View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4857-Insertion-4 (Length: 775)
Name: NF4857-Insertion-4
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 20 - 618
Target Start/End: Complemental strand, 2697543 - 2696963
Alignment:
| Q |
20 |
aaatatttataactaatctatgatttttgtgtgagatgggattatgtggctaagcatatgtttcaggatctttattggcacttggaatgttgctggaaga |
119 |
Q |
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| T |
2697543 |
aaatgtttataattagtctatgatttttgtgtgatatgtgatta--------aacatatttttcaggatctttattggtactcgaaatgttgctggaaga |
2697452 |
T |
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| Q |
120 |
tctcttgtgggaagcttagctgttgatttggatgagtggttaaatctcaagaattctgcagatatatatgtacttgggtatgtatgtatgcatgacttag |
219 |
Q |
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| T |
2697451 |
tctcctgtaggaagcgtagctgttgatttggatgagtggttaaatataaagaattttgcagatatatattttcttgggta------tatgtatgacttag |
2697358 |
T |
|
| Q |
220 |
attctctatagttggttttatgaagcaacctactgcgaccggttgtagacagttagattaagaaataaatctattatgatttatgcttgtattcgtgatt |
319 |
Q |
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| T |
2697357 |
attctctgtagttggttttatgaagcaaccaactgcgatcggttgtagaccgttagattaagaaataaatctattatga-ttatgcatgtattcatgatt |
2697259 |
T |
|
| Q |
320 |
aatatcgaagtaagttttattggctagaaattttataaaatacaagttaatagact-ctagttctaaattgtggtttcgacttcatattatgaaaatgtg |
418 |
Q |
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| T |
2697258 |
aatgtcgaagtaagtttaatttgttagaaattttataaaataaaggttaatagactgatagttctaaattgtggtttcgacttcatattgtgaaaacgtg |
2697159 |
T |
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| Q |
419 |
aacaaatgctactgatgcagcgtcaattgcaattgcgatcaagttgt-aagggttcaaagtttttatgttacgacttacgaccacaatagtggttgttga |
517 |
Q |
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| T |
2697158 |
aacaaatgctactgatgtagcctcaattgctgtagcgatcaatttttaaaggtttcaaagtatttatg-------ttgcaaccataatcgtggttgtaaa |
2697066 |
T |
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| Q |
518 |
cctaatataaaaccgtaaaaagacaa--atgcaaccacggatgcaatccggtcacaaatacttcaaaattctttatgttgcgatcataattggggttgca |
615 |
Q |
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| T |
2697065 |
cctgatataaaaccataaatagacaaatatataaccacatttgcaatctcgtcgcaaagacttcaaaattctttatgttgcgaccacaattgtggttgga |
2696966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 338 - 711
Target Start/End: Complemental strand, 2706165 - 2705800
Alignment:
| Q |
338 |
attggctagaaattttataaaatacaagttaatagactc-tagttctaaattgtggtttcgacttcatattatgaaaatgtgaacaaatgctactgatgc |
436 |
Q |
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| T |
2706165 |
attggttagaaattttataaattacaggttaa---actcctagttctatattgtggtttcgtcttcatattgtgaaaacgtgaacaaatactgctgatgc |
2706069 |
T |
|
| Q |
437 |
agcgtcaattgcaattgcgatcaagttgtaaggg-ttcaaagtttttatgttacgacttacgaccacaatagtggttgttgacctaatataaaaccgtaa |
535 |
Q |
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| T |
2706068 |
ggcctccattgcagttgcaatcgagttgtaaagacttgaaagtttttatgttgcgac-------cacaattgtggttgcagacccaatataaaaccatag |
2705976 |
T |
|
| Q |
536 |
aaagacaaatgcaaccacggatgcaatccggtcacaaatacttcaaaattctttatgttgcgatcataattggggttgcagactgcaatttaaaattatt |
635 |
Q |
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| T |
2705975 |
atagacaaatgtaaccccacttgcaatccggtcgtaaagacttcaaaattctttatgttgcgaccatagttagggttgcagactgcactttaaaatcatt |
2705876 |
T |
|
| Q |
636 |
gcattaaggtttggccttactttgacgccaataaaatcctctacttttttgtttcaaaggaaaatgattattcttt |
711 |
Q |
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| T |
2705875 |
gcattaaggtttgaccctactcggagcccaataaaatcctctacttttttatttcataagaaagtgcttattcttt |
2705800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 2706442 - 2706257
Alignment:
| Q |
20 |
aaatatttataactaatctatgatttttgtgtgagatgggattatgt--ggctaagcatatgtttcaggatctttattggcacttggaatgttgctggaa |
117 |
Q |
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|||| ||||||| || |||||||||||| ||||| ||| |||||| | || |||||| || ||||||||| ||| |||| ||||||||||||||||||| |
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| T |
2706442 |
aaatgtttataattactctatgatttttatgtgatatgtgattatatatggataagcaaatttttcaggatatttgttggtacttggaatgttgctggaa |
2706343 |
T |
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| Q |
118 |
gatctcttgtgggaagcttagctgttgatttggatgagtggttaaatctcaagaattctgcagatatatatgtacttgggtatgta |
203 |
Q |
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| T |
2706342 |
gatctcctgtgggaagcttagctgttgatttggatgagtggttaaatctcaagaattctgcagatatatatgttctcgggtgtgta |
2706257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 707 - 775
Target Start/End: Complemental strand, 2705765 - 2705697
Alignment:
| Q |
707 |
tctttcaggtttcaagagatagtacctttaaagacctcaacagtaataggggcataagatccatcagtg |
775 |
Q |
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| T |
2705765 |
tctttcaggtttcaagagatagtacctttgaagacctcaacagtaataggggcagaagatccatcagtg |
2705697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 630
Target Start/End: Complemental strand, 37281095 - 37281040
Alignment:
| Q |
575 |
acttcaaaattctttatgttgcgatcataattggggttgcagactgcaatttaaaa |
630 |
Q |
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| T |
37281095 |
acttcaaaatattttatattgcggccacaattggggttgcagactgcaatttaaaa |
37281040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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