| |||||| |||||||    
T  6946 cgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctaagtctgggctagtgcccaggctagcttgggggaggctccg 6847  T
Q  579 cccc 582  Q
    ||||    
T  6846 cccc 6843  T

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Target: scaffold0075; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 480 - 585
Target Start/End: Complemental strand, 11559 - 11455
Alignment:
Q  480 cgcaggaaaagttaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgg--actagtgcccaggctagctgggggtggctcc 577  Q
    |||||||||||  |||| ||||||||||||  |||||||||||||||||| ||||||||||||||||  ||||||  |||||||||||||||||||||||    
T  11559 cgcaggaaaagaaaaaa-ttctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagt--ccaggctagctgggggtggctcc 11463  T
Q  578 gcccctga 585  Q
    ||||||||    
T  11462 gcccctga 11455  T

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Target: scaffold0618 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 1923 - 1833
Alignment:
Q  306 cagtggcggagccagaaattttatagagtctgggcnnnnnnnttatcataaaatattgttacttccttcctgcgaataatttcacattttctgc 399  Q
    ||||||||||||||| |||||||||||||||||||       |||||  ||||    ||||||||||| |||||||||||||||||||| ||||    
T  1923 cagtggcggagccaggaattttatagagtctgggcaaaaaatttatcgcaaaa---cgttacttcctttctgcgaataatttcacatttcctgc 1833  T

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Target: scaffold0618; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 467
Target Start/End: Complemental strand, 1779 - 1732
Alignment:
Q  420 ggcaatatctgcaggaaatgtgtttactgcggaatttacataaaaatc 467  Q
    ||||| ||||||||||||||||||| ||||| |||||||| |||||||    
T  1779 ggcaaaatctgcaggaaatgtgtttcctgcgaaatttacacaaaaatc 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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