View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4857-Insertion-5 (Length: 772)
Name: NF4857-Insertion-5
Description: NF4857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4857-Insertion-5 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 703; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 8 - 772
Target Start/End: Original strand, 29819597 - 29820361
Alignment:
| Q |
8 |
cattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtaga |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819597 |
cattcccttgaagaaacacgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtaga |
29819696 |
T |
|
| Q |
108 |
ggcacacttcttannnnnnnaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccag |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819697 |
ggcacacttcttatttttttaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccag |
29819796 |
T |
|
| Q |
208 |
tatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819797 |
tatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaa |
29819896 |
T |
|
| Q |
308 |
taacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29819897 |
taacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtct |
29819996 |
T |
|
| Q |
408 |
tgcttcccagccatattctccaactggtttaattcattcacgtcatcaagaacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnngc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
29819997 |
tgcttcccagccatattctccaactggtttaattcattcacatcatcaagaacaagtagaacctttttcctacggaaagagttttgtattgtttttttgc |
29820096 |
T |
|
| Q |
508 |
catcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29820097 |
catcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaac |
29820196 |
T |
|
| Q |
608 |
attttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgccaatgccacccataccccatatgcct |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29820197 |
attttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgcctatgccacccataccccatatgccg |
29820296 |
T |
|
| Q |
708 |
ataaagcgaacgtcattcaaccccatacctatgagcttgttcacttcctccacctttgactcaat |
772 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29820297 |
ataaagcgaacgtcattcaaccccatacctatgagcttgttcacttcctccacctttgactcaat |
29820361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 766
Target Start/End: Original strand, 29827840 - 29828598
Alignment:
| Q |
8 |
cattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtaga |
107 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||| || ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
29827840 |
cattcccttgaagaaacaggaaatatctagaaatatattcttctccatggcatctaagctctcataacttattttcagtttatcttggatttcacgtaga |
29827939 |
T |
|
| Q |
108 |
ggcacacttcttannnnnnnaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccag |
207 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29827940 |
ggagcacttcttatatttttaatagcactatgccaaagatcaacacttcttccataaagataggaacctaacacctcaagtgccaatggaagaccaccag |
29828039 |
T |
|
| Q |
208 |
tatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaa |
307 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
29828040 |
catattccaccacttctttagacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagacattaagggcttcgttttggaa |
29828139 |
T |
|
| Q |
308 |
taacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtct |
407 |
Q |
| |
|
|| ||||| ||||||||||| || ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
29828140 |
tagcatcccaacctcataaggttgatgtactccatgtgttatcaaccagtgtttatctcttgttgtgattattactctacttcctggaccaaaccaatct |
29828239 |
T |
|
| Q |
408 |
tgcttcccagccatattctccaactggtttaattcattcacgtcatcaagaacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnngc |
507 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||| || |
|
|
| T |
29828240 |
tgcttcccagccaaattctccaactgatttatttcattcacatcatcaagaacaagtagaaccttttttctgcataaagaattttgtattgtttttttgc |
29828339 |
T |
|
| Q |
508 |
catcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaac |
607 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29828340 |
catcatacaaattatgaaaatcatttctacttatacttagatgagaaagaagttgcctttgtatgtgaactaaaccatttgcctcagatatctctctaac |
29828439 |
T |
|
| Q |
608 |
attttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgccaatgccacccataccccatatgcct |
707 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||||||||| || || |||||||||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
29828440 |
attttcaagaaagcaagtagtttgaaattcacattggattgcttcgtaaacagctctagcaatagttgtcttacctatgccacccataccccatatgcct |
29828539 |
T |
|
| Q |
708 |
ataaagcgaacgtcattcaaccccatacctatgagcttgttcacttcctccacctttga |
766 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
29828540 |
ataaagcgaacatcattcaaccccatacctaagagcttgttcacttcctccacttttga |
29828598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 766
Target Start/End: Complemental strand, 29572435 - 29571677
Alignment:
| Q |
8 |
cattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtaga |
107 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| | |||||||||||| | |||||| || ||||||||||||| ||| |||||||||| | || | | |
|
|
| T |
29572435 |
cattcccttaaagaaacaagcaatatctagaaaaatatccttctccatggtatctaaactatcataacttattttcaggttatcttggactctagggtgg |
29572336 |
T |
|
| Q |
108 |
ggcacacttcttannnnnnnaatggcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccag |
207 |
Q |
| |
|
|| | |||||||| || ||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29572335 |
ggaaaacttcttaattttttaacagcactatgccaaacatcaatatttcttccatacagataggaacctaacacctcaagtgccaatggaagaccaccac |
29572236 |
T |
|
| Q |
208 |
tatagtccaccacttctttggacaaatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaa |
307 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || | | |
|
|
| T |
29572235 |
aatagtccaccacttctttggataagtccaaatacccttcttgtggtttatctcctttaaaggctttcaaacaaaagagaacaagggcatcatgtttgca |
29572136 |
T |
|
| Q |
308 |
taacatccaaacctcataagttttatgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtct |
407 |
Q |
| |
|
|||||| | | | ||| ||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29572135 |
taacattccagttttataggttttatgtactccatgtgtcattagcaagtgcttgtctcttgttgtgattattactctacttcccggaccaaaccaatct |
29572036 |
T |
|
| Q |
408 |
tgcttcccagccatattctccaactggtttaattcattcacgtcatcaagaacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnngc |
507 |
Q |
| |
|
|| |||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| | |
|
|
| T |
29572035 |
tgtttcccaaccaaattctccaactggtttagttcattcacatcatcaagaacaagtagaaccttttttctgcataaagagttttgtattgtttttttcc |
29571936 |
T |
|
| Q |
508 |
catcatacaaattatgaaaatcattcctacttatactcatatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaac |
607 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29571935 |
catcatacaaatcatgaaaatcattcctacttatactcagatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaac |
29571836 |
T |
|
| Q |
608 |
attttctagaaagcaagtaagttgaaattcacatcggattgcttcatagaccgctctagcaatagttgacttgccaatgccacccataccccatatgcct |
707 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29571835 |
attttctagaaagcaagtaagttcaaattcacatcggattgtttcatagaccgctctagcaatagttgacttgcctatgccacccataccccatatgcct |
29571736 |
T |
|
| Q |
708 |
ataaagcgaacgtcattcaaccccatacctatgagcttgttcacttcctccacctttga |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
29571735 |
ataaagcgaacgtcattcaaccccatacctaagaacttgtttacttcctccacctttga |
29571677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 132 - 475
Target Start/End: Original strand, 11123939 - 11124282
Alignment:
| Q |
132 |
gcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccagtatagtccaccacttctttggaca |
231 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||| ||||| || ||||||||||| ||||||||||| | ||||| || |||||||||||| ||| |
|
|
| T |
11123939 |
gcactatgccaaacctcaacagttcttccatgaagatgtgaacctaatacctcaagtgctaatggaagacctcttgtatattcaaccacttctttgcaca |
11124038 |
T |
|
| Q |
232 |
aatccaaatagccttcttgtggtttatctcctttaaaggctttcaaacaaaagagattaagagcttcattttggaataacatccaaacctcataagtttt |
331 |
Q |
| |
|
| |||||| |||||| |||| | | ||||||||||||||||||| ||||| ||||| |||||||||| | ||| | ||| |||||||| |
|
|
| T |
11124039 |
agctcaaatactcttctttaggttgaatttctttaaaggctttcaaacagaagagcttaagtgcttcattttttactaagcctttagccttataagtttc |
11124138 |
T |
|
| Q |
332 |
atgtactccatgtgtcattaacaagtgtttatctctcgttgtgattattactctacttcccggaccaaaccagtcttgcttcccagccatattctccaac |
431 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
11124139 |
atgcactccatgtgtcattaacaagtgcttatctctacttgtgattataactctacttcctggaccaaaccattcttgcttcccagctaaattctccaat |
11124238 |
T |
|
| Q |
432 |
tggtttaattcattcacgtcatcaagaacaagtagaaccttttt |
475 |
Q |
| |
|
||| ||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
11124239 |
tggcttaattcgctcacatcatcaagaacaagaagaaccttttt |
11124282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 648 - 720
Target Start/End: Original strand, 11124458 - 11124530
Alignment:
| Q |
648 |
gcttcatagaccgctctagcaatagttgacttgccaatgccacccataccccatatgcctataaagcgaacgt |
720 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
11124458 |
gcttcatagactaatctagcaatagttgtctttccaatgccacccatgccccatatgcctatgaagcgaacgt |
11124530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 20990 - 20885
Alignment:
| Q |
458 |
aacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnn-gccatcatacaaattatgaaaatcattcctacttatactcatatgagaaag |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20990 |
aacaagtagaaccttttttctacggaaagagttttgtattgttttttttgccatcatacaaattatgaaaatcattcctacttatactcatatgagaaag |
20891 |
T |
|
| Q |
557 |
aagttg |
562 |
Q |
| |
|
|||||| |
|
|
| T |
20890 |
aagttg |
20885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 6589823 - 6589865
Alignment:
| Q |
361 |
tatctctcgttgtgattattactctacttcccggaccaaacca |
403 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
6589823 |
tatctcttgttgtgattattattctactccccggaccaaacca |
6589865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 6713992 - 6713950
Alignment:
| Q |
361 |
tatctctcgttgtgattattactctacttcccggaccaaacca |
403 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
6713992 |
tatctcttgttgtgatgattactctactccccggaccaaacca |
6713950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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